(Circular) (Six-base) MAPSORT of: pFN21AB8876.seq Check: 7875 from: 1 to: 5206 pFN21AB8876 5206 bp With 182 enzymes: SgfI * January 16, 2009 15:27 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3016 278 Size: 53 83 186 936 1480 2468 Fragments arranged by size: 2468 1480 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2247 2549 1937 Size: 310 302 4594 Fragments arranged by size: 4594 310 302 Acc65I G'GTAC_C Cuts at: 2527 2527 Size: 5206 AclI AA'CG_TT Cuts at: 1563 3333 3706 1563 Size: 1770 373 3063 Fragments arranged by size: 3063 1770 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2400 3269 4653 4921 1632 Size: 768 869 1384 268 1917 Fragments arranged by size: 1917 1384 869 768 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5009 AflIII A'CryG_T Cuts at: 1203 4105 5082 1203 Size: 2902 977 1327 Fragments arranged by size: 2902 1327 977 AgeI A'CCGG_T Cuts at: 2177 4037 2177 Size: 1860 3346 AhdI GACnn_n'nnGTC Cuts at: 3935 3935 Size: 5206 AleI CACnn'nnGTG Cuts at: 1166 2432 1166 Size: 1266 3940 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5206 AlwNI CAG_nnn'CTG Cuts at: 2239 2949 4521 2239 Size: 710 1572 2924 Fragments arranged by size: 2924 1572 710 ApaLI G'TGCA_C Cuts at: 3263 4419 3263 Size: 1156 4050 ApoI r'AATT_y Cuts at: 1493 2515 2741 2893 5002 1493 Size: 1022 226 152 2109 1697 Fragments arranged by size: 2109 1697 1022 226 152 AseI AT'TA_AT Cuts at: 160 1032 3760 160 Size: 872 2728 1606 Fragments arranged by size: 2728 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5206 AvaI C'yCGr_G Cuts at: 1870 1943 2531 1870 Size: 73 588 4545 Fragments arranged by size: 4545 588 73 BamHI G'GATC_C Cuts at: 2536 2903 2536 Size: 367 4839 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2527 3982 618 Size: 325 217 627 740 1455 1842 Fragments arranged by size: 1842 1455 740 627 325 217 BanII G_rGCy'C Cuts at: 1391 2202 2525 1391 Size: 811 323 4072 Fragments arranged by size: 4072 811 323 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4235 BbvCI CC'TCA_GC Cuts at: 2492 2492 Size: 5206 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3397 3431 1903 Size: 34 50 34 1376 34 3678 Fragments arranged by size: 3678 1376 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3098 4308 3098 Size: 1210 3996 BclI T'GATC_A Cuts at: 1548 1548 Size: 5206 BfrBI ATG'CAT Cuts at: 2008 2008 Size: 5206 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3817 136 Size: 107 122 71 631 605 2145 1525 Fragments arranged by size: 2145 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5201 5201 Size: 5206 BlpI GC'TnA_GC Cuts at: 2623 2623 Size: 5206 Bme1580I G_kGCm'C Cuts at: 1790 2073 3267 4423 1790 Size: 283 1194 1156 2573 Fragments arranged by size: 2573 1194 1156 283 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5206 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2937 3895 442 Size: 416 53 83 399 24 1520 958 1753 Fragments arranged by size: 1753 1520 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5206 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2327 2399 3866 1239 Size: 1088 72 1467 2579 Fragments arranged by size: 2579 1467 1088 72 Bpu10I CC'TnA_GC Cuts at: 2444 2492 2444 Size: 48 5158 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3331 4196 4494 3331 Size: 865 298 4043 Fragments arranged by size: 4043 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2375 2466 3869 882 Size: 617 876 91 1403 2219 Fragments arranged by size: 2219 1403 876 617 91 BsaAI yAC'GTr Cuts at: 493 1204 2332 2997 493 Size: 711 1128 665 2702 Fragments arranged by size: 2702 1128 711 665 BsaBI GATnn'nnATC Cuts at: 5200 5200 Size: 5206 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3013 3395 4030 275 Size: 53 83 186 936 1480 382 635 1451 Fragments arranged by size: 1480 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2177 3639 4037 4311 4458 4869 2177 Size: 1462 398 274 147 411 2514 Fragments arranged by size: 2514 1462 