Result of FASTA (omim) for
pFN21AB8807
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8807, 355 aa
1>>>pF1KB8807 355 - 355 aa - 355 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.4467+/-0.000491; mu= 21.1772+/- 0.031
mean_var=100.0194+/-24.720, 0's: 0 Z-trim(108.7): 624 B-trim: 949 in 1/48
Lambda= 0.128243
statistics sampled from 16069 (16804) to 16069 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.541), E-opt: 0.2 (0.197), width: 16
Scan time: 7.050
The best scores are: opt bits E(85289)
XP_006713023 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 2346 445.4 8.9e-125
NP_847899 (OMIM: 601268) C-C chemokine receptor ty ( 355) 2346 445.4 8.9e-125
XP_011531637 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 2346 445.4 8.9e-125
NP_001828 (OMIM: 601268) C-C chemokine receptor ty ( 355) 2346 445.4 8.9e-125
NP_001158152 (OMIM: 601268) C-C chemokine receptor ( 373) 2346 445.4 9.1e-125
NP_847898 (OMIM: 601268) C-C chemokine receptor ty ( 376) 2346 445.5 9.2e-125
XP_016861175 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 2346 445.5 9.6e-125
XP_016861174 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 2346 445.5 9.6e-125
NP_001286 (OMIM: 601159) C-C chemokine receptor ty ( 355) 1528 294.1 3.2e-79
NP_001116868 (OMIM: 601267) C-C chemokine receptor ( 360) 1235 239.9 6.7e-63
XP_011532371 (OMIM: 601267) PREDICTED: C-C chemoki ( 360) 1235 239.9 6.7e-63
NP_000570 (OMIM: 601373,609532,610379,612522) C-C ( 352) 1230 238.9 1.3e-62
NP_001093638 (OMIM: 601373,609532,610379,612522) C ( 352) 1230 238.9 1.3e-62
NP_001116513 (OMIM: 601267) C-C chemokine receptor ( 374) 1152 224.5 2.9e-58
XP_016861176 (OMIM: 604836) PREDICTED: C-C chemoki ( 360) 1069 209.2 1.2e-53
NP_005499 (OMIM: 604836) C-C chemokine receptor ty ( 360) 1069 209.2 1.2e-53
NP_005192 (OMIM: 601834) C-C chemokine receptor ty ( 355) 925 182.5 1.2e-45
NP_001164642 (OMIM: 601470,607339,609423,613784) C ( 355) 902 178.3 2.4e-44
NP_001328 (OMIM: 601470,607339,609423,613784) CX3C ( 355) 902 178.3 2.4e-44
NP_001164643 (OMIM: 601470,607339,609423,613784) C ( 355) 902 178.3 2.4e-44
NP_001164645 (OMIM: 601470,607339,609423,613784) C ( 387) 902 178.3 2.5e-44
NP_003956 (OMIM: 608379) C-C chemokine receptor-li ( 344) 853 169.2 1.2e-41
XP_011532511 (OMIM: 608379) PREDICTED: C-C chemoki ( 344) 853 169.2 1.2e-41
XP_011532510 (OMIM: 608379) PREDICTED: C-C chemoki ( 344) 853 169.2 1.2e-41
XP_016862925 (OMIM: 608379) PREDICTED: C-C chemoki ( 344) 853 169.2 1.2e-41
NP_001124382 (OMIM: 608379) C-C chemokine receptor ( 356) 853 169.2 1.3e-41
NP_001287 (OMIM: 602648) atypical chemokine recept ( 384) 782 156.1 1.2e-37
NP_001243298 (OMIM: 604738) C-C chemokine receptor ( 357) 748 149.8 8.9e-36
NP_006632 (OMIM: 604738) C-C chemokine receptor ty ( 357) 748 149.8 8.9e-36
NP_112477 (OMIM: 604738) C-C chemokine receptor ty ( 369) 748 149.8 9.1e-36
XP_011531614 (OMIM: 604738) PREDICTED: C-C chemoki ( 369) 748 149.8 9.1e-36
NP_004358 (OMIM: 601835) C-C chemokine receptor ty ( 374) 742 148.7 2e-35
NP_113597 (OMIM: 601835) C-C chemokine receptor ty ( 374) 742 148.7 2e-35
NP_001288645 (OMIM: 600242) C-C chemokine receptor ( 372) 711 142.9 1e-33
NP_001288647 (OMIM: 600242) C-C chemokine receptor ( 372) 711 142.9 1e-33
NP_001288646 (OMIM: 600242) C-C chemokine receptor ( 372) 711 142.9 1e-33
NP_001829 (OMIM: 600242) C-C chemokine receptor ty ( 378) 711 143.0 1.1e-33
NP_003458 (OMIM: 162643,193670) C-X-C chemokine re ( 352) 677 136.6 8e-32
NP_001008540 (OMIM: 162643,193670) C-X-C chemokine ( 356) 677 136.6 8e-32
NP_001548 (OMIM: 146928) C-X-C chemokine receptor ( 360) 677 136.6 8.1e-32
NP_001161770 (OMIM: 146928) C-X-C chemokine recept ( 360) 677 136.6 8.1e-32
XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 677 136.6 8.1e-32
XP_016859480 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 677 136.6 8.1e-32
XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 677 136.6 8.1e-32
XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 677 136.6 8.1e-32
NP_001288643 (OMIM: 600242) C-C chemokine receptor ( 315) 655 132.5 1.3e-30
NP_000625 (OMIM: 146929,609423) C-X-C chemokine re ( 350) 647 131.1 3.7e-30
NP_001495 (OMIM: 300574) C-X-C chemokine receptor ( 368) 643 130.4 6.4e-30
XP_005262313 (OMIM: 300574) PREDICTED: C-X-C chemo ( 378) 643 130.4 6.5e-30
NP_001136269 (OMIM: 300574) C-X-C chemokine recept ( 415) 643 130.4 6.8e-30
>>XP_006713023 (OMIM: 601268) PREDICTED: C-C chemokine r (355 aa)
initn: 2346 init1: 2346 opt: 2346 Z-score: 2361.2 bits: 445.4 E(85289): 8.9e-125
Smith-Waterman score: 2346; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355)
10 20 30 40 50 60
