Result of FASTA (omim) for pFN21AB9606
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9606, 359 aa
  1>>>pF1KB9606 359 - 359 aa - 359 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1560+/-0.000298; mu= 5.9399+/- 0.019
 mean_var=195.9490+/-39.145, 0's: 0 Z-trim(124.0): 19  B-trim: 2043 in 1/58
 Lambda= 0.091623
 statistics sampled from 44967 (44986) to 44967 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.527), width:  16
 Scan time:  9.480

The best scores are:                                      opt bits E(85289)
NP_006451 (OMIM: 607328) protein HEXIM1 [Homo sapi ( 359) 2466 337.6 2.6e-92
XP_016879656 (OMIM: 615695) PREDICTED: protein HEX ( 286)  454 71.5 2.6e-12
XP_016879657 (OMIM: 615695) PREDICTED: protein HEX ( 286)  454 71.5 2.6e-12
NP_001290369 (OMIM: 615695) protein HEXIM2 isoform ( 286)  454 71.5 2.6e-12
NP_001290370 (OMIM: 615695) protein HEXIM2 isoform ( 286)  454 71.5 2.6e-12
XP_016879658 (OMIM: 615695) PREDICTED: protein HEX ( 286)  454 71.5 2.6e-12
NP_001290368 (OMIM: 615695) protein HEXIM2 isoform ( 286)  454 71.5 2.6e-12
NP_001290373 (OMIM: 615695) protein HEXIM2 isoform ( 286)  454 71.5 2.6e-12
XP_011522608 (OMIM: 615695) PREDICTED: protein HEX ( 286)  454 71.5 2.6e-12
NP_001290372 (OMIM: 615695) protein HEXIM2 isoform ( 286)  454 71.5 2.6e-12
NP_001290367 (OMIM: 615695) protein HEXIM2 isoform ( 286)  454 71.5 2.6e-12
NP_653209 (OMIM: 615695) protein HEXIM2 isoform 1  ( 286)  454 71.5 2.6e-12
XP_016879659 (OMIM: 615695) PREDICTED: protein HEX ( 286)  454 71.5 2.6e-12
NP_001290371 (OMIM: 615695) protein HEXIM2 isoform ( 286)  454 71.5 2.6e-12
NP_001290366 (OMIM: 615695) protein HEXIM2 isoform ( 286)  454 71.5 2.6e-12
NP_001290365 (OMIM: 615695) protein HEXIM2 isoform ( 308)  454 71.6 2.7e-12
XP_006721750 (OMIM: 615695) PREDICTED: protein HEX ( 309)  454 71.6 2.7e-12
XP_011522609 (OMIM: 615695) PREDICTED: protein HEX ( 446)  454 71.7 3.6e-12
XP_011522610 (OMIM: 615695) PREDICTED: protein HEX ( 447)  454 71.7 3.6e-12


>>NP_006451 (OMIM: 607328) protein HEXIM1 [Homo sapiens]  (359 aa)
 initn: 2466 init1: 2466 opt: 2466  Z-score: 1778.1  bits: 337.6 E(85289): 2.6e-92
Smith-Waterman score: 2466; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)

               10        20        30        40        50        60
pF1KB9 MAEPFLSEYQHQPQTSNCTGAAAVQEELNPERPPGAEERVPEEDSRWQSRAFPQLGGRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAEPFLSEYQHQPQTSNCTGAAAVQEELNPERPPGAEERVPEEDSRWQSRAFPQLGGRPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PCHDSEASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PCHDSEASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 KQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 FMEEGGEEDGGSDGMGGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 FMEEGGEEDGGSDGMGGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSR
              250       260       270       280       290       300

              310       320       330       340       350         
pF1KB9 MEDENNRLRLESKRLGGDDARVRELELELDRLRAENLQLLTENELHRQQERAPLSKFGD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MEDENNRLRLESKRLGGDDARVRELELELDRLRAENLQLLTENELHRQQERAPLSKFGD
              310       320       330       340       350         

>>XP_016879656 (OMIM: 615695) PREDICTED: protein HEXIM2   (286 aa)
 initn: 749 init1: 396 opt: 454  Z-score: 342.1  bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)

             50        60        70        80        90            
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
                                     : ::    ::    :  :  :  :. ..  
XP_016                           MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
                                         10        20        30    

          100       110       120           130       140       150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
           .::..:   ..:   : : ::        .:.. .  .:  ::     . .  :..
XP_016 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
           40        50        60        70          80            

              160       170       180       190       200       210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
       :::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
XP_016 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
       90       100       110       120       130       140        

              220       230       240       250       260       270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
       .:.: :::.: .        . :   :.      :  : : ::: :   .:: ..:::::
XP_016 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
      150       160             170             180       190      

