FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9762, 800 aa
  1>>>pF1KB9762 800 - 800 aa - 800 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.6460+/-0.00105; mu= 2.9613+/- 0.063
 mean_var=298.1437+/-61.933, 0's: 0 Z-trim(113.4): 176  B-trim: 0 in 0/52
 Lambda= 0.074278
 statistics sampled from 13865 (14044) to 13865 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.431), width:  16
 Scan time:  4.210

The best scores are:                                      opt bits E(32554)
CCDS7547.1 TAF5 gene_id:6877|Hs108|chr10           ( 800) 5344 586.8 4.8e-167
CCDS1581.1 TAF5L gene_id:27097|Hs108|chr1          ( 589) 1149 137.1 8.2e-32


>>CCDS7547.1 TAF5 gene_id:6877|Hs108|chr10                (800 aa)
 initn: 5344 init1: 5344 opt: 5344  Z-score: 3112.4  bits: 586.8 E(32554): 4.8e-167
Smith-Waterman score: 5344; 100.0% identity (100.0% similar) in 800 aa overlap (1-800:1-800)

               10        20        30        40        50        60
pF1KB9 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTTNNGPNGGGGNVAASSSTGGD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 GGTPKPTVAVSAAAPAGAAPVPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GGTPKPTVAVSAAAPAGAAPVPAAAPDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 GLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAAPDPPGTGASGATVVSGSASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GLLEEAVAGSGAPGEVDSAGAEVTSALLSRVTASAPGPAAPDPPGTGASGATVVSGSASG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 PAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 APPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILY
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB9 VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB9 CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB9 RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RDGEILASGSMDNTVRLWDAIKAFEDLETDDFTTATGHINLPENSQELLLGTYMTKSTPV
              730       740       750       760       770       780

              790       800
pF1KB9 VHLHFTRRNLVLAAGAYSPQ
       ::::::::::::::::::::
CCDS75 VHLHFTRRNLVLAAGAYSPQ
              790       800

>>CCDS1581.1 TAF5L gene_id:27097|Hs108|chr1               (589 aa)
 initn: 1266 init1: 914 opt: 1149  Z-score: 684.6  bits: 137.1 E(32554): 8.2e-32
Smith-Waterman score: 1328; 37.5% identity (65.1% similar) in 611 aa overlap (189-795:45-581)

      160       170       180       190       200       210        
pF1KB9 AAPDPPGTGASGATVVSGSASGPAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYY
                                     ...:...   . ..::   :..: .::  .
CCDS15 CYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSAAPCQAEPQQYEVQF
           20        30        40        50        60        70    

      220       230       240       250       260       270        
pF1KB9 SGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGD--QECYYQ
       . :..:.  : . :  :.  :.:::::...:.:: :. .. ..::. .:::   :.   .
CCDS15 GRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFYSRFHGMFLQNASQK
           80        90       100       110       120       130    

        280       290       300       310       320       330      
pF1KB9 DDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEH
       : .. :..    . . .:  .  :  .:.:.:...:::. : :.::  .:. . ...  :
CCDS15 DVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYNYLIRYLQSDNNTALCKVLTLH
          140       150       160       170       180       190    

        340       350       360       370       380       390      
pF1KB9 LYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENE
       ...:. .   :.  :. :     .: ..:  :.     ::                    
CCDS15 IHLDV-QPAKRTDYQLYA-----SGSSSRSENN-----GL--------------------
           200       210            220                            

        400       410       420       430       440       450      
pF1KB9 EGKPKKKKPKKDSIGSKSKKQDPNAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPD
                                ::.  .: : :..   :.    ..:. :::. :: 
CCDS15 ------------------------EPPD--MPSPILQNEAALEV---LQESIKRVKDGPP
                                     230       240          250    

        460       470       480       490       500       510      
pF1KB9 CLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQASDLSLI
        : .::::.: :. : :...... ::.:.:.:: .: ...::.  :::.:  .  :.: :
CCDS15 SLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRI
          260       270       280       290       300       310    

        520       530         540       550       560       570    
pF1KB9 DKESDDVLERIMDE--KTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQT
        . . :.::.  ::  ....:.::: :: ::::.. :  : . ::: ::: ..: :.: .
CCDS15 -HLACDILEEEDDEDDNAGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGS
           320       330       340       350       360       370   

          580       590       600       610       620       630    
pF1KB9 FTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTR
       ::  : :.:: ::::: ..:::. ::.::.:::.::::. :.  ::::.:::::::.:..
CCDS15 FTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVK
           380       390       400       410       420       430   

          640       650       660       670       680       690    
pF1KB9 FHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVL
       :::::::.::::.:.:::::.. .:: ::.::::.::. ::.:::::..::... : :. 
CCDS15 FHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLK
           440       450       460       470       480       490   

          700       710       720       730       740       750    
pF1KB9 LWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAIKAFEDLETDDFTT
       :::.. : .  ::.::::.. :: :: :. ..::.::::.::.::  ... .  .:    
CCDS15 LWDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRNTYCSAPADG---
           500       510       520       530       540       550   

          760       770       780       790       800   
pF1KB9 ATGHINLPENSQELLLGTYMTKSTPVVHLHFTRRNLVLAAGAYSPQ   
                .:.::. :.:  . . :. ..:   ::.:..:        
CCDS15 ---------SSSELV-GVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
                        560       570       580         




800 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 18:44:13 2016 done: Fri Nov  4 18:44:14 2016
 Total Scan time:  4.210 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]