Result of FASTA (omim) for pFN21AB9762
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9762, 800 aa
  1>>>pF1KB9762 800 - 800 aa - 800 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7500+/-0.000449; mu= 7.9301+/- 0.028
 mean_var=315.4582+/-65.844, 0's: 0 Z-trim(120.9): 384  B-trim: 1363 in 1/52
 Lambda= 0.072211
 statistics sampled from 36414 (36864) to 36414 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.432), width:  16
 Scan time: 15.210

The best scores are:                                      opt bits E(85289)
NP_008882 (OMIM: 601787) transcription initiation  ( 800) 5344 571.1 6.4e-162
NP_620640 (OMIM: 601787) transcription initiation  ( 745) 3663 396.0 3.2e-109
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655)  480 64.3   2e-09
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655)  480 64.3   2e-09
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655)  480 64.3   2e-09
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658)  480 64.3   2e-09
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672)  480 64.3   2e-09
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672)  480 64.3   2e-09
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672)  480 64.3   2e-09
XP_016878349 (OMIM: 602703,616212) PREDICTED: kata ( 675)  480 64.3   2e-09
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675)  480 64.3   2e-09
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675)  480 64.3   2e-09
XP_011521112 (OMIM: 602703,616212) PREDICTED: kata ( 675)  480 64.3   2e-09
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436)  453 61.3 1.1e-08
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478)  453 61.3 1.1e-08
XP_011530390 (OMIM: 606278) PREDICTED: F-box/WD re ( 540)  432 59.2 5.5e-08
NP_001013433 (OMIM: 606278) F-box/WD repeat-contai ( 589)  432 59.3 5.8e-08
NP_060785 (OMIM: 606278) F-box/WD repeat-containin ( 627)  432 59.3 6.1e-08
XP_011530389 (OMIM: 606278) PREDICTED: F-box/WD re ( 679)  432 59.3 6.4e-08
XP_011530388 (OMIM: 606278) PREDICTED: F-box/WD re ( 679)  432 59.3 6.4e-08
NP_361014 (OMIM: 606278) F-box/WD repeat-containin ( 707)  432 59.4 6.6e-08
XP_011530386 (OMIM: 606278) PREDICTED: F-box/WD re ( 707)  432 59.4 6.6e-08
XP_011530387 (OMIM: 606278) PREDICTED: F-box/WD re ( 707)  432 59.4 6.6e-08
XP_016863851 (OMIM: 606278) PREDICTED: F-box/WD re ( 707)  432 59.4 6.6e-08
XP_011530385 (OMIM: 606278) PREDICTED: F-box/WD re ( 707)  432 59.4 6.6e-08
XP_011519465 (OMIM: 604447) PREDICTED: guanine nuc ( 301)  409 56.5   2e-07
NP_006569 (OMIM: 604447) guanine nucleotide-bindin ( 353)  409 56.6 2.2e-07
XP_011519464 (OMIM: 604447) PREDICTED: guanine nuc ( 353)  409 56.6 2.2e-07
XP_016856550 (OMIM: 139380,613065,616973) PREDICTE ( 340)  408 56.5 2.3e-07
XP_016856549 (OMIM: 139380,613065,616973) PREDICTE ( 340)  408 56.5 2.3e-07
NP_001269468 (OMIM: 139380,613065,616973) guanine  ( 340)  408 56.5 2.3e-07
XP_016856548 (OMIM: 139380,613065,616973) PREDICTE ( 340)  408 56.5 2.3e-07
NP_002065 (OMIM: 139380,613065,616973) guanine nuc ( 340)  408 56.5 2.3e-07
NP_057278 (OMIM: 604447) guanine nucleotide-bindin ( 395)  409 56.6 2.4e-07
XP_016877356 (OMIM: 604447) PREDICTED: guanine nuc ( 212)  402 55.6 2.7e-07
NP_055317 (OMIM: 608330) pre-mRNA-processing facto ( 504)  397 55.5 6.6e-07
NP_067642 (OMIM: 610863,615185) guanine nucleotide ( 340)  387 54.3 1.1e-06
XP_006713784 (OMIM: 610863,615185) PREDICTED: guan ( 340)  387 54.3 1.1e-06
XP_005247749 (OMIM: 610863,615185) PREDICTED: guan ( 340)  387 54.3 1.1e-06
XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 ( 321)  380 53.5 1.7e-06
NP_001155052 (OMIM: 614783,614813) POC1 centriolar ( 359)  380 53.6 1.8e-06
NP_001155053 (OMIM: 614783,614813) POC1 centriolar ( 369)  380 53.6 1.9e-06
NP_001309196 (OMIM: 607795,615922) U4/U6 small nuc ( 279)  377 53.1 1.9e-06
NP_001309195 (OMIM: 607795,615922) U4/U6 small nuc ( 279)  377 53.1 1.9e-06
NP_056241 (OMIM: 614783,614813) POC1 centriolar pr ( 407)  380 53.6   2e-06
XP_011538622 (OMIM: 603482) PREDICTED: F-box/WD re ( 537)  378 53.6 2.7e-06
XP_016872363 (OMIM: 603482) PREDICTED: F-box/WD re ( 543)  378 53.6 2.7e-06
NP_003930 (OMIM: 603482) F-box/WD repeat-containin ( 569)  378 53.6 2.8e-06
NP_001243785 (OMIM: 603482) F-box/WD repeat-contai ( 579)  378 53.6 2.9e-06
NP_001231855 (OMIM: 607795,615922) U4/U6 small nuc ( 521)  377 53.5 2.9e-06