              280       290       300       310       320          
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
       :::.::::::. :::::...:::::: ::. :.:. ::.  .   : .. : :.::  :.
XP_016 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
        200       210       220       230       240       250      

     330       340       350         
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
       .:::.:: .:  ::..              
XP_016 QRLRTENQRLRQENQMWNREGCRCDEEPGT
        260       270       280      

>>XP_016879657 (OMIM: 615695) PREDICTED: protein HEXIM2   (286 aa)
 initn: 749 init1: 396 opt: 454  Z-score: 342.1  bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)

             50        60        70        80        90            
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
                                     : ::    ::    :  :  :  :. ..  
XP_016                           MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
                                         10        20        30    

          100       110       120           130       140       150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
           .::..:   ..:   : : ::        .:.. .  .:  ::     . .  :..
XP_016 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
           40        50        60        70          80            

              160       170       180       190       200       210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
       :::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
XP_016 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
       90       100       110       120       130       140        

              220       230       240       250       260       270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
       .:.: :::.: .        . :   :.      :  : : ::: :   .:: ..:::::
XP_016 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
      150       160             170             180       190      

              280       290       300       310       320          
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
       :::.::::::. :::::...:::::: ::. :.:. ::.  .   : .. : :.::  :.
XP_016 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
        200       210       220       230       240       250      

     330       340       350         
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
       .:::.:: .:  ::..              
XP_016 QRLRTENQRLRQENQMWNREGCRCDEEPGT
        260       270       280      

>>NP_001290369 (OMIM: 615695) protein HEXIM2 isoform 1 [  (286 aa)
 initn: 749 init1: 396 opt: 454  Z-score: 342.1  bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)

             50        60        70        80        90            
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
                                     : ::    ::    :  :  :  :. ..  
NP_001                           MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
                                         10        20        30    

          100       110       120           130       140       150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
           .::..:   ..:   : : ::        .:.. .  .:  ::     . .  :..
NP_001 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
           40        50        60        70          80            

              160       170       180       190       200       210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
       :::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
NP_001 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
       90       100       110       120       130       140        

              220       230       240       250       260       270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
       .:.: :::.: .        . :   :.      :  : : ::: :   .:: ..:::::
NP_001 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
      150       160             170             180       190      

              280       290       300       310       320          
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
       :::.::::::. :::::...:::::: ::. :.:. ::.  .   : .. : :.::  :.
NP_001 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
        200       210       220       230       240       250      

     330       340       350         
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
       .:::.:: .:  ::..              
NP_001 QRLRTENQRLRQENQMWNREGCRCDEEPGT
        260       270       280      

>>NP_001290370 (OMIM: 615695) protein HEXIM2 isoform 1 [  (286 aa)
 initn: 749 init1: 396 opt: 454  Z-score: 342.1  bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)

             50        60        70        80        90            
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
                                     : ::    ::    :  :  :  :. ..  
NP_001                           MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
                                         10        20        30    

          100       110       120           130       140       150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
           .::..:   ..:   : : ::        .:.. .  .:  ::     . .  :..
NP_001 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
           40        50        60        70          80            

              160       170       180       190       200       210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
       :::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
NP_001 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
       90       100       110       120       130       140        

              220       230       240       250       260       270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
       .:.: :::.: .        . :   :.      :  : : ::: :   .:: ..:::::
NP_001 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
      150       160             170             180       190      

              280       290       300       310       320          
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
       :::.::::::. :::::...:::::: ::. :.:. ::.  .   : .. : :.::  :.
NP_001 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
        200       210       220       230       240       250      

     330       340       350         
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
       .:::.:: .:  ::..              
NP_001 QRLRTENQRLRQENQMWNREGCRCDEEPGT
        260       270       280      

>>XP_016879658 (OMIM: 615695) PREDICTED: protein HEXIM2   (286 aa)
 initn: 749 init1: 396 opt: 454  Z-score: 342.1  bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)

             50        60        70        80        90            
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
                                     : ::    ::    :  :  :  :. ..  
XP_016                           MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
                                         10        20        30    

          100       110       120           130       140       150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
           .::..:   ..:   : : ::        .:.. .  .:  ::     . .  :..
XP_016 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
           40        50        60        70          80            

              160       170       180       190       200       210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
       :::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
XP_016 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
       90       100       110       120       130       140        

              220       230       240       250       260       270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
       .:.: :::.: .        . :   :.      :  : : ::: :   .:: ..:::::
XP_016 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
      150       160             170             180       190      

              280       290       300       310       320          
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
       :::.::::::. :::::...:::::: ::. :.:. ::.  .   : .. : :.::  :.
XP_016 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
        200       210       220       230       240       250      

     330       340       350         
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
       .:::.:: .:  ::..              
XP_016 QRLRTENQRLRQENQMWNREGCRCDEEPGT
        260       270       280      

>>NP_001290368 (OMIM: 615695) protein HEXIM2 isoform 1 [  (286 aa)
 initn: 749 init1: 396 opt: 454  Z-score: 342.1  bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)

             50        60        70        80        90            
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
                                     : ::    ::    :  :  :  :. ..  
NP_001                           MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
                                         10        20        30    

          100       110       120           130       140       150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
           .::..:   ..:   : : ::        .:.. .  .:  ::     . .  :..
NP_001 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
           40        50        60        70          80            

              160       170       180       190       200       210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
       :::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
NP_001 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
       90       100       110       120       130       140        

              220       230       240       250       260       270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
       .:.: :::.: .        . :   :.      :  : : ::: :   .:: ..:::::
NP_001 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
      150       160             170             180       190      

              280       290       300       310       320          
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
       :::.::::::. :::::...:::::: ::. :.:. ::.  .   : .. : :.::  :.
NP_001 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
        200       210       220       230       240       250      

     330       340       350         
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
       .:::.:: .:  ::..              
NP_001 QRLRTENQRLRQENQMWNREGCRCDEEPGT
        260       270       280      

>>NP_001290373 (OMIM: 615695) protein HEXIM2 isoform 1 [  (286 aa)
 initn: 749 init1: 396 opt: 454  Z-score: 342.1  bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)

             50        60        70        80        90            
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
                                     : ::    ::    :  :  :  :. ..  
NP_001                           MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
                                         10        20        30    

          100       110       120           130       140       150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
           .::..:   ..:   : : ::        .:.. .  .:  ::     . .  :..
NP_001 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
           40        50        60        70          80            

              160       170       180       190       200       210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
       :::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
NP_001 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
       90       100       110       120       130       140        

              220       230       240       250       260       270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
       .:.: :::.: .        . :   :.      :  : : ::: :   .:: ..:::::
NP_001 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
      150       160             170             180       190      

              280       290       300       310       320          
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
       :::.::::::. :::::...:::::: ::. :.:. ::.  .   : .. : :.::  :.
NP_001 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
        200       210       220       230       240       250      

     330       340       350         
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
       .:::.:: .:  ::..              
NP_001 QRLRTENQRLRQENQMWNREGCRCDEEPGT
        260       270       280      

>>XP_011522608 (OMIM: 615695) PREDICTED: protein HEXIM2   (286 aa)
 initn: 749 init1: 396 opt: 454  Z-score: 342.1  bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)

             50        60        70        80        90            
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
                                     : ::    ::    :  :  :  :. ..  
XP_011                           MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
                                         10        20        30    

          100       110       120           130       140       150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
           .::..:   ..:   : : ::        .:.. .  .:  ::     . .  :..
XP_011 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
           40        50        60        70          80            

              160       170       180       190       200       210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
       :::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
XP_011 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
       90       100       110       120       130       140        

              220       230       240       250       260       270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
       .:.: :::.: .        . :   :.      :  : : ::: :   .:: ..:::::
XP_011 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
      150       160             170             180       190      

              280       290       300       310       320          
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
       :::.::::::. :::::...:::::: ::. :.:. ::.  .   : .. : :.::  :.
XP_011 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
        200       210       220       230       240       250      

     330       340       350         
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
       .:::.:: .:  ::..              
XP_011 QRLRTENQRLRQENQMWNREGCRCDEEPGT
        260       270       280      

>>NP_001290372 (OMIM: 615695) protein HEXIM2 isoform 1 [  (286 aa)
 initn: 749 init1: 396 opt: 454  Z-score: 342.1  bits: 71.5 E(85289): 2.6e-12
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)

             50        60        70        80        90            
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
                                     : ::    ::    :  :  :  :. ..  
NP_001                           MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
                                         10        20        30    

          100       110       120           130       140       150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
           .::..:   ..:   : : ::        .:.. .  .:  ::     . .  :..
NP_001 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
           40        50        60        70          80            

              160       170       180       190       200       210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
       :::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
NP_001 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
       90       100       110       120       130       140        

              220       230       240       250       260       270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
       .:.: :::.: .        . :   :.      :  : : ::: :   .:: ..:::::
NP_001 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
      150       160             170             180       190      

              280       290       300       310       320          
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
       :::.::::::. :::::...:::::: ::. :.:. ::.  .   : .. : :.::  :.
NP_001 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
        200       210       220       230       240       250      

     330       340       350         
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
       .:::.:: .:  ::..              
NP_001 QRLRTENQRLRQENQMWNREGCRCDEEPGT
        260       270       280      




359 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:38:34 2016 done: Fri Nov  4 17:38:35 2016
 Total Scan time:  9.480 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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