(Circular) (Six-base) MAPSORT of: pFN21AB8737.seq Check: 7302 from: 1 to: 5134 pFN21AB8737 5134 bp With 182 enzymes: SgfI * January 16, 2009 15:27 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2262 2262 Size: 5134 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2944 278 Size: 53 83 186 936 1408 2468 Fragments arranged by size: 2468 1408 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2477 1937 Size: 540 4594 Acc65I G'GTAC_C Cuts at: 2455 2455 Size: 5134 AclI AA'CG_TT Cuts at: 1563 3261 3634 1563 Size: 1698 373 3063 Fragments arranged by size: 3063 1698 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3197 4581 4849 1632 Size: 1565 1384 268 1917 Fragments arranged by size: 1917 1565 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4937 AflIII A'CryG_T Cuts at: 1203 4033 5010 1203 Size: 2830 977 1327 Fragments arranged by size: 2830 1327 977 AgeI A'CCGG_T Cuts at: 3965 3965 Size: 5134 AhdI GACnn_n'nnGTC Cuts at: 3863 3863 Size: 5134 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5134 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5134 AlwNI CAG_nnn'CTG Cuts at: 2877 4449 2877 Size: 1572 3562 ApaLI G'TGCA_C Cuts at: 3191 4347 3191 Size: 1156 3978 ApoI r'AATT_y Cuts at: 1493 2443 2669 2821 4930 1493 Size: 950 226 152 2109 1697 Fragments arranged by size: 2109 1697 950 226 152 AscI GG'CGCG_CC Cuts at: 2145 2145 Size: 5134 AseI AT'TA_AT Cuts at: 160 1032 3688 160 Size: 872 2656 1606 Fragments arranged by size: 2656 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5134 AvaI C'yCGr_G Cuts at: 1870 1943 2395 2459 1870 Size: 73 452 64 4545 Fragments arranged by size: 4545 452 73 64 BamHI G'GATC_C Cuts at: 2464 2831 2464 Size: 367 4767 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2138 2389 2455 3910 618 Size: 325 217 627 351 251 66 1455 1842 Fragments arranged by size: 1842 1455 627 351 325 251 217 66 BanII G_rGCy'C Cuts at: 1391 2286 2453 1391 Size: 895 167 4072 Fragments arranged by size: 4072 895 167 BbeI G_GCGC'C Cuts at: 2142 2393 2142 Size: 251 4883 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2237 2369 928 Size: 971 338 132 3693 Fragments arranged by size: 3693 971 338 132 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3325 3359 1903 Size: 34 1388 34 3678 Fragments arranged by size: 3678 1388 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3026 4236 3026 Size: 1210 3924 BclI T'GATC_A Cuts at: 1548 1548 Size: 5134 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2417 3745 136 Size: 107 122 71 631 605 745 1328 1525 Fragments arranged by size: 1525 1328 745 631 605 122 107 71 BglII A'GATC_T Cuts at: 5129 5129 Size: 5134 BlpI GC'TnA_GC Cuts at: 2551 2551 Size: 5134 Bme1580I G_kGCm'C Cuts at: 1790 3195 4351 1790 Size: 1405 1156 2573 Fragments arranged by size: 2573 1405 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5134 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2078 2865 3823 Size: 416 53 83 399 24 661 787 958 Cuts at: 3823 442 Size: 1753 Fragments arranged by size: 1753 958 787 661 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5134 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2060 2192 2216 3794 1239 Size: 821 132 24 1578 2579 Fragments arranged by size: 2579 1578 821 132 24 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3259 4124 4422 3259 Size: 865 298 3971 Fragments arranged by size: 3971 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3797 882 Size: 617 2298 2219 Fragments arranged by size: 2298 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2925 493 Size: 711 1721 2702 Fragments arranged by size: 2702 1721 711 BsaBI GATnn'nnATC Cuts at: 5128 5128 Size: 5134 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2139 2325 2390 2941 Size: 53 83 186 936 606 186 65 551 Cuts at: 2941 3323 3958 275 Size: 382 635 1451 Fragments arranged by size: 1451 936 635 606 551 382 186 186 83 65 53 BsaWI w'CCGG_w Cuts at: 3567 3965 4239 4386 4797 3567 Size: 398 274 147 411 3904 Fragments arranged by size: 3904 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4909 Fragments arranged by size: 4909 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2294 1186 Size: 1108 4026 BseYI C'CCAG_C Cuts at: 2296 4337 