FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9542, 290 aa
  1>>>pF1KB9542 290 - 290 aa - 290 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7112+/-0.000764; mu= 14.3984+/- 0.046
 mean_var=83.5197+/-16.435, 0's: 0 Z-trim(110.7): 8  B-trim: 254 in 1/49
 Lambda= 0.140339
 statistics sampled from 11786 (11788) to 11786 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.362), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS13848.1 C22orf31 gene_id:25770|Hs108|chr22     ( 290) 1963 406.6 1.1e-113


>>CCDS13848.1 C22orf31 gene_id:25770|Hs108|chr22          (290 aa)
 initn: 1963 init1: 1963 opt: 1963  Z-score: 2154.7  bits: 406.6 E(32554): 1.1e-113
Smith-Waterman score: 1963; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)

               10        20        30        40        50        60
pF1KB9 MHPINVRRDPSIPIYGLRQSILLNTRLQDCYVDSPALTNIWMARTCAKQNINAPAPATTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MHPINVRRDPSIPIYGLRQSILLNTRLQDCYVDSPALTNIWMARTCAKQNINAPAPATTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 SWEVVRNPLIASSFSLVKLVLRRQLKNKCCPPPCKFGEGKLSKRLKHKDDSVMKATQQAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SWEVVRNPLIASSFSLVKLVLRRQLKNKCCPPPCKFGEGKLSKRLKHKDDSVMKATQQAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 KRNFISSKSKQPAGHRRPAGGIRESKESSKEKKLTVRQDLEDRYAEHVAATQALPQDSGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KRNFISSKSKQPAGHRRPAGGIRESKESSKEKKLTVRQDLEDRYAEHVAATQALPQDSGT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 AAWKGRVLLPETQKRQQLSEDTLTIHGLPTEGYQALYHAVVEPMLWNPSGTPKRYSLELG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AAWKGRVLLPETQKRQQLSEDTLTIHGLPTEGYQALYHAVVEPMLWNPSGTPKRYSLELG
              190       200       210       220       230       240

              250       260       270       280       290
pF1KB9 KAIKQKLWEALCSQGAISEGAQRDRFPGRKQPGVHEEPVLKKWPKLKSKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KAIKQKLWEALCSQGAISEGAQRDRFPGRKQPGVHEEPVLKKWPKLKSKK
              250       260       270       280       290




290 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 17:07:26 2016 done: Fri Nov  4 17:07:26 2016
 Total Scan time:  2.660 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]