Result of FASTA (ccds) for
pFN21AB8993
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8993, 401 aa
1>>>pF1KB8993 401 - 401 aa - 401 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3186+/-0.000829; mu= 12.8123+/- 0.051
mean_var=85.9818+/-17.223, 0's: 0 Z-trim(108.8): 23 B-trim: 0 in 0/51
Lambda= 0.138316
statistics sampled from 10416 (10438) to 10416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.321), width: 16
Scan time: 2.490
The best scores are: opt bits E(32554)
CCDS35475.1 HSFY1 gene_id:86614|Hs108|chrY ( 401) 2641 536.7 1.5e-152
CCDS14791.1 HSFY2 gene_id:159119|Hs108|chrY ( 401) 2641 536.7 1.5e-152
CCDS14790.1 HSFY1 gene_id:86614|Hs108|chrY ( 203) 1125 234.0 9.5e-62
CCDS35476.1 HSFY2 gene_id:159119|Hs108|chrY ( 203) 1125 234.0 9.5e-62
CCDS44011.1 HSFX1 gene_id:100506164|Hs108|chrX ( 423) 512 111.8 1.2e-24
CCDS48179.1 HSFX2 gene_id:100130086|Hs108|chrX ( 423) 512 111.8 1.2e-24
CCDS83499.1 LOC101928917 gene_id:101928917|Hs108|c ( 333) 331 75.7 7.2e-14
>>CCDS35475.1 HSFY1 gene_id:86614|Hs108|chrY (401 aa)
initn: 2641 init1: 2641 opt: 2641 Z-score: 2852.4 bits: 536.7 E(32554): 1.5e-152
Smith-Waterman score: 2641; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)
10 20 30 40 50 60
pF1KB8 MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 APYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 APYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 KRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAAEASEESLFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAAEASEESLFS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ASKNLNMPLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHAILNQLTTIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ASKNLNMPLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHAILNQLTTIH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 MHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEPSAVPTRYPLVSVNEAPYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEPSAVPTRYPLVSVNEAPYR
310 320 330 340 350 360
370 380 390 400
pF1KB8 NMLPAGNPWLQMPTIADRSAAPHSRLALQPSPLDKYHPNYN
:::::::::::::::::::::::::::::::::::::::::
CCDS35 NMLPAGNPWLQMPTIADRSAAPHSRLALQPSPLDKYHPNYN
370 380 390 400
>>CCDS14791.1 HSFY2 gene_id:159119|Hs108|chrY (401 aa)
initn: 2641 init1: 2641 opt: 2641 Z-score: 2852.4 bits: 536.7 E(32554): 1.5e-152
Smith-Waterman score: 2641; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)
10 20 30 40 50 60
pF1KB8 MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 APYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 APYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 KRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAAEASEESLFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAAEASEESLFS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ASKNLNMPLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHAILNQLTTIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ASKNLNMPLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHAILNQLTTIH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 MHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEPSAVPTRYPLVSVNEAPYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEPSAVPTRYPLVSVNEAPYR
310 320 330 340 350 360
370 380 390 400
pF1KB8 NMLPAGNPWLQMPTIADRSAAPHSRLALQPSPLDKYHPNYN
:::::::::::::::::::::::::::::::::::::::::
CCDS14 NMLPAGNPWLQMPTIADRSAAPHSRLALQPSPLDKYHPNYN
370 380 390 400
>>CCDS14790.1 HSFY1 gene_id:86614|Hs108|chrY (203 aa)
initn: 1143 init1: 1125 opt: 1125 Z-score: 1222.1 bits: 234.0 E(32554): 9.5e-62
Smith-Waterman score: 1125; 98.9% identity (100.0% similar) in 174 aa overlap (1-174:1-174)
10 20 30 40 50 60
pF1KB8 MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 APYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNF
:::::::::::::::::::::::::::::::::::::::::::::::::::..:
CCDS14 APYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKIRFTKMKLS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 KRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAAEASEESLFS
CCDS14 RSSTYENRYLCCNLHLKDESNYS
190 200
>>CCDS35476.1 HSFY2 gene_id:159119|Hs108|chrY (203 aa)
initn: 1143 init1: 1125 opt: 1125 Z-score: 1222.1 bits: 234.0 E(32554): 9.5e-62
Smith-Waterman score: 1125; 98.9% identity (100.0% similar) in 174 aa overlap (1-174:1-174)
10 20 30 40 50 60
pF1KB8 MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 APYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNF
:::::::::::::::::::::::::::::::::::::::::::::::::::..:
CCDS35 APYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKIRFTKMKLS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 KRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAAEASEESLFS
CCDS35 RSSTYENRYLCCNLHLKDESNYS
190 200
>>CCDS44011.1 HSFX1 gene_id:100506164|Hs108|chrX (423 aa)
initn: 496 init1: 300 opt: 512 Z-score: 556.0 bits: 111.8 E(32554): 1.2e-24
Smith-Waterman score: 563; 35.9% identity (59.5% similar) in 370 aa overlap (35-397:55-395)
10 20 30 40 50 60
pF1KB8 SSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESPSYTV
:. .:: . :: ::: :.. . .. :
CCDS44 ERVPFPPQLQSETYLHPADPSPAWDDPGSTGSPNLRLLTEEIAFQPLAEEASFRRPHPDG
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB8 CVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETKAPYR
: :. .:..::: ::.:::..: :.::.:: ::..:.: :::..::.::::. . ..
