Result of FASTA (omim) for
pFN21AB8265
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8265, 451 aa
1>>>pF1KB8265 451 - 451 aa - 451 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7037+/-0.000381; mu= 20.8504+/- 0.024
mean_var=61.4639+/-12.191, 0's: 0 Z-trim(111.5): 67 B-trim: 9 in 1/49
Lambda= 0.163593
statistics sampled from 20097 (20166) to 20097 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.62), E-opt: 0.2 (0.236), width: 16
Scan time: 6.060
The best scores are: opt bits E(85289)
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 3044 727.3 2e-209
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 3036 725.4 7.5e-209
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 3036 725.4 7.5e-209
NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain ( 450) 2975 711.0 1.6e-204
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 2941 703.0 4.2e-202
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 2839 678.9 7.3e-195
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 2774 663.5 2.9e-190
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 2774 663.5 3.1e-190
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 2414 578.5 1e-164
XP_016860313 (OMIM: 191110,616208) PREDICTED: tubu ( 295) 1933 464.9 1.3e-130
NP_006078 (OMIM: 602662) tubulin beta-4A chain iso ( 444) 1290 313.3 8.3e-85
NP_001276058 (OMIM: 602662) tubulin beta-4A chain ( 444) 1290 313.3 8.3e-85
NP_001276056 (OMIM: 602662) tubulin beta-4A chain ( 489) 1290 313.3 9e-85
NP_001276052 (OMIM: 602662) tubulin beta-4A chain ( 495) 1290 313.3 9.1e-85
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 1288 312.8 1.2e-84
NP_006079 (OMIM: 602660) tubulin beta-4B chain [Ho ( 445) 1288 312.8 1.2e-84
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 1277 310.2 7e-84
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 1275 309.8 9.7e-84
NP_115914 (OMIM: 615103) tubulin beta-6 chain isof ( 446) 1274 309.5 1.1e-83
NP_001290453 (OMIM: 615103) tubulin beta-6 chain i ( 446) 1274 309.5 1.1e-83
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 1273 309.3 1.4e-83
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 1245 302.7 1.3e-81
NP_001280141 (OMIM: 156610,191130,615771) tubulin ( 464) 1226 298.2 3e-80
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 1198 291.6 2.9e-78
NP_001280143 (OMIM: 156610,191130,615771) tubulin ( 400) 1157 281.9 2.2e-75
XP_016883574 (OMIM: 612901,613112) PREDICTED: tubu ( 429) 1115 272.0 2.2e-72
NP_001276060 (OMIM: 602662) tubulin beta-4A chain ( 372) 1087 265.3 1.9e-70
NP_001276059 (OMIM: 602662) tubulin beta-4A chain ( 372) 1087 265.3 1.9e-70
NP_001280145 (OMIM: 156610,191130,615771) tubulin ( 372) 1077 263.0 9.9e-70
NP_001280144 (OMIM: 156610,191130,615771) tubulin ( 372) 1077 263.0 9.9e-70
NP_001184110 (OMIM: 600638,602661,614039) tubulin ( 378) 1074 262.3 1.6e-69
NP_001290456 (OMIM: 615103) tubulin beta-6 chain i ( 374) 1073 262.0 1.9e-69
XP_011517761 (OMIM: 616768,616780) PREDICTED: tubu ( 372) 1059 258.7 1.9e-68
NP_001290457 (OMIM: 615103) tubulin beta-6 chain i ( 381) 1011 247.4 4.9e-65
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360) 1010 247.1 5.6e-65
NP_001290455 (OMIM: 615103) tubulin beta-6 chain i ( 409) 998 244.4 4.4e-64
XP_016871682 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 919 225.6 1.5e-58
XP_016871681 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 919 225.6 1.5e-58
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451) 820 202.4 2.1e-51
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451) 813 200.7 6.5e-51
NP_001290458 (OMIM: 615103) tubulin beta-6 chain i ( 300) 788 194.7 2.9e-49
NP_001290459 (OMIM: 615103) tubulin beta-6 chain i ( 300) 788 194.7 2.9e-49
XP_011517762 (OMIM: 616768,616780) PREDICTED: tubu ( 291) 739 183.1 8.5e-46
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain ( 460) 545 137.5 7.3e-32
NP_057346 (OMIM: 607345) tubulin epsilon chain [Ho ( 475) 444 113.6 1.1e-24
XP_016879942 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 438 112.1 2.1e-24
XP_011522916 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 438 112.1 2.1e-24
XP_016879944 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 412 105.9 1.4e-22
XP_016879946 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 412 105.9 1.4e-22
XP_016879945 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 412 105.9 1.4e-22
>>NP_006073 (OMIM: 602530) tubulin alpha-1B chain [Homo (451 aa)
initn: 3044 init1: 3044 opt: 3044 Z-score: 3880.7 bits: 727.3 E(85289): 2e-209
Smith-Waterman score: 3044; 100.0% identity (100.0% similar) in 451 aa overlap (1-451:1-451)
10 20 30 40 50 60
pF1KB8 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440 450
pF1KB8 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
:::::::::::::::::::::::::::::::
NP_006 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
430 440 450
>>NP_001257328 (OMIM: 602529,611603) tubulin alpha-1A ch (451 aa)
initn: 3036 init1: 3036 opt: 3036 Z-score: 3870.5 bits: 725.4 E(85289): 7.5e-209
Smith-Waterman score: 3036; 99.6% identity (100.0% similar) in 451 aa overlap (1-451:1-451)
10 20 30 40 50 60
pF1KB8 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_001 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_001 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440 450
pF1KB8 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
:::::::::::::::::::::::::::::::
NP_001 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
430 440 450
>>NP_006000 (OMIM: 602529,611603) tubulin alpha-1A chain (451 aa)
initn: 3036 init1: 3036 opt: 3036 Z-score: 3870.5 bits: 725.4 E(85289): 7.5e-209
Smith-Waterman score: 3036; 99.6% identity (100.0% similar) in 451 aa overlap (1-451:1-451)
10 20 30 40 50 60
pF1KB8 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_006 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_006 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440 450
pF1KB8 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
:::::::::::::::::::::::::::::::
NP_006 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