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4981 Fragments arranged by size: 4981 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2149 1186 Size: 963 4243 BseYI C'CCAG_C Cuts at: 4409 4905 4409 Size: 496 4710 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4633 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2656 3417 4445 1540 Size: 275 186 655 761 1028 2301 Fragments arranged by size: 2301 1028 761 655 275 186 BsiHKAI G_wGCw'C Cuts at: 3267 3352 4423 3267 Size: 85 1071 4050 Fragments arranged by size: 4050 1071 85 BsmI GAATG_Cn' Cuts at: 2717 2810 2717 Size: 93 5113 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2073 2202 2525 3267 3352 4423 1391 Size: 399 283 129 323 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 323 283 129 85 BspEI T'CCGG_A Cuts at: 4869 4869 Size: 5206 BspHI T'CATG_A Cuts at: 3095 4825 3095 Size: 1730 3476 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2561 844 Size: 1717 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3093 1394 Size: 429 1270 3507 Fragments arranged by size: 3507 1270 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3701 3875 65 Size: 1183 2453 174 1396 Fragments arranged by size: 2453 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2177 3850 4037 1700 Size: 110 367 1673 187 2869 Fragments arranged by size: 2869 1673 367 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5206 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5206 BssSI C'ACGA_G Cuts at: 3266 4278 3266 Size: 1012 4194 BstAPI GCAn_nnn'nTGC Cuts at: 794 2473 794 Size: 1679 3527 BstBI TT'CG_AA Cuts at: 4010 4010 Size: 5206 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5206 BstXI CCAn_nnnn'nTGG Cuts at: 2305 2377 2434 2305 Size: 72 57 5077 Fragments arranged by size: 5077 72 57 BstYI r'GATC_y Cuts at: 1972 2256 2320 2536 2903 3288 3305 4757 4843 Size: 284 64 216 367 385 17 1452 86 Cuts at: 4843 4855 5201 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 385 367 346 284 216 86 64 17 12 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4654 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4467 Fragments arranged by size: 4467 683 56 BtsI GCAGTG_nn' Cuts at: 2722 3516 3536 2722 Size: 794 20 4392 Fragments arranged by size: 4392 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5206 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5171 DraI TTT'AAA Cuts at: 2510 2510 Size: 5206 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4213 809 Size: 507 2897 1802 Fragments arranged by size: 2897 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2653 3542 5171 Size: 54 1425 50 275 18 823 889 1629 Cuts at: 5171 8 Size: 43 Fragments arranged by size: 1629 1425 889 823 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2653 1537 Size: 275 841 4090 Fragments arranged by size: 4090 841 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3136 1353 Size: 1783 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3793 4167 4313 387 Size: 1064 138 2204 374 146 1280 Fragments arranged by size: 2204 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2327 2399 2400 3269 3866 4653 4921 Size: 393 695 72 1 869 597 787 268 Cuts at: 4921 1239 Size: 1524 Fragments arranged by size: 1524 869 787 695 597 393 268 72 1 EcoRI G'AATT_C Cuts at: 2515 2893 2515 Size: 378 4828 FspI TGC'GCA Cuts at: 3712 3712 Size: 5206 HaeII r_GCGC'y Cuts at: 1678 4353 1678 Size: 2675 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3847 3879 3921 3953 1373 Size: 32 135 32 2275 32 42 32 2626 Fragments arranged by size: 2626 2275 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2550 2796 669 Size: 988 281 612 246 3079 Fragments arranged by size: 3079 988 612 281 246 HindIII A'AGCT_T Cuts at: 748 2412 748 Size: 1664 3542 HpaI GTT'AAC Cuts at: 2796 2796 Size: 5206 KpnI G_GTAC'C Cuts at: 2531 2531 Size: 5206 MfeI C'AATT_G Cuts at: 2115 2805 2115 Size: 690 4516 MluI A'CGCG_T Cuts at: 5082 5082 Size: 5206 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2322 