Result of FASTA (omim) for
pFN21AB9623
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9623, 146 aa
1>>>pF1KB9623 146 - 146 aa - 146 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8489+/-0.000257; mu= 9.3027+/- 0.016
mean_var=73.3695+/-14.538, 0's: 0 Z-trim(121.5): 14 B-trim: 0 in 0/53
Lambda= 0.149733
statistics sampled from 38145 (38159) to 38145 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.447), width: 16
Scan time: 5.440
The best scores are: opt bits E(85289)
NP_036449 (OMIM: 300402) protein LDOC1 [Homo sapie ( 146) 991 222.1 2.4e-58
NP_001071639 (OMIM: 300213) protein FAM127A [Homo ( 113) 432 101.3 4.4e-22
NP_001035242 (OMIM: 609810) retrotransposon-derive ( 325) 185 48.2 1.3e-05
NP_001171891 (OMIM: 609810) retrotransposon-derive ( 359) 185 48.2 1.4e-05
NP_001165909 (OMIM: 609810) retrotransposon-derive ( 401) 185 48.2 1.5e-05
NP_055883 (OMIM: 609810) retrotransposon-derived p ( 708) 185 48.3 2.5e-05
NP_001171890 (OMIM: 609810) retrotransposon-derive ( 742) 185 48.3 2.6e-05
NP_001165908 (OMIM: 609810) retrotransposon-derive ( 784) 185 48.3 2.8e-05
NP_001128360 (OMIM: 611896) retrotransposon-like p (1358) 185 48.4 4.5e-05
>>NP_036449 (OMIM: 300402) protein LDOC1 [Homo sapiens] (146 aa)
initn: 991 init1: 991 opt: 991 Z-score: 1168.3 bits: 222.1 E(85289): 2.4e-58
Smith-Waterman score: 991; 100.0% identity (100.0% similar) in 146 aa overlap (1-146:1-146)
10 20 30 40 50 60
pF1KB9 MVDELVLLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRPPSCPVPFPETFNGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MVDELVLLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRPPSCPVPFPETFNGE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 SSRLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SSRLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRA
70 80 90 100 110 120
130 140
pF1KB9 FLDEMKQCFGWDDDEDDDDEEEEDDY
::::::::::::::::::::::::::
NP_036 FLDEMKQCFGWDDDEDDDDEEEEDDY
130 140
>>NP_001071639 (OMIM: 300213) protein FAM127A [Homo sapi (113 aa)
initn: 426 init1: 426 opt: 432 Z-score: 517.5 bits: 101.3 E(85289): 4.4e-22
Smith-Waterman score: 432; 58.7% identity (82.7% similar) in 104 aa overlap (37-136:9-112)
10 20 30 40 50 60
pF1KB9 LLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRPPS----CPVPFPETFNGESS
.: : .:: . :.::::::.:...
NP_001 MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTD
10 20 30
70 80 90 100 110 120
pF1KB9 RLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFL
:::::::::.:::.:.:: : .::.::.:::. ::: : .::.:::. .::.:.:::.::
NP_001 RLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIKKESPLLNDYRGFL
40 50 60 70 80 90
130 140
pF1KB9 DEMKQCFGWDDDEDDDDEEEEDDY
:::. :::..:::
NP_001 AEMKRVFGWEEDEDF
100 110
>>NP_001035242 (OMIM: 609810) retrotransposon-derived pr (325 aa)
initn: 253 init1: 182 opt: 185 Z-score: 221.9 bits: 48.2 E(85289): 1.3e-05
Smith-Waterman score: 186; 28.3% identity (52.0% similar) in 152 aa overlap (3-129:7-158)
10 20 30 40
pF1KB9 MVDELVLLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRP-PS-------
::: .. : . : ::..:. :.. :. : ..: .::.: :
NP_001 MTERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIE
10 20 30 40 50 60
50 60 70 80 90
pF1KB9 -----------------CPVPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMKVAF
:: .:: :.:. . : :..: .: . : : ..: :
NP_001 LRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCF
70 80 90 100 110 120
100 110 120 130 140
pF1KB9 LISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQCFGWDDDEDDDDEEEEDDY
. :..::.: .:. .: . .. .: ::. :::. :
NP_001 VTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGS
130 140 150 160 170 180
NP_001 VIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERR
190 200 210 220 230 240
>>NP_001171891 (OMIM: 609810) retrotransposon-derived pr (359 aa)
initn: 233 init1: 182 opt: 185 Z-score: 221.2 bits: 48.2 E(85289): 1.4e-05
Smith-Waterman score: 186; 28.3% identity (52.0% similar) in 152 aa overlap (3-129:41-192)
10 20 30
pF1KB9 MVDELVLLLHALLMRHRALSIENSQLMEQLRL
::: .. : . : ::..:. :..
