FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9606, 359 aa
  1>>>pF1KB9606 359 - 359 aa - 359 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0817+/-0.000738; mu= 6.6039+/- 0.045
 mean_var=190.7908+/-37.218, 0's: 0 Z-trim(116.3): 5  B-trim: 0 in 0/54
 Lambda= 0.092853
 statistics sampled from 16895 (16897) to 16895 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.818), E-opt: 0.2 (0.519), width:  16
 Scan time:  3.480

The best scores are:                                      opt bits E(32554)
CCDS11495.1 HEXIM1 gene_id:10614|Hs108|chr17       ( 359) 2466 341.8 5.2e-94
CCDS11496.1 HEXIM2 gene_id:124790|Hs108|chr17      ( 286)  454 72.2   6e-13


>>CCDS11495.1 HEXIM1 gene_id:10614|Hs108|chr17            (359 aa)
 initn: 2466 init1: 2466 opt: 2466  Z-score: 1801.2  bits: 341.8 E(32554): 5.2e-94
Smith-Waterman score: 2466; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)

               10        20        30        40        50        60
pF1KB9 MAEPFLSEYQHQPQTSNCTGAAAVQEELNPERPPGAEERVPEEDSRWQSRAFPQLGGRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAEPFLSEYQHQPQTSNCTGAAAVQEELNPERPPGAEERVPEEDSRWQSRAFPQLGGRPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 PEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PEGEGSLESQPPPLQTQACPESSCLREGEKGQNGDDSSAGGDFPPPAEVEPTPEAELLAQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 PCHDSEASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PCHDSEASKLGAPAAGGEEEWGQQQRQLGKKKHRRRPSKKKRHWKPYYKLTWEEKKKFDE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 KQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KQSLRASRIRAEMFAKGQPVAPYNTTQFLMDDHDQEEPDLKTGLYSKRAAAKSDDTSDDD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 FMEEGGEEDGGSDGMGGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FMEEGGEEDGGSDGMGGDGSEFLQRDFSETYERYHTESLQNMSKQELIKEYLELEKCLSR
              250       260       270       280       290       300

              310       320       330       340       350         
pF1KB9 MEDENNRLRLESKRLGGDDARVRELELELDRLRAENLQLLTENELHRQQERAPLSKFGD
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEDENNRLRLESKRLGGDDARVRELELELDRLRAENLQLLTENELHRQQERAPLSKFGD
              310       320       330       340       350         

>>CCDS11496.1 HEXIM2 gene_id:124790|Hs108|chr17           (286 aa)
 initn: 749 init1: 396 opt: 454  Z-score: 345.9  bits: 72.2 E(32554): 6e-13
Smith-Waterman score: 683; 45.8% identity (64.3% similar) in 286 aa overlap (73-345:5-272)

             50        60        70        80        90            
pF1KB9 EDSRWQSRAFPQLGGRPGPEGEGSLESQPPPLQTQACPESSCLREGEK--GQNGDDSS--
                                     : ::    ::    :  :  :  :. ..  
CCDS11                           MMATPNQTACNAESPVALEEAKTSGAPGSPQTPP
                                         10        20        30    

          100       110       120           130       140       150
pF1KB9 ----AGGDFPPPAEVEPTPEAELLAQPCH----DSEASKLGAPAAGGEEEWGQQQRQLGK
           .::..:   ..:   : : ::        .:.. .  .:  ::     . .  :..
CCDS11 ERHDSGGSLPLTPRMESHSEDEDLAGAVGGLGWNSRSPRTQSP--GGC----SAEAVLAR
           40        50        60        70          80            

              160       170       180       190       200       210
pF1KB9 KKHRRRPSKKKRHWKPYYKLTWEEKKKFDEKQSLRASRIRAEMFAKGQPVAPYNTTQFLM
       :::::::::.::::.:: .:.: ::.. ::.:: ::::.: :::::::::::::::::::
CCDS11 KKHRRRPSKRKRHWRPYLELSWAEKQQRDERQSQRASRVREEMFAKGQPVAPYNTTQFLM
       90       100       110       120       130       140        

              220       230       240       250       260       270
pF1KB9 DDHDQEEPDLKTGLYSKRAAAKSDDTSDDDFMEEGGEEDGGSDGMGGDGSEFLQRDFSET
       .:.: :::.: .        . :   :.      :  : : ::: :   .:: ..:::::
CCDS11 NDRDPEEPNLDV------PHGISHPGSS------GESEAGDSDGRGRAHGEFQRKDFSET
      150       160             170             180       190      

              280       290       300       310       320          
pF1KB9 YERYHTESLQNMSKQELIKEYLELEKCLSRMEDENNRLRLESKRLGGDDAR-VRELELEL
       :::.::::::. :::::...:::::: ::. :.:. ::.  .   : .. : :.::  :.
CCDS11 YERFHTESLQGRSKQELVRDYLELEKRLSQAEEETRRLQQLQACTGQQSCRQVEELAAEV
        200       210       220       230       240       250      

     330       340       350         
pF1KB9 DRLRAENLQLLTENELHRQQERAPLSKFGD
       .:::.:: .:  ::..              
CCDS11 QRLRTENQRLRQENQMWNREGCRCDEEPGT
        260       270       280      




359 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:38:33 2016 done: Fri Nov  4 17:38:34 2016
 Total Scan time:  3.480 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]