Result of FASTA (omim) for
pFN21AB9769
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9769, 1047 aa
1>>>pF1KB9769 1047 - 1047 aa - 1047 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4370+/-0.00052; mu= 9.0235+/- 0.033
mean_var=251.3526+/-51.990, 0's: 0 Z-trim(114.7): 25 B-trim: 243 in 1/54
Lambda= 0.080897
statistics sampled from 24733 (24747) to 24733 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.601), E-opt: 0.2 (0.29), width: 16
Scan time: 14.330
The best scores are: opt bits E(85289)
NP_009123 (OMIM: 605012) FACT complex subunit SPT1 (1047) 6822 811.0 0
XP_011534683 (OMIM: 605012) PREDICTED: FACT comple ( 982) 6404 762.2 0
>>NP_009123 (OMIM: 605012) FACT complex subunit SPT16 [H (1047 aa)
initn: 6822 init1: 6822 opt: 6822 Z-score: 4319.9 bits: 811.0 E(85289): 0
Smith-Waterman score: 6822; 100.0% identity (100.0% similar) in 1047 aa overlap (1-1047:1-1047)
10 20 30 40 50 60
pF1KB9 MAVTLDKDAYYRRVKRLYSNWRKGEDEYANVDAIVVSVGVDEEIVYAKSTALQTWLFGYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MAVTLDKDAYYRRVKRLYSNWRKGEDEYANVDAIVVSVGVDEEIVYAKSTALQTWLFGYE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLIREKNESNKSSFDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLIREKNESNKSSFDK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 MIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLNKEGFDKIDISAVVAYTIAVKEDGEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLNKEGFDKIDISAVVAYTIAVKEDGEL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 NLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLAESVEKAIEEKKYLAGADPSTVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NLMKKAASITSEVFNKFFKERVMEIVDADEKVRHSKLAESVEKAIEEKKYLAGADPSTVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 MCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPSQEVQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFKSYCSNLVRTLMVDPSQEVQE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 NYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKITKNLGFGMGIEFREGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKKQKPELLNKITKNLGFGMGIEFREGS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATVLTS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB9 VKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB9 LAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB9 PVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 PVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITY
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB9 RASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 RASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB9 KLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB9 HFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 HFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAF
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB9 KNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB9 ELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 ELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB9 NWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEEGDSESEIEDETFNPSEDDYEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAEEGDSESEIEDETFNPSEDDYEEEEE
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB9 DSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 DSDEDYSSEAEESDYSKESLGSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKR
970 980 990 1000 1010 1020
1030 1040
pF1KB9 KASVHSSGRGSNRGSRHSSAPPKKKRK
:::::::::::::::::::::::::::
NP_009 KASVHSSGRGSNRGSRHSSAPPKKKRK
1030 1040
>>XP_011534683 (OMIM: 605012) PREDICTED: FACT complex su (982 aa)
initn: 6404 init1: 6404 opt: 6404 Z-score: 4056.6 bits: 762.2 E(85289): 0
Smith-Waterman score: 6404; 100.0% identity (100.0% similar) in 982 aa overlap (66-1047:1-982)
40 50 60 70 80 90
pF1KB9 VSVGVDEEIVYAKSTALQTWLFGYELTDTIMVFCDDKIIFMASKKKVEFLKQIANTKGNE
::::::::::::::::::::::::::::::
XP_011 MVFCDDKIIFMASKKKVEFLKQIANTKGNE
10 20 30
100 110 120 130 140 150
pF1KB9 NANGAPAITLLIREKNESNKSSFDKMIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NANGAPAITLLIREKNESNKSSFDKMIEAIKESKNGKKIGVFSKDKFPGEFMKSWNDCLN
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB9 KEGFDKIDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVDADEKVRHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEGFDKIDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVDADEKVRHS
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB9 KLAESVEKAIEEKKYLAGADPSTVEMCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLAESVEKAIEEKKYLAGADPSTVEMCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAM
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB9 GIRFKSYCSNLVRTLMVDPSQEVQENYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GIRFKSYCSNLVRTLMVDPSQEVQENYNFLLQLQEELLKELRHGVKICDVYNAVMDVVKK
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB9 QKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKPELLNKITKNLGFGMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPE
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB9 EKTYALFIGDTVLVDEDGPATVLTSVKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKTYALFIGDTVLVDEDGPATVLTSVKKKVKNVGIFLKNEDEEEEEEEKDEAEDLLGRGS
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB9 RAALLTERTRNEMTAEEKRRAHQKELAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RAALLTERTRNEMTAEEKRRAHQKELAAQLNEEAKRRLTEQKGEQQIQKARKSNVSYKNP
400 410 420 430 440 450
520 530 540 550 560 570
pF1KB9 SLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFYCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFYCP
460 470 480 490 500 510
580 590 600 610 620 630
pF1KB9 GSALGRNEGNIFPNPEATFVKEITYRASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSALGRNEGNIFPNPEATFVKEITYRASNIKAPGEQTVPALNLQNAFRIIKEVQKRYKTR
520 530 540 550 560 570
640 650 660 670 680 690
pF1KB9 EAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGD
580 590 600 610 620 630
700 710 720 730 740 750
pF1KB9 KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQ
640 650 660 670 680 690
760 770 780 790 800 810
pF1KB9 HMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTC
700 710 720 730 740 750
820 830 840 850 860 870
pF1KB9 LLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIP
760 770 780 790 800 810
880 890 900 910 920 930
pF1KB9 VASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSDAE
820 830 840 850 860 870
940 950 960 970 980 990
pF1KB9 EGDSESEIEDETFNPSEDDYEEEEEDSDEDYSSEAEESDYSKESLGSEEESGKDWDELEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGDSESEIEDETFNPSEDDYEEEEEDSDEDYSSEAEESDYSKESLGSEEESGKDWDELEE
880 890 900 910 920 930
1000 1010 1020 1030 1040
pF1KB9 EARKADRESRYEEEEEQSRSMSRKRKASVHSSGRGSNRGSRHSSAPPKKKRK
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EARKADRESRYEEEEEQSRSMSRKRKASVHSSGRGSNRGSRHSSAPPKKKRK
940 950 960 970 980
1047 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:46:42 2016 done: Fri Nov 4 18:46:44 2016
Total Scan time: 14.330 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]