NP_001 PPPPNNNNNNNSKHTGHKSACVPNMTERRRDELSEEINNLREKVMKQSEENNNLQSQVQK
20 30 40 50 60 70
40 50 60
pF1KB9 LVCERASLLRQVRP-PS------------------------CPVPFPETFNGESSRLPEF
:. : ..: .::.: : :: .:: :.:. . : :
NP_001 LTEENTTLREQVEPTPEDEDDDIELRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPF
80 90 100 110 120 130
70 80 90 100 110 120
pF1KB9 IVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQ
..: .: . : : ..: :. :..::.: .:. .: . .. .: ::. :::.
NP_001 MAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKH
140 150 160 170 180 190
130 140
pF1KB9 CFGWDDDEDDDDEEEEDDY
:
NP_001 VFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQE
200 210 220 230 240 250
>>NP_001165909 (OMIM: 609810) retrotransposon-derived pr (401 aa)
initn: 233 init1: 182 opt: 185 Z-score: 220.5 bits: 48.2 E(85289): 1.5e-05
Smith-Waterman score: 186; 28.3% identity (52.0% similar) in 152 aa overlap (3-129:83-234)
10 20 30
pF1KB9 MVDELVLLLHALLMRHRALSIENSQLMEQLRL
::: .. : . : ::..:. :..
NP_001 PPPPNNNNNNNSKHTGHKSACVPNMTERRRDELSEEINNLREKVMKQSEENNNLQSQVQK
60 70 80 90 100 110
40 50 60
pF1KB9 LVCERASLLRQVRP-PS------------------------CPVPFPETFNGESSRLPEF
:. : ..: .::.: : :: .:: :.:. . : :
NP_001 LTEENTTLREQVEPTPEDEDDDIELRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPF
120 130 140 150 160 170
70 80 90 100 110 120
pF1KB9 IVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQ
..: .: . : : ..: :. :..::.: .:. .: . .. .: ::. :::.
NP_001 MAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKH
180 190 200 210 220 230
130 140
pF1KB9 CFGWDDDEDDDDEEEEDDY
:
NP_001 VFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQE
240 250 260 270 280 290
>>NP_055883 (OMIM: 609810) retrotransposon-derived prote (708 aa)
initn: 253 init1: 182 opt: 185 Z-score: 216.6 bits: 48.3 E(85289): 2.5e-05
Smith-Waterman score: 186; 28.3% identity (52.0% similar) in 152 aa overlap (3-129:7-158)
10 20 30 40
pF1KB9 MVDELVLLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRP-PS-------
::: .. : . : ::..:. :.. :. : ..: .::.: :
NP_055 MTERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIE
10 20 30 40 50 60
50 60 70 80 90
pF1KB9 -----------------CPVPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMKVAF
:: .:: :.:. . : :..: .: . : : ..: :
NP_055 LRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCF
70 80 90 100 110 120
100 110 120 130 140
pF1KB9 LISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQCFGWDDDEDDDDEEEEDDY
. :..::.: .:. .: . .. .: ::. :::. :
NP_055 VTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGS
130 140 150 160 170 180
NP_055 VIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERR
190 200 210 220 230 240
>>NP_001171890 (OMIM: 609810) retrotransposon-derived pr (742 aa)
initn: 253 init1: 182 opt: 185 Z-score: 216.3 bits: 48.3 E(85289): 2.6e-05
Smith-Waterman score: 186; 28.3% identity (52.0% similar) in 152 aa overlap (3-129:41-192)
10 20 30
pF1KB9 MVDELVLLLHALLMRHRALSIENSQLMEQLRL
::: .. : . : ::..:. :..
