hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080306/iprscan-20080306-04210813/chunk_1/iprscan-20080306-04210813.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB8810 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00001.12.fs 7 transmembrane receptor (rhodopsin family) 296.0 2.3e-98 1 PF00001.12.ls 7 transmembrane receptor (rhodopsin family) 298.0 1.7e-86 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00001.12.fs 1/1 48 308 .. 1 272 [] 296.0 2.3e-98 PF00001.12.ls 1/1 48 308 .. 1 272 [] 298.0 1.7e-86 Alignments of top-scoring domains: PF00001.12.fs: domain 1 of 1, from 48 to 308: score 296.0, E = 2.3e-98 *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg GNlL+++vi++++k ++t ++ NL ++D+Lf+++lp ++yy++g pF1KB8810 48 GNLLALVVIVQNRKKINSTTLYSTNLVISDILFTTALPTRIAYYAMG 94 gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr +dW +G+alC+++ ++++n+ya++ ++t++SiDR++A+vhPlry+ + pF1KB8810 95 -FDWRIGDALCRITALVFYINTYAGVNFMTCLSIDRFIAVVHPLRYNKIK 143 tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp + +Ak+v+++vW+l ++ +lP l+ ++k+++e+ ++ +++f+ pF1KB8810 144 R-IEHAKGVCIFVWILVFAQTLPLLINPMSKQEAERI----TCMEYPNFE 188 evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas e + l ++ l ++++g+vlPl++il+cY++I ++l+++a++ + pF1KB8810 189 ETK------SLPWILLGACFIGYVLPLIIILICYSQICCKLFRTAKQNPL 232 kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel +++s +ka+ t+++++vvFvlC++Py+++++ +++++l + ++++C++ pF1KB8810 233 TEKSGVNKKALNTIILIIVVFVLCFTPYHVAIIQHMIKkLRFSNFLECSQ 282 ervlptallvtlwLayvNsclNPiIY<-* ++ ++ l++t++L +N+c++P+IY pF1KB8810 283 RHSFQISLHFTVCLMNFNCCMDPFIY 308 PF00001.12.ls: domain 1 of 1, from 48 to 308: score 298.0, E = 1.7e-86 *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg GNlL+++vi++++k ++t ++ NL ++D+Lf+++lp ++yy++g pF1KB8810 48 GNLLALVVIVQNRKKINSTTLYSTNLVISDILFTTALPTRIAYYAMG 94 gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr +dW +G+alC+++ ++++n+ya++ ++t++SiDR++A+vhPlry+ + pF1KB8810 95 -FDWRIGDALCRITALVFYINTYAGVNFMTCLSIDRFIAVVHPLRYNKIK 143 tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp + +Ak+v+++vW+l ++ +lP l+ ++k+++e+ ++ +++f+ pF1KB8810 144 R-IEHAKGVCIFVWILVFAQTLPLLINPMSKQEAERI----TCMEYPNFE 188 evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas e + l ++ l ++++g+vlPl++il+cY++I ++l+++a++ + pF1KB8810 189 ETK------SLPWILLGACFIGYVLPLIIILICYSQICCKLFRTAKQNPL 232 kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssCel +++s +ka+ t+++++vvFvlC++Py+++++ +++++l + ++++C++ pF1KB8810 233 TEKSGVNKKALNTIILIIVVFVLCFTPYHVAIIQHMIKkLRFSNFLECSQ 282 ervlptallvtlwLayvNsclNPiIY<-* ++ ++ l++t++L +N+c++P+IY pF1KB8810 283 RHSFQISLHFTVCLMNFNCCMDPFIY 308 //