hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /data/Pfam.bin
Sequence file: /tmp/20080306/iprscan-20080306-04384823/chunk_1/iprscan-20080306-04384823.nocrc
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Query sequence: pF1KB8818
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family) 140.3 8.4e-47 1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family) 142.2 1.3e-39 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PF00001.12.fs 1/1 71 327 .. 1 272 [] 140.3 8.4e-47
PF00001.12.ls 1/1 71 327 .. 1 272 [] 142.2 1.3e-39
Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 71 to 327: score 140.3, E = 8.4e-47
*->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
GN+++++v+l + r++ i++lN A+ADLL+ + lp+ ++y+ ++
pF1KB8818 71 GNIIALYVFLGIHRKRNSIQIYLLNVAIADLLLIFCLPFRIMYHINQ 117
gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
+ W++G +lCk+v+ l+++nmy Si lL +IS+DRY+ I + ++ r
pF1KB8818 118 N-KWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSIQQRKAI 166
tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
t + v+++vW lal l +++++ k +++ t+C+ + +
pF1KB8818 167 T-TKQSIYVCCIVWMLALGGFLTMIILTLKKGGHNS------TMCFHYRD 209
evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
+++ + + ++++++ ++++++ +l+i+ Y I + l + ++
pF1KB8818 210 KHNAKG----EAIFNFILVVMFWLI-FLLIILSYIKIGKNLLRISKRRSK 254
kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
+s k +a+ ++v+++F++C++Py+ + ++ +l+ ssC
pF1KB8818 255 FPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISSqLN---VSSCYW 301
ervlptallvtlwLayvNsclNPiIY<-*
++++++ + l+L+ +Nscl+P+ Y
pF1KB8818 302 KEIVHKTNEIMLVLSSFNSCLDPVMY 327
PF00001.12.ls: domain 1 of 1, from 71 to 327: score 142.2, E = 1.3e-39
*->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
GN+++++v+l + r++ i++lN A+ADLL+ + lp+ ++y+ ++
pF1KB8818 71 GNIIALYVFLGIHRKRNSIQIYLLNVAIADLLLIFCLPFRIMYHINQ 117
gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
+ W++G +lCk+v+ l+++nmy Si lL +IS+DRY+ I + ++ r
pF1KB8818 118 N-KWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSIQQRKAI 166
tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
t + v+++vW lal l +++++ k +++ t+C+ + +
pF1KB8818 167 T-TKQSIYVCCIVWMLALGGFLTMIILTLKKGGHNS------TMCFHYRD 209
evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
+++ + + ++++++ ++++++ +l+i+ Y I + l + ++
pF1KB8818 210 KHNAKG----EAIFNFILVVMFWLI-FLLIILSYIKIGKNLLRISKRRSK 254
kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel
+s k +a+ ++v+++F++C++Py+ + ++ +l+ ssC
pF1KB8818 255 FPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISSqLN---VSSCYW 301
ervlptallvtlwLayvNsclNPiIY<-*
++++++ + l+L+ +Nscl+P+ Y
pF1KB8818 302 KEIVHKTNEIMLVLSSFNSCLDPVMY 327
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