>>NP_008882 (OMIM: 601787) transcription initiation fact  (800 aa)
 initn: 5344 init1: 5344 opt: 5344  Z-score: 3028.0  bits: 571.1 E(85289): 6.4e-162
Smith-Waterman score: 5344; 100.0% identity (100.0% similar) in 800 aa overlap (1-800:1-800)

               10        20        30        40        50        60
pF1KB9 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GGTPKPTVAVSAAAPAGAAPVPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GGTPKPTVAVSAAAPAGAAPVPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 GLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAAPDPPGTGASGATVVSGSASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAAPDPPGTGASGATVVSGSASG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 PAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 PAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB9 CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB9 RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_008 RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
              730       740       750       760       770       780

              790       800
pF1KB9 VHLHFTRRNLVLAAGAYSPQ
       ::::::::::::::::::::
NP_008 VHLHFTRRNLVLAAGAYSPQ
              790       800

>>NP_620640 (OMIM: 601787) transcription initiation fact  (745 aa)
 initn: 3923 init1: 3662 opt: 3663  Z-score: 2081.9  bits: 396.0 E(85289): 3.2e-109
Smith-Waterman score: 4831; 93.1% identity (93.1% similar) in 800 aa overlap (1-800:1-745)

               10        20        30        40        50        60
pF1KB9 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GGTPKPTVAVSAAAPAGAAPVPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 GGTPKPTVAVSAAAPAGAAPVPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 GLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAAPDPPGTGASGATVVSGSASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 GLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAAPDPPGTGASGATVVSGSASG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 PAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 PAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF
       :::::::::::::::                                             
NP_620 GHSGPVYGASFSPDR---------------------------------------------
              550                                                  

              610       620       630       640       650       660
pF1KB9 VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 ----------LWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
                   560       570       580       590       600     

              670       680       690       700       710       720
pF1KB9 CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS
         610       620       630       640       650       660     

              730       740       750       760       770       780
pF1KB9 RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
         670       680       690       700       710       720     

              790       800
pF1KB9 VHLHFTRRNLVLAAGAYSPQ
       ::::::::::::::::::::
NP_620 VHLHFTRRNLVLAAGAYSPQ
         730       740     

>>XP_016878353 (OMIM: 602703,616212) PREDICTED: katanin   (655 aa)
 initn: 463 init1: 463 opt: 480  Z-score: 290.4  bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)

              510       520       530       540       550       560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
                                     ::: .:. . .:.. : .  ..   . ::.
XP_016                        MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
                                      10        20        30       

               570       580       590       600       610         
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
       .. .:  : :::..  .:...  ::. :: .....     .:.:...   :.:  .  . 
XP_016 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
        40        50        60        70        80        90       

     620       630       640       650       660       670         
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
       :: . :: :..    ::: ...::.:: : ...:::.   .::  . ::.  .. : :::
XP_016 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
       100       110       120       130       140       150       

     680       690       700       710       720       730         
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
       .:..::..: :  : :::.  : :..:. :::  :  ..:  .  .::::: : :.:.::
XP_016 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
       160       170       180       190       200       210       

     740       750       760       770       780       790         
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
                                                                   
XP_016 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
       220       230       240       250       260       270       

>>NP_005877 (OMIM: 602703,616212) katanin p80 WD40 repea  (655 aa)
 initn: 463 init1: 463 opt: 480  Z-score: 290.4  bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)

              510       520       530       540       550       560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
                                     ::: .:. . .:.. : .  ..   . ::.
NP_005                        MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
                                      10        20        30       

               570       580       590       600       610         
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
       .. .:  : :::..  .:...  ::. :: .....     .:.:...   :.:  .  . 
NP_005 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
        40        50        60        70        80        90       

     620       630       640       650       660       670         
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
       :: . :: :..    ::: ...::.:: : ...:::.   .::  . ::.  .. : :::
NP_005 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
       100       110       120       130       140       150       

     680       690       700       710       720       730         
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
       .:..::..: :  : :::.  : :..:. :::  :  ..:  .  .::::: : :.:.::
NP_005 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
       160       170       180       190       200       210       

     740       750       760       770       780       790         
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
                                                                   
NP_005 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
       220       230       240       250       260       270       

>>XP_016878352 (OMIM: 602703,616212) PREDICTED: katanin   (655 aa)
 initn: 463 init1: 463 opt: 480  Z-score: 290.4  bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)

              510       520       530       540       550       560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
                                     ::: .:. . .:.. : .  ..   . ::.
XP_016                        MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
                                      10        20        30       

               570       580       590       600       610         
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
       .. .:  : :::..  .:...  ::. :: .....     .:.:...   :.:  .  . 
XP_016 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
        40        50        60        70        80        90       

     620       630       640       650       660       670         
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
       :: . :: :..    ::: ...::.:: : ...:::.   .::  . ::.  .. : :::
XP_016 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
       100       110       120       130       140       150       

     680       690       700       710       720       730         
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
       .:..::..: :  : :::.  : :..:. :::  :  ..:  .  .::::: : :.:.::
XP_016 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
       160       170       180       190       200       210       

     740       750       760       770       780       790         
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
                                                                   
XP_016 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
       220       230       240       250       260       270       

>>XP_006721186 (OMIM: 602703,616212) PREDICTED: katanin   (658 aa)
 initn: 463 init1: 463 opt: 480  Z-score: 290.4  bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)

              510       520       530       540       550       560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
                                     ::: .:. . .:.. : .  ..   . ::.
XP_006                        MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
                                      10        20        30       

               570       580       590       600       610         
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
       .. .:  : :::..  .:...  ::. :: .....     .:.:...   :.:  .  . 
XP_006 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
        40        50        60        70        80        90       

     620       630       640       650       660       670         
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
       :: . :: :..    ::: ...::.:: : ...:::.   .::  . ::.  .. : :::
XP_006 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
       100       110       120       130       140       150       

     680       690       700       710       720       730         
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
       .:..::..: :  : :::.  : :..:. :::  :  ..:  .  .::::: : :.:.::
XP_006 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
       160       170       180       190       200       210       

     740       750       760       770       780       790         
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
                                                                   
XP_006 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
       220       230       240       250       260       270       

>>XP_005255829 (OMIM: 602703,616212) PREDICTED: katanin   (672 aa)
 initn: 463 init1: 463 opt: 480  Z-score: 290.3  bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)

              510       520       530       540       550       560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
                                     ::: .:. . .:.. : .  ..   . ::.
XP_005                        MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
                                      10        20        30       

               570       580       590       600       610         
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
       .. .:  : :::..  .:...  ::. :: .....     .:.:...   :.:  .  . 
XP_005 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
        40        50        60        70        80        90       