CCDS44 DVP-PQGEDNLLSLPFPQKLWRLVSSNQFSSIWWDDSGACRVINQKLFEKEILKRDVAHK
90 100 110 120 130 140
130 140 150 160 170 180
pF1KB8 IFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNFKRGY
.: : .:::: :::::::: : .: :. : : : .. :.:.::.:: .: :.:
CCDS44 VFATTSIKSFFRQLNLYGFRKRRQCTFRT-FTRIF-SAKRLVSILNKLEFYCHPYFQRDS
150 160 170 180 190 200
190 200 210 220 230 240
pF1KB8 PQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALA-AEASEESLFSASK
:.::::.:::.:::.: : .:: : :: : :: :.. ... : ..
CCDS44 PHLLVRMKRRVGVKSA-PRHQ--EED---KPEAAG-------SCLAPADTEQQDHTSPNE
210 220 230 240
250 260 270 280 290 300
pF1KB8 NLNM-PLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHAILNQLTTIHMH
: .. : :: :. .. :::: ::. . : :. .:.:. . .
CCDS44 NDQVTPQHREP------AGPNTQIRSGSAPPATPVMV-PDSAVASDNSPVTQPAGEWSEG
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 S--HSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVE-PSAVPTRYPL-VSVNEAP
: : : . : : .. : :: : . .: .: :.: .: : .... :
CCDS44 SQAHVTPVAA----VPGPAALPFLYVPGSPTQMNSYGPVVALPTA--SRSTLAMDTTGLP
310 320 330 340 350
360 370 380 390 400
pF1KB8 YRNMLPAGNPWLQMPTIADRSAAPHSRLALQPS-PLDKYHPNYN
.::: . :. . .: .: : . ... : : ..:
CCDS44 APGMLPFCHLWVPVTLVAAGAAQPAASMVMFPHLPALHHHCPHSHRTSQYMPASDGPQAY
360 370 380 390 400 410
CCDS44 PDYADQST
420
>>CCDS48179.1 HSFX2 gene_id:100130086|Hs108|chrX (423 aa)
initn: 496 init1: 300 opt: 512 Z-score: 556.0 bits: 111.8 E(32554): 1.2e-24
Smith-Waterman score: 563; 35.9% identity (59.5% similar) in 370 aa overlap (35-397:55-395)
10 20 30 40 50 60
pF1KB8 SSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESPSYTV
:. .:: . :: ::: :.. . .. :
CCDS48 ERVPFPPQLQSETYLHPADPSPAWDDPGSTGSPNLRLLTEEIAFQPLAEEASFRRPHPDG
30 40 50 60 70 80
70 80 90 100 110 120
pF1KB8 CVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETKAPYR
: :. .:..::: ::.:::..: :.::.:: ::..:.: :::..::.::::. . ..