4320 4504 1305 Size: 1017 1998 184 2007 Fragments arranged by size: 2007 1998 1017 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3384 Fragments arranged by size: 3384 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2267 2432 3164 3523 3682 518 Size: 648 1101 165 732 359 159 2042 Fragments arranged by size: 2042 1101 732 648 359 165 159 MspA1I CmG'CkG Cuts at: 1606 2485 2622 3299 4447 4692 1606 Size: 879 137 677 1148 245 2120 Fragments arranged by size: 2120 1148 879 677 245 137 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4654 NdeI CA'TA_TG Cuts at: 387 387 Size: 5206 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5206 NotI GC'GGCC_GC Cuts at: 2653 2653 Size: 5206 NsiI A_TGCA'T Cuts at: 2010 2010 Size: 5206 NspI r_CATG'y Cuts at: 1132 1229 2476 2564 4109 1132 Size: 97 1247 88 1545 2229 Fragments arranged by size: 2229 1545 1247 97 88 PasI CC'CwG_GG Cuts at: 1348 2364 2498 1348 Size: 1016 134 4056 Fragments arranged by size: 4056 1016 134 PciI A'CATG_T Cuts at: 4105 4105 Size: 5206 PflMI CCAn_nnn'nTGG Cuts at: 1108 2010 2239 1108 Size: 902 229 4075 Fragments arranged by size: 4075 902 229 PfoI T'CCnGG_A Cuts at: 2316 2406 2316 Size: 90 5116 PmeI GTTT'AAAC Cuts at: 2510 2510 Size: 5206 PmlI CAC'GTG Cuts at: 2332 2332 Size: 5206 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3275 3307 4788 4820 3275 Size: 32 1481 32 3661 Fragments arranged by size: 3661 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 2117 1613 Size: 504 4702 PsiI TTA'TAA Cuts at: 2776 2776 Size: 5206 PstI C_TGCA'G Cuts at: 830 2457 2469 2558 830 Size: 1627 12 89 3478 Fragments arranged by size: 3478 1627 89 12 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5206 PvuII CAG'CTG Cuts at: 2485 2485 Size: 5206 SalI G'TCGA_C Cuts at: 1936 2548 1936 Size: 612 4594 SbfI CC_TGCA'GG Cuts at: 2558 2558 Size: 5206 ScaI AGT'ACT Cuts at: 3454 5166 3454 Size: 1712 3494 SfcI C'TryA_G Cuts at: 826 1045 2453 2465 2554 3689 4370 4561 826 Size: 219 1408 12 89 1135 681 191 1471 Fragments arranged by size: 1471 1408 1135 681 219 191 89 12 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5206 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5206 SmaI CCC'GGG Cuts at: 1872 2533 1872 Size: 661 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3310 4211 4473 820 Size: 197 926 1367 901 262 1553 Fragments arranged by size: 1553 1367 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 2997 493 Size: 2504 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5206 SphI G_CATG'C Cuts at: 1132 2564 1132 Size: 1432 3774 SspI AAT'ATT Cuts at: 5 52 3130 5 Size: 47 3078 2081 Fragments arranged by size: 3078 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5206 StyI C'CwwG_G Cuts at: 513 1065 2385 2645 513 Size: 552 1320 260 3074 Fragments arranged by size: 3074 1320 552 260 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2490 3233 3250 3403 3588 4033 325 Size: 1255 910 743 17 153 185 445 1498 Fragments arranged by size: 1498 1255 910 743 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3452 5164 96 Size: 274 80 33 51 1443 1475 1712 138 Fragments arranged by size: 1712 1475 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2462 2494 5166 5198 2462 Size: 32 2672 32 2470 Fragments arranged by size: 2672 2470 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5206 XbaI T'CTAG_A Cuts at: 2542 2542 Size: 5206 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2434 2434 Size: 5206 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5206 XmaI C'CCGG_G Cuts at: 1870 2531 1870 Size: 661 4545 XmnI GAAnn'nnTTC Cuts at: 3335 3335 Size: 5206 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3014 276 Size: 53 83 186 936 1480 2468 Fragments arranged by size: 2468 1480 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NsiI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BplI BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI PacI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI