Result of FASTA (omim) for
pFN21AB8672
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8672, 571 aa
1>>>pF1KB8672 571 - 571 aa - 571 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2656+/-0.000473; mu= 18.8205+/- 0.029
mean_var=62.1643+/-12.519, 0's: 0 Z-trim(108.6): 64 B-trim: 11 in 1/54
Lambda= 0.162669
statistics sampled from 16658 (16693) to 16658 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.537), E-opt: 0.2 (0.196), width: 16
Scan time: 8.280
The best scores are: opt bits E(85289)
NP_055400 (OMIM: 604653,606069) solute carrier fam ( 571) 3724 883.2 0
XP_016859427 (OMIM: 604653,606069) PREDICTED: solu ( 531) 3440 816.5 0
XP_005246562 (OMIM: 604653,606069) PREDICTED: solu ( 531) 3440 816.5 0
>>NP_055400 (OMIM: 604653,606069) solute carrier family (571 aa)
initn: 3724 init1: 3724 opt: 3724 Z-score: 4719.7 bits: 883.2 E(85289): 0
Smith-Waterman score: 3724; 100.0% identity (100.0% similar) in 571 aa overlap (1-571:1-571)
10 20 30 40 50 60
pF1KB8 MTRAGDHNRQRGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MTRAGDHNRQRGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TAVYGLVVAGSVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LTMYHGWVLTSCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LTMYHGWVLTSCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 DQLTNILAPMAVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 EEETELKQLNLHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EEETELKQLNLHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 SYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SYYNQPVFLAGMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TWLRRKCGLVRTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 TKIPEITTEIYMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TKIPEITTEIYMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 QENVIESERGIINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QENVIESERGIINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFR
490 500 510 520 530 540
550 560 570
pF1KB8 FAQNTLGNKLFACGPDAKEVRKENQANTSVV
:::::::::::::::::::::::::::::::
NP_055 FAQNTLGNKLFACGPDAKEVRKENQANTSVV
550 560 570
>>XP_016859427 (OMIM: 604653,606069) PREDICTED: solute c (531 aa)
initn: 3440 init1: 3440 opt: 3440 Z-score: 4360.0 bits: 816.5 E(85289): 0
Smith-Waterman score: 3440; 100.0% identity (100.0% similar) in 531 aa overlap (41-571:1-531)
20 30 40 50 60 70
pF1KB8 RGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAG
::::::::::::::::::::::::::::::
XP_016 MWHFAVSVFLVELYGNSLLLTAVYGLVVAG
10 20 30
80 90 100 110 120 130
pF1KB8 SVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 SCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRIDQLTNILAPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRIDQLTNILAPM
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 AVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLN
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 LHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLA
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB8 GMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLV
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB8 RTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITPTKIPEITTEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITPTKIPEITTEI
340 350 360 370 380 390
440 450 460 470 480 490
pF1KB8 YMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERG
400 410 420 430 440 450
500 510 520 530 540 550
pF1KB8 IINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFRFAQNTLGNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFRFAQNTLGNKL
460 470 480 490 500 510
560 570
pF1KB8 FACGPDAKEVRKENQANTSVV
:::::::::::::::::::::
XP_016 FACGPDAKEVRKENQANTSVV
520 530
>>XP_005246562 (OMIM: 604653,606069) PREDICTED: solute c (531 aa)
initn: 3440 init1: 3440 opt: 3440 Z-score: 4360.0 bits: 816.5 E(85289): 0
Smith-Waterman score: 3440; 100.0% identity (100.0% similar) in 531 aa overlap (41-571:1-531)
20 30 40 50 60 70
pF1KB8 RGCCGSLADYLTSAKFLLYLGHSLSTWGDRMWHFAVSVFLVELYGNSLLLTAVYGLVVAG
::::::::::::::::::::::::::::::
XP_005 MWHFAVSVFLVELYGNSLLLTAVYGLVVAG
10 20 30
80 90 100 110 120 130
pF1KB8 SVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SVLVLGAIIGDWVDKNARLKVAQTSLVVQNVSVILCGIILMMVFLHKHELLTMYHGWVLT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB8 SCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRIDQLTNILAPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SCYILIITIANIANLASTATAITIQRDWIVVVAGEDRSKLANMNATIRRIDQLTNILAPM
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 AVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AVGQIMTFGSPVIGCGFISGWNLVSMCVEYVLLWKVYQKTPALAVKAGLKEEETELKQLN
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB8 LHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHKDTEPKPLEGTHLMGVKDSNIHELEHEQEPTCASQMAEPFRTFRDGWVSYYNQPVFLA
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB8 GMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GMGLAFLYMTVLGFDCITTGYAYTQGLSGSILSILMGASAITGIMGTVAFTWLRRKCGLV
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB8 RTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITPTKIPEITTEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RTGLISGLAQLSCLILCVISVFMPGSPLDLSVSPFEDIRSRFIQGESITPTKIPEITTEI
340 350 360 370 380 390
440 450 460 470 480 490
pF1KB8 YMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YMSNGSNSANIVPETSPESVPIISVSLLFAGVIAARIGLWSFDLTVTQLLQENVIESERG
400 410 420 430 440 450
500 510 520 530 540 550
pF1KB8 IINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFRFAQNTLGNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IINGVQNSMNYLLDLLHFIMVILAPNPEAFGLLVLISVSFVAMGHIMYFRFAQNTLGNKL
460 470 480 490 500 510
560 570
pF1KB8 FACGPDAKEVRKENQANTSVV
:::::::::::::::::::::
XP_005 FACGPDAKEVRKENQANTSVV
520 530
571 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:26:10 2016 done: Fri Nov 4 14:26:11 2016
Total Scan time: 8.280 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]