4833 2296 Size: 2041 496 2597 Fragments arranged by size: 2597 2041 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4561 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2313 2584 3345 4373 1540 Size: 275 186 312 271 761 1028 2301 Fragments arranged by size: 2301 1028 761 312 275 271 186 BsiHKAI G_wGCw'C Cuts at: 2286 3195 3280 4351 2286 Size: 909 85 1071 3069 Fragments arranged by size: 3069 1071 909 85 BsmI GAATG_Cn' Cuts at: 2645 2738 2645 Size: 93 5041 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2286 2453 3195 3280 4351 1391 Size: 399 496 167 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 496 399 167 85 BspEI T'CCGG_A Cuts at: 4797 4797 Size: 5134 BspHI T'CATG_A Cuts at: 3023 4753 3023 Size: 1730 3404 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2262 2489 844 Size: 1418 227 3489 Fragments arranged by size: 3489 1418 227 BsrBI CCG'CTC Cuts at: 1394 1823 3021 1394 Size: 429 1198 3507 Fragments arranged by size: 3507 1198 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2215 3629 3803 65 Size: 1183 967 1414 174 1396 Fragments arranged by size: 1414 1396 1183 967 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2069 2100 2141 3778 3965 1700 Size: 110 259 31 41 1637 187 2869 Fragments arranged by size: 2869 1637 259 187 110 41 31 BsrGI T'GTAC_A Cuts at: 96 2095 96 Size: 1999 3135 BssHII G'CGCG_C Cuts at: 1925 2065 2145 1925 Size: 140 80 4914 Fragments arranged by size: 4914 140 80 BssSI C'ACGA_G Cuts at: 3194 4206 3194 Size: 1012 4122 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5134 BstBI TT'CG_AA Cuts at: 3938 3938 Size: 5134 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5134 BstYI r'GATC_y Cuts at: 1972 2190 2464 2831 3216 3233 4685 4771 4783 Size: 218 274 367 385 17 1452 86 12 Cuts at: 4783 5129 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 385 367 346 274 218 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2014 2376 513 Size: 552 949 362 3271 Fragments arranged by size: 3271 949 552 362 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4395 Fragments arranged by size: 4395 683 56 BtsI GCAGTG_nn' Cuts at: 2172 2650 3444 3464 2172 Size: 478 794 20 3842 Fragments arranged by size: 3842 794 478 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5134 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5099 DraI TTT'AAA Cuts at: 2438 2438 Size: 5134 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4141 809 Size: 507 2825 1802 Fragments arranged by size: 2825 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2262 2581 3470 Size: 54 1425 50 275 18 432 319 889 Cuts at: 3470 5099 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 432 319 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2581 1537 Size: 275 769 4090 Fragments arranged by size: 4090 769 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3064 1353 Size: 1711 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3721 4095 4241 387 Size: 1064 138 2132 374 146 1280 Fragments arranged by size: 2132 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2284 2284 Size: 5134 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2060 2192 2216 3197 3794 4581 4849 Size: 393 428 132 24 981 597 787 268 Cuts at: 4849 1239 Size: 1524 Fragments arranged by size: 1524 981 787 597 428 393 268 132 24 EcoRI G'AATT_C Cuts at: 2443 2821 2443 Size: 378 4756 FspI TGC'GCA Cuts at: 3640 3640 Size: 5134 HaeII r_GCGC'y Cuts at: 1678 2142 2373 2393 4281 1678 Size: 464 231 20 1888 2531 Fragments arranged by size: 2531 1888 464 231 20 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3775 3807 3849 3881 1373 Size: 32 135 32 2203 32 42 32 2626 Fragments arranged by size: 2626 2203 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2478 2724 669 Size: 988 281 540 246 3079 Fragments arranged by size: 3079 988 540 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5134 HpaI GTT'AAC Cuts at: 2724 2724 Size: 5134 KasI G'GCGC_C Cuts at: 2138 2389 2138 Size: 251 4883 KpnI G_GTAC'C Cuts at: 2459 2459 Size: 5134 MfeI C'AATT_G Cuts at: 2733 2733 Size: 5134 MluI A'CGCG_T Cuts at: 5010 5010 Size: 5134 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4248 4432 1305 Size: 2943 184 2007 Fragments