pF1KB8 MTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGNVVVVMILI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGNVVVVMILI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGFYHTGLYSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGFYHTGLYSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFYETEELFEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFYETEELFEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPSKKKYKAIRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPSKKKYKAIRL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAYSHCCMNPVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAYSHCCMNPVI
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 YAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPSTAEPELSIVF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPSTAEPELSIVF
310 320 330 340 350
>>NP_847899 (OMIM: 601268) C-C chemokine receptor type 3 (355 aa)
initn: 2346 init1: 2346 opt: 2346 Z-score: 2361.2 bits: 445.4 E(85289): 8.9e-125
Smith-Waterman score: 2346; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355)
10 20 30 40 50 60
pF1KB8 MTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGNVVVVMILI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_847 MTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGNVVVVMILI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGFYHTGLYSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_847 KYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGFYHTGLYSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFYETEELFEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_847 IFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFYETEELFEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPSKKKYKAIRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_847 TLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPSKKKYKAIRL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAYSHCCMNPVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_847 IFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAYSHCCMNPVI
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 YAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPSTAEPELSIVF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_847 YAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPSTAEPELSIVF
310 320 330 340 350
>>XP_011531637 (OMIM: 601268) PREDICTED: C-C chemokine r (355 aa)
initn: 2346 init1: 2346 opt: 2346 Z-score: 2361.2 bits: 445.4 E(85289): 8.9e-125
Smith-Waterman score: 2346; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355)
10 20 30 40 50 60
pF1KB8 MTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGNVVVVMILI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGNVVVVMILI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGFYHTGLYSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGFYHTGLYSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFYETEELFEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFYETEELFEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPSKKKYKAIRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPSKKKYKAIRL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAYSHCCMNPVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAYSHCCMNPVI
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 YAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPSTAEPELSIVF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPSTAEPELSIVF
310 320 330 340 350
>>NP_001828 (OMIM: 601268) C-C chemokine receptor type 3 (355 aa)
initn: 2346 init1: 2346 opt: 2346 Z-score: 2361.2 bits: 445.4 E(85289): 8.9e-125
Smith-Waterman score: 2346; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355)
10 20 30 40 50 60
pF1KB8 MTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGNVVVVMILI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGNVVVVMILI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGFYHTGLYSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGFYHTGLYSE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 IFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFYETEELFEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFYETEELFEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPSKKKYKAIRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPSKKKYKAIRL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAYSHCCMNPVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAYSHCCMNPVI
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 YAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPSTAEPELSIVF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPSTAEPELSIVF
310 320 330 340 350
>>NP_001158152 (OMIM: 601268) C-C chemokine receptor typ (373 aa)
initn: 2346 init1: 2346 opt: 2346 Z-score: 2360.9 bits: 445.4 E(85289): 9.1e-125
Smith-Waterman score: 2346; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:19-373)
10 20 30 40
