FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8763, 211 aa
  1>>>pF1KB8763 211 - 211 aa - 211 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9195+/-0.000706; mu= 9.2850+/- 0.043
 mean_var=150.2285+/-30.228, 0's: 0 Z-trim(115.5): 19  B-trim: 0 in 0/53
 Lambda= 0.104640
 statistics sampled from 16065 (16082) to 16065 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.494), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS10546.1 SOCS1 gene_id:8651|Hs108|chr16         ( 211) 1445 228.4 2.5e-60


>>CCDS10546.1 SOCS1 gene_id:8651|Hs108|chr16              (211 aa)
 initn: 1445 init1: 1445 opt: 1445  Z-score: 1196.6  bits: 228.4 E(32554): 2.5e-60
Smith-Waterman score: 1445; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB8 MVAHNQVAADNAVSTAAEPRRRPEPSSSSSSSPAAPARPRPCPAVPAPAPGDTHFRTFRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MVAHNQVAADNAVSTAAEPRRRPEPSSSSSSSPAAPARPRPCPAVPAPAPGDTHFRTFRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HADYRRITRASALLDACGFYWGPLSVHGAHERLRAEPVGTFLVRDSRQRNCFFALSVKMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HADYRRITRASALLDACGFYWGPLSVHGAHERLRAEPVGTFLVRDSRQRNCFFALSVKMA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SGPTSIRVHFQAGRFHLDGSRESFDCLFELLEHYVAAPRRMLGAPLRQRRVRPLQELCRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SGPTSIRVHFQAGRFHLDGSRESFDCLFELLEHYVAAPRRMLGAPLRQRRVRPLQELCRQ
              130       140       150       160       170       180

              190       200       210 
pF1KB8 RIVATVGRENLARIPLNPVLRDYLSSFPFQI
       :::::::::::::::::::::::::::::::
CCDS10 RIVATVGRENLARIPLNPVLRDYLSSFPFQI
              190       200       210 




211 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 15:22:46 2016 done: Fri Nov  4 15:22:47 2016
 Total Scan time:  2.100 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]