arranged by size: 2943 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2264 10 Size: 54 1425 343 432 2880 Fragments arranged by size: 2880 1425 432 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3092 3451 3610 518 Size: 648 1926 359 159 2042 Fragments arranged by size: 2042 1926 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2016 2186 2260 2550 3227 4375 4620 1606 Size: 410 170 74 290 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 410 290 245 170 74 NaeI GCC'GGC Cuts at: 2071 2143 2071 Size: 72 5062 NarI GG'CG_CC Cuts at: 2139 2390 2139 Size: 251 4883 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4582 NdeI CA'TA_TG Cuts at: 387 387 Size: 5134 NgoMIV G'CCGG_C Cuts at: 2069 2141 2069 Size: 72 5062 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5134 NotI GC'GGCC_GC Cuts at: 2581 2581 Size: 5134 NspI r_CATG'y Cuts at: 1132 1229 2492 4037 1132 Size: 97 1263 1545 2229 Fragments arranged by size: 2229 1545 1263 97 PasI CC'CwG_GG Cuts at: 1348 2317 1348 Size: 969 4165 PciI A'CATG_T Cuts at: 4033 4033 Size: 5134 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5134 PfoI T'CCnGG_A Cuts at: 2193 2193 Size: 5134 PmeI GTTT'AAAC Cuts at: 2438 2438 Size: 5134 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3203 3235 4716 4748 3203 Size: 32 1481 32 3589 Fragments arranged by size: 3589 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5134 PsiI TTA'TAA Cuts at: 2704 2704 Size: 5134 PstI C_TGCA'G Cuts at: 830 2259 2486 830 Size: 1429 227 3478 Fragments arranged by size: 3478 1429 227 PvuI CG_AT'CG Cuts at: 2001 2313 2001 Size: 312 4822 PvuII CAG'CTG Cuts at: 2260 2260 Size: 5134 SacI G_AGCT'C Cuts at: 2286 2286 Size: 5134 SacII CC_GC'GG Cuts at: 2017 2017 Size: 5134 SalI G'TCGA_C Cuts at: 1936 2476 1936 Size: 540 4594 SbfI CC_TGCA'GG Cuts at: 2486 2486 Size: 5134 ScaI AGT'ACT Cuts at: 3382 5094 3382 Size: 1712 3422 SfcI C'TryA_G Cuts at: 826 1045 2255 2482 3617 4298 4489 826 Size: 219 1210 227 1135 681 191 1471 Fragments arranged by size: 1471 1210 1135 681 227 219 191 SfiI GGCCn_nnn'nGGCC Cuts at: 2417 2417 Size: 5134 SfoI GGC'GCC Cuts at: 2140 2391 2140 Size: 251 4883 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5134 SgrAI Cr'CCGG_yG Cuts at: 1700 2141 1700 Size: 441 4693 SmaI CCC'GGG Cuts at: 1872 2461 1872 Size: 589 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3238 4139 4401 820 Size: 197 926 1295 901 262 1553 Fragments arranged by size: 1553 1295 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 2925 493 Size: 2432 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5134 SphI G_CATG'C Cuts at: 1132 2492 1132 Size: 1360 3774 SspI AAT'ATT Cuts at: 5 52 3058 5 Size: 47 3006 2081 Fragments arranged by size: 3006 2081 47 StuI AGG'CCT Cuts at: 1517 2420 1517 Size: 903 4231 StyI C'CwwG_G Cuts at: 513 1065 2043 2573 513 Size: 552 978 530 3074 Fragments arranged by size: 3074 978 552 530 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2429 3161 3178 3331 3516 3961 325 Size: 1255 849 732 17 153 185 445 1498 Fragments arranged by size: 1498 1255 849 732 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2095 3380 5092 Size: 274 80 33 51 1443 118 1285 1712 Cuts at: 5092 96 Size: 138 Fragments arranged by size: 1712 1443 1285 274 138 118 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5094 5126 5094 Size: 32 5102 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5134 XbaI T'CTAG_A Cuts at: 2470 2470 Size: 5134 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2374 2374 Size: 5134 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5134 XmaI C'CCGG_G Cuts at: 1870 2459 1870 Size: 589 4545 XmnI GAAnn'nnTTC Cuts at: 3263 3263 Size: 5134 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2942 276 Size: 53 83 186 936 1408 2468 Fragments arranged by size: 2468 1408 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AscI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PstI PvuI PvuII SacI SacII SalI SbfI ScaI SfcI SfiI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI ApaI AvrII BaeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoNI EcoO109I EcoRV FalI FseI FspAI NruI NsiI PacI PmlI PpuMI PspOMI PspXI PsrI RsrII SanDI SapI SexAI SrfI SwaI