CCDS48 DVP-PQGEDNLLSLPFPQKLWRLVSSNQFSSIWWDDSGACRVINQKLFEKEILKRDVAHK
90 100 110 120 130 140
130 140 150 160 170 180
pF1KB8 IFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNFKRGY
.: : .:::: :::::::: : .: :. : : : .. :.:.::.:: .: :.:
CCDS48 VFATTSIKSFFRQLNLYGFRKRRQCTFRT-FTRIF-SAKRLVSILNKLEFYCHPYFQRDS
150 160 170 180 190 200
190 200 210 220 230 240
pF1KB8 PQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALA-AEASEESLFSASK
:.::::.:::.:::.: : .:: : :: : :: :.. ... : ..
CCDS48 PHLLVRMKRRVGVKSA-PRHQ--EED---KPEAAG-------SCLAPADTEQQDHTSPNE
210 220 230 240
250 260 270 280 290 300
pF1KB8 NLNM-PLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHAILNQLTTIHMH
: .. : :: :. .. :::: ::. . : :. .:.:. . .
CCDS48 NDQVTPQHREP------AGPNTQIRSGSAPPATPVMV-PDSAVASDNSPVTQPAGEWSEG
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 S--HSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVE-PSAVPTRYPL-VSVNEAP
: : : . : : .. : :: : . .: .: :.: .: : .... :
CCDS48 SQAHVTPVAA----VPGPAALPFLYVPGSPTQMNSYGPVVALPTA--SRSTLAMDTTGLP
310 320 330 340 350
360 370 380 390 400
pF1KB8 YRNMLPAGNPWLQMPTIADRSAAPHSRLALQPS-PLDKYHPNYN
.::: . :. . .: .: : . ... : : ..:
CCDS48 APGMLPFCHLWVPVTLVAAGAAQPAASMVMFPHLPALHHHCPHSHRTSQYMPASDGPQAY
360 370 380 390 400 410
CCDS48 PDYADQST
420
>>CCDS83499.1 LOC101928917 gene_id:101928917|Hs108|chrX (333 aa)
initn: 328 init1: 307 opt: 331 Z-score: 362.4 bits: 75.7 E(32554): 7.2e-14
Smith-Waterman score: 377; 25.8% identity (57.4% similar) in 357 aa overlap (1-350:1-327)
10 20 30 40 50
pF1KB8 MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQ--GSLLE
:: ..: . . ...: .. .: : . : ....: :..:: :: .
CCDS83 MASQNTEQEYEAKLAPSVGGEPTSGGPSGSSPDP-NPDSSEVLDRHEDQAMSQDPGSQDN
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 SP--SYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEI
:: . . : . . . ... :.:::::: ::: : :::.::...: ..:...::..:.
CCDS83 SPPEDRNQRVVNVEDNHNLFRLSFPRKLWTIVEEDTFKSVSWNDDGDAVIIDKDLFQREV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 LETKAPYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYY
:. :. :::.::.. ::.:::::::: : .. ..: .:. .:
CCDS83 LQRKGAERIFKTDSLTSFIRQLNLYGFCK---------------TRPSNSPGNKKMMIYC
120 130 140 150 160
180 190 200 210 220 230
pF1KB8 NPNFKRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAAEA---
: ::.: :.:: ..:. ...:.. .: :. . ... .. ::
CCDS83 NSNFQRDKPRLLENIQRKDALRNTAQQATRVPTPKRKNLVATRRSLRIYHINARKEAIKM
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB8 SEESLFSASKNLNMPLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHAIL
... :.. . :.:.. . . . :. .: :: :. ::: . .:. .. .
CCDS83 CQQGAPSVQGPSGTQSFRRSGMWSKKSATRHPLGNG-PPQEPN---GPSWE-GTSGNVTF
230 240 250 260 270
300 310 320 330 340 350
pF1KB8 NQLTTIHMHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEPSAVPTRYPLVS
.. : .:.:.. : . ... . ... ..: . :..: . :.. :
CCDS83 TS-------SATTWMEGTGILSSLVYSDNGS--VMSLYNICYYALLASLSVMSPNEPSDD
280 290 300 310 320 330
360 370 380 390 400
pF1KB8 VNEAPYRNMLPAGNPWLQMPTIADRSAAPHSRLALQPSPLDKYHPNYN
CCDS83 EEE
401 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:54:22 2016 done: Fri Nov 4 16:54:22 2016
Total Scan time: 2.490 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]