     620       630       640       650       660       670         
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
       :: . :: :..    ::: ...::.:: : ...:::.   .::  . ::.  .. : :::
XP_005 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
       100       110       120       130       140       150       

     680       690       700       710       720       730         
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
       .:..::..: :  : :::.  : :..:. :::  :  ..:  .  .::::: : :.:.::
XP_005 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
       160       170       180       190       200       210       

     740       750       760       770       780       790         
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
                                                                   
XP_005 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
       220       230       240       250       260       270       

>>XP_016878350 (OMIM: 602703,616212) PREDICTED: katanin   (672 aa)
 initn: 463 init1: 463 opt: 480  Z-score: 290.3  bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)

              510       520       530       540       550       560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
                                     ::: .:. . .:.. : .  ..   . ::.
XP_016                        MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
                                      10        20        30       

               570       580       590       600       610         
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
       .. .:  : :::..  .:...  ::. :: .....     .:.:...   :.:  .  . 
XP_016 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
        40        50        60        70        80        90       

     620       630       640       650       660       670         
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
       :: . :: :..    ::: ...::.:: : ...:::.   .::  . ::.  .. : :::
XP_016 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
       100       110       120       130       140       150       

     680       690       700       710       720       730         
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
       .:..::..: :  : :::.  : :..:. :::  :  ..:  .  .::::: : :.:.::
XP_016 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
       160       170       180       190       200       210       

     740       750       760       770       780       790         
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
                                                                   
XP_016 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
       220       230       240       250       260       270       

>>XP_016878351 (OMIM: 602703,616212) PREDICTED: katanin   (672 aa)
 initn: 463 init1: 463 opt: 480  Z-score: 290.3  bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)

              510       520       530       540       550       560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
                                     ::: .:. . .:.. : .  ..   . ::.
XP_016                        MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
                                      10        20        30       

               570       580       590       600       610         
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
       .. .:  : :::..  .:...  ::. :: .....     .:.:...   :.:  .  . 
XP_016 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
        40        50        60        70        80        90       

     620       630       640       650       660       670         
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
       :: . :: :..    ::: ...::.:: : ...:::.   .::  . ::.  .. : :::
XP_016 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
       100       110       120       130       140       150       

     680       690       700       710       720       730         
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
       .:..::..: :  : :::.  : :..:. :::  :  ..:  .  .::::: : :.:.::
XP_016 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
       160       170       180       190       200       210       

     740       750       760       770       780       790         
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
                                                                   
XP_016 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
       220       230       240       250       260       270       

>>XP_016878349 (OMIM: 602703,616212) PREDICTED: katanin   (675 aa)
 initn: 463 init1: 463 opt: 480  Z-score: 290.2  bits: 64.3 E(85289): 2e-09
Smith-Waterman score: 480; 34.8% identity (65.7% similar) in 210 aa overlap (531-739:8-217)

              510       520       530       540       550       560
pF1KB9 PKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLS
                                     ::: .:. . .:.. : .  ..   . ::.
XP_016                        MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLA
                                      10        20        30       

               570       580       590       600       610         
pF1KB9 SS-EDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQP
       .. .:  : :::..  .:...  ::. :: .....     .:.:...   :.:  .  . 
XP_016 TGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKI
        40        50        60        70        80        90       

     620       630       640       650       660       670         
pF1KB9 LRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSP
       :: . :: :..    ::: ...::.:: : ...:::.   .::  . ::.  .. : :::
XP_016 LRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP
       100       110       120       130       140       150       

     680       690       700       710       720       730         
pF1KB9 NGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD
       .:..::..: :  : :::.  : :..:. :::  :  ..:  .  .::::: : :.:.::
XP_016 DGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWD
       160       170       180       190       200       210       

     740       750       760       770       780       790         
pF1KB9 AIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSP
                                                                   
XP_016 LEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVAD
       220       230       240       250       260       270       




800 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:44:14 2016 done: Fri Nov  4 18:44:17 2016
 Total Scan time: 15.210 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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