pF1KB8 MTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPPLYS
::::::::::::::::::::::::::::::::::::::::::
NP_001 MPFGIRMLLRAHKPGRSEMTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPPLYS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 LVFTVGLLGNVVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LVFTVGLLGNVVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 HGMCKLLSGFYHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HGMCKLLSGFYHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 LAALPEFIFYETEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAALPEFIFYETEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGI
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 IKTLLRCPSKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IKTLLRCPSKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLV
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB8 MLVTEVIAYSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLVTEVIAYSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSV
310 320 330 340 350 360
350
pF1KB8 SPSTAEPELSIVF
:::::::::::::
NP_001 SPSTAEPELSIVF
370
>>NP_847898 (OMIM: 601268) C-C chemokine receptor type 3 (376 aa)
initn: 2346 init1: 2346 opt: 2346 Z-score: 2360.9 bits: 445.5 E(85289): 9.2e-125
Smith-Waterman score: 2346; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:22-376)
10 20 30
pF1KB8 MTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPP
:::::::::::::::::::::::::::::::::::::::
NP_847 MPFGIRMLLRAHKPGSSRRSEMTTSLDTVETFGTTSYYDDVGLLCEKADTRALMAQFVPP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB8 LYSLVFTVGLLGNVVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_847 LYSLVFTVGLLGNVVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNW
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 VFGHGMCKLLSGFYHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_847 VFGHGMCKLLSGFYHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB8 LAVLAALPEFIFYETEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_847 LAVLAALPEFIFYETEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICY
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 TGIIKTLLRCPSKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_847 TGIIKTLLRCPSKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHL
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB8 DLVMLVTEVIAYSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_847 DLVMLVTEVIAYSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERT
310 320 330 340 350 360
340 350
pF1KB8 SSVSPSTAEPELSIVF
::::::::::::::::
NP_847 SSVSPSTAEPELSIVF
370
>>XP_016861175 (OMIM: 601268) PREDICTED: C-C chemokine r (410 aa)
initn: 2346 init1: 2346 opt: 2346 Z-score: 2360.5 bits: 445.5 E(85289): 9.6e-125
Smith-Waterman score: 2346; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:56-410)
10 20 30
pF1KB8 MTTSLDTVETFGTTSYYDDVGLLCEKADTR
::::::::::::::::::::::::::::::
XP_016 FFTAAVDWIMPFGIRMLLRAHKPGSSRRSEMTTSLDTVETFGTTSYYDDVGLLCEKADTR
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB8 ALMAQFVPPLYSLVFTVGLLGNVVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALMAQFVPPLYSLVFTVGLLGNVVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFW
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB8 IHYVRGHNWVFGHGMCKLLSGFYHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IHYVRGHNWVFGHGMCKLLSGFYHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFG
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB8 VITSIVTWGLAVLAALPEFIFYETEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VITSIVTWGLAVLAALPEFIFYETEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVL
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB8 PLLVMAICYTGIIKTLLRCPSKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLLVMAICYTGIIKTLLRCPSKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFG
270 280 290 300 310 320
280 290 300 310 320 330
pF1KB8 NDCERSKHLDLVMLVTEVIAYSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDCERSKHLDLVMLVTEVIAYSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPF
330 340 350 360 370 380
340 350
pF1KB8 LPSEKLERTSSVSPSTAEPELSIVF
:::::::::::::::::::::::::
XP_016 LPSEKLERTSSVSPSTAEPELSIVF
390 400 410
>>XP_016861174 (OMIM: 601268) PREDICTED: C-C chemokine r (410 aa)
initn: 2346 init1: 2346 opt: 2346 Z-score: 2360.5 bits: 445.5 E(85289): 9.6e-125
Smith-Waterman score: 2346; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:56-410)
10 20 30
pF1KB8 MTTSLDTVETFGTTSYYDDVGLLCEKADTR
::::::::::::::::::::::::::::::
XP_016 FFTAAVDWIMPFGIRMLLRAHKPGSSRRSEMTTSLDTVETFGTTSYYDDVGLLCEKADTR
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB8 ALMAQFVPPLYSLVFTVGLLGNVVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ALMAQFVPPLYSLVFTVGLLGNVVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFW
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB8 IHYVRGHNWVFGHGMCKLLSGFYHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IHYVRGHNWVFGHGMCKLLSGFYHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFG
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB8 VITSIVTWGLAVLAALPEFIFYETEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VITSIVTWGLAVLAALPEFIFYETEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVL
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB8 PLLVMAICYTGIIKTLLRCPSKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLLVMAICYTGIIKTLLRCPSKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFG
270 280 290 300 310 320
280 290 300 310 320 330
pF1KB8 NDCERSKHLDLVMLVTEVIAYSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDCERSKHLDLVMLVTEVIAYSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPF
330 340 350 360 370 380
340 350
pF1KB8 LPSEKLERTSSVSPSTAEPELSIVF
:::::::::::::::::::::::::
XP_016 LPSEKLERTSSVSPSTAEPELSIVF
390 400 410
>>NP_001286 (OMIM: 601159) C-C chemokine receptor type 1 (355 aa)
initn: 1510 init1: 1510 opt: 1528 Z-score: 1543.2 bits: 294.1 E(85289): 3.2e-79
Smith-Waterman score: 1528; 63.2% identity (86.3% similar) in 351 aa overlap (6-355:5-355)
10 20 30 40 50
pF1KB8 MTTSLDTVETFGTTSYYD-DVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGNVVVVMIL
.:.: . ::. .: . :.:.. ::. ::..::::::::..::.::..::..:
NP_001 METPNTTEDYDTTTEFDYGDATPCQKVNERAFGAQLLPPLYSLVFVIGLVGNILVVLVL
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 IKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGFYHTGLYS
..:.::. ::.:::::::::::::: :::::: : .:::: .:::.:::::.:::::
NP_001 VQYKRLKNMTSIYLLNLAISDLLFLFTLPFWIDYKLKDDWVFGDAMCKILSGFYYTGLYS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 EIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFYETEELFE
::::::::::::::::::::::::::::::::::::. :.::.::..: . : .:. :
NP_001 EIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIIIWALAILASMPGLYFSKTQWEFT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 ETLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPSKKKYKAIR
. :: .:.... :. :..:....: :::::::: :::::::: ::: :..:: ::.:
NP_001 HHTCSLHFPHESLREWKLFQALKLNLFGLVLPLLVMIICYTGIIKILLRRPNEKKSKAVR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 LIFVIMAVFFIFWTPYNVAILLSSYQSILFGNDCERSKHLDLVMLVTEVIAYSHCCMNPV
:::::: .::.::::::..::.: .:..:: ..::.:.::::.. :::::::.:::.:::
NP_001 LIFVIMIIFFLFWTPYNLTILISVFQDFLFTHECEQSRHLDLAVQVTEVIAYTHCCVNPV
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 IYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPSTAEPELSIVF
::::::::::::::..:::.. .:: ...::: ..:::.::.::::.: ::: :
NP_001 IYAFVGERFRKYLRQLFHRRVAVHLVKWLPFLSVDRLERVSSTSPSTGEHELSAGF
300 310 320 330 340 350
>>NP_001116868 (OMIM: 601267) C-C chemokine receptor typ (360 aa)
initn: 1228 init1: 374 opt: 1235 Z-score: 1250.2 bits: 239.9 E(85289): 6.7e-63
Smith-Waterman score: 1235; 52.8% identity (82.2% similar) in 343 aa overlap (14-352:21-357)
10 20 30 40 50
pF1KB8 MTTSLDTVETFGTTSYYD-DVGLLCEKADTRALMAQFVPPLYSLVFTVGLLGN
:...: : : :.: :.. . ::..:::::::: :..::
NP_001 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAPCHKFDVKQIGAQLLPPLYSLVFIFGFVGN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 VVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKLLSGF
..::.:::. ..:. .:.::::::::::::::.:::.: : . ...::::..::::..:.
NP_001 MLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSA-ANEWVFGNAMCKLFTGL
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 YHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPEFIFY
:: : .. ::::::::::::::::::::::.::::::::.::..:: .::.:..: .::
NP_001 YHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPGIIFT
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 ETEELFEETLCSALYPEDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTLLRCPS-
. .. .:. .:. .: .:::. .:. ::::::.:.:::.::.:::::: .
NP_001 KCQKEDSVYVCGPYFPR----GWNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRCRNE
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 KKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSILFG-NDCERSKHLDLVMLVTEVIA
::...:.:.::.:: :.:.::::::..:::...: .:: ..:: ...:: . :::...
NP_001 KKRHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQE-FFGLSNCESTSQLDQATQVTETLG
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 YSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLER-TSSVSPSTAEP
..:::.::.:::::::.::.:: ::..:. .. . : . : .. ::. .:::.:
NP_001 MTHCCINPIIYAFVGEKFRRYLSVFFRKHITKRFCKQCPVFYRETVDGVTSTNTPSTGEQ
300 310 320 330 340 350
350
pF1KB8 ELSIVF
:.:
NP_001 EVSAGL
360
355 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:44:56 2016 done: Fri Nov 4 15:44:57 2016
Total Scan time: 7.050 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]