NP_001 PPPPNNNNNNNSKHTGHKSACVPNMTERRRDELSEEINNLREKVMKQSEENNNLQSQVQK
20 30 40 50 60 70
40 50 60
pF1KB9 LVCERASLLRQVRP-PS------------------------CPVPFPETFNGESSRLPEF
:. : ..: .::.: : :: .:: :.:. . : :
NP_001 LTEENTTLREQVEPTPEDEDDDIELRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPF
80 90 100 110 120 130
70 80 90 100 110 120
pF1KB9 IVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQ
..: .: . : : ..: :. :..::.: .:. .: . .. .: ::. :::.
NP_001 MAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKH
140 150 160 170 180 190
130 140
pF1KB9 CFGWDDDEDDDDEEEEDDY
:
NP_001 VFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQE
200 210 220 230 240 250
>>NP_001165908 (OMIM: 609810) retrotransposon-derived pr (784 aa)
initn: 253 init1: 182 opt: 185 Z-score: 215.9 bits: 48.3 E(85289): 2.8e-05
Smith-Waterman score: 186; 28.3% identity (52.0% similar) in 152 aa overlap (3-129:83-234)
10 20 30
pF1KB9 MVDELVLLLHALLMRHRALSIENSQLMEQLRL
::: .. : . : ::..:. :..
NP_001 PPPPNNNNNNNSKHTGHKSACVPNMTERRRDELSEEINNLREKVMKQSEENNNLQSQVQK
60 70 80 90 100 110
40 50 60
pF1KB9 LVCERASLLRQVRP-PS------------------------CPVPFPETFNGESSRLPEF
:. : ..: .::.: : :: .:: :.:. . : :
NP_001 LTEENTTLREQVEPTPEDEDDDIELRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPF
120 130 140 150 160 170
70 80 90 100 110 120
pF1KB9 IVQTASYMLVNENRFCNDAMKVAFLISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQ
..: .: . : : ..: :. :..::.: .:. .: . .. .: ::. :::.
NP_001 MAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKH
180 190 200 210 220 230
130 140
pF1KB9 CFGWDDDEDDDDEEEEDDY
:
NP_001 VFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQE
240 250 260 270 280 290
>>NP_001128360 (OMIM: 611896) retrotransposon-like prote (1358 aa)
initn: 150 init1: 150 opt: 185 Z-score: 212.1 bits: 48.4 E(85289): 4.5e-05
Smith-Waterman score: 185; 30.6% identity (60.3% similar) in 121 aa overlap (9-129:163-278)
10 20 30
pF1KB9 MVDELVLLLHALLMRHRALSIENSQLMEQLRLLVCERA
: :.. .: .. ..: :: : : :.
NP_001 EEQEAHTDLKESGREETPQEQNQTEHSTAELMAMVRSIISLYFRMQDLKEQQR--VAEEI
140 150 160 170 180 190
40 50 60 70 80 90
pF1KB9 SLLRQVRPPSCPVPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLTG
:.. . . .: :. :.:. .. :::: . : :: ..:...:. :.:
NP_001 -LIKGIN--AGQLPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSG
200 210 220 230 240
100 110 120 130 140
pF1KB9 EAEEWVVPYIEMDSPILGDYRAFLDEMKQCFGWDDDEDDDDEEEEDDY
: ::. .. .::..::. :::. :.. :
NP_001 LALEWAKALLQENSPLIGDFPAFLEAMSEVFEYRQALRVAEEAMFTIRQGGRSATEYIDE
250 260 270 280 290 300
NP_001 FQSLVPILGWPDEVLQAHLCQGLNEEIRHYLFRVPQPDSLDSLIVLILQIEEKLAERRAM
310 320 330 340 350 360
146 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:46:16 2016 done: Fri Nov 4 17:46:17 2016
Total Scan time: 5.440 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]