FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9553, 261 aa
  1>>>pF1KB9553 261 - 261 aa - 261 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2540+/-0.000787; mu= 8.8414+/- 0.048
 mean_var=164.9654+/-32.445, 0's: 0 Z-trim(114.9): 31  B-trim: 0 in 0/53
 Lambda= 0.099857
 statistics sampled from 15455 (15481) to 15455 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.476), width:  16
 Scan time:  2.850

The best scores are:                                      opt bits E(32554)
CCDS13847.1 XBP1 gene_id:7494|Hs108|chr22          ( 261) 1732 260.4 9.1e-70


>>CCDS13847.1 XBP1 gene_id:7494|Hs108|chr22               (261 aa)
 initn: 1732 init1: 1732 opt: 1732  Z-score: 1366.0  bits: 260.4 E(32554): 9.1e-70
Smith-Waterman score: 1732; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261)

               10        20        30        40        50        60
pF1KB9 MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQRGASPEAASGGLPQARK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVVVAAAPNPADGTPKVLLLSGQPASAAGAPAGQALPLMVPAQRGASPEAASGGLPQARK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 EKTHGLVVENQELRQRLGMDALVAEEEAEAKGNEVRPVAGSAESAALRLRAPLQQVQAQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EKTHGLVVENQELRQRLGMDALVAEEEAEAKGNEVRPVAGSAESAALRLRAPLQQVQAQL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SPLQNISPWILAVLTLQIQSLISCWAFWTTWTQSCSSNALPQSLPAWRSSQRSTQKDPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SPLQNISPWILAVLTLQIQSLISCWAFWTTWTQSCSSNALPQSLPAWRSSQRSTQKDPVP
              190       200       210       220       230       240

              250       260 
pF1KB9 YQPPFLCQWGRHQPSWKPLMN
       :::::::::::::::::::::
CCDS13 YQPPFLCQWGRHQPSWKPLMN
              250       260 




261 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:12:37 2016 done: Fri Nov  4 17:12:37 2016
 Total Scan time:  2.850 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]