430 440 450
>>NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain [Hom (450 aa)
initn: 2959 init1: 2959 opt: 2975 Z-score: 3792.7 bits: 711.0 E(85289): 1.6e-204
Smith-Waterman score: 2975; 97.1% identity (99.6% similar) in 451 aa overlap (1-451:1-450)
10 20 30 40 50 60
pF1KB8 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
::::::::::::::.:::::::::::::::::::::::::::::::::::::::.:::::
NP_005 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
::::::: ::::::::.::::::::::::.:::::::::::::::::::.::::::::::
NP_005 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_005 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
::::::::::::::::.::::::::::::::::::::::.::::::::::::::::::::
NP_005 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440 450
pF1KB8 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
::::.::::::::::::::::.:.:: ::::
NP_005 AREDLAALEKDYEEVGVDSVEAEAEE-GEEY
430 440 450
>>NP_005991 (OMIM: 191110,616208) tubulin alpha-4A chain (448 aa)
initn: 2935 init1: 2935 opt: 2941 Z-score: 3749.3 bits: 703.0 E(85289): 4.2e-202
Smith-Waterman score: 2941; 96.4% identity (98.4% similar) in 450 aa overlap (1-450:1-448)
10 20 30 40 50 60
pF1KB8 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
::::::.::::::::.:::::::::::::::::::::::::::::::::.::: ::::::
NP_005 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
:::::::::::::::::.:.: :::::::::::::::::::::::::::::::::: :::
NP_005 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_005 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440 450
pF1KB8 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
::::::::::::::::.:: : :.::::
NP_005 AREDMAALEKDYEEVGIDSYED--EDEGEE
430 440
>>NP_001265481 (OMIM: 191110,616208) tubulin alpha-4A ch (433 aa)
initn: 2831 init1: 2831 opt: 2839 Z-score: 3619.4 bits: 678.9 E(85289): 7.3e-195
Smith-Waterman score: 2839; 96.6% identity (98.4% similar) in 435 aa overlap (16-450:1-433)
10 20 30 40 50 60
pF1KB8 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
.:::::::::::::::::::::::::::::::::.::: ::::::
NP_001 MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
10 20 30 40
70 80 90 100 110 120
pF1KB8 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
:::::::::::::::::.:.: :::::::::::::::::::::::::::::::::: :::
NP_001 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
:::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::
NP_001 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
350 360 370 380 390 400
430 440 450
pF1KB8 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
::::::::::::::::.:: : : .::::
NP_001 AREDMAALEKDYEEVGIDSYEDE--DEGEE
410 420 430
>>NP_001257329 (OMIM: 602529,611603) tubulin alpha-1A ch (416 aa)
initn: 2774 init1: 2774 opt: 2774 Z-score: 3536.8 bits: 663.5 E(85289): 2.9e-190
Smith-Waterman score: 2774; 99.5% identity (100.0% similar) in 416 aa overlap (36-451:1-416)
10 20 30 40 50 60
pF1KB8 SIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRA
::::::::::::::::::::::::::::::
NP_001 MPSDKTIGGGDDSFNTFFSETGAGKHVPRA
10 20 30
70 80 90 100 110 120
pF1KB8 VFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 ADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPY
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 NSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFD
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
NP_001 NSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFD
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB8 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPG
::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
NP_001 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB8 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM
340 350 360 370 380 390
430 440 450
pF1KB8 AALEKDYEEVGVDSVEGEGEEEGEEY
::::::::::::::::::::::::::
NP_001 AALEKDYEEVGVDSVEGEGEEEGEEY
400 410
>>NP_061816 (OMIM: 605742,613180) tubulin alpha-8 chain (449 aa)
initn: 2767 init1: 2767 opt: 2774 Z-score: 3536.3 bits: 663.5 E(85289): 3.1e-190
Smith-Waterman score: 2774; 89.8% identity (96.7% similar) in 451 aa overlap (1-451:1-449)
10 20 30 40 50 60
pF1KB8 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
::::::.::::::::::::::::.::::::: :: . .. . . ::::.::::::: ::
NP_061 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
::::::..::::::.::::.:::::::::::::::::::::::::::::.::: ::::::
NP_061 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
:::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
NP_061 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
:::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_061 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
::::::::::::::::.::::::::::::.:::.:::::.::::::::::::::::::::
NP_061 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
370 380 390 400 410 420
430 440 450
pF1KB8 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
::::.:::::::::::.:: : :.: :::.
NP_061 AREDLAALEKDYEEVGTDSFEEENE--GEEF
430 440
>>NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 cha (383 aa)
initn: 2403 init1: 2403 opt: 2414 Z-score: 3078.1 bits: 578.5 E(85289): 1e-164
Smith-Waterman score: 2414; 92.4% identity (98.2% similar) in 384 aa overlap (68-451:2-383)
40 50 60 70 80 90
pF1KB8 SDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKE
.::::::.::::.:::::::::::::::::
NP_001 MIDLEPTVVDEVRAGTYRQLFHPEQLITGKE
10 20 30
100 110 120 130 140 150
pF1KB8 DAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERL
::::::::::::.::: :::::::::::.: :.::::::.::::::::::::::::::::
NP_001 DAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERL
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 SVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL
:.::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB8 DIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVIS
::::::::::::::::::::::::::::::::::::::::::::::::::::.::::.::
NP_001 DIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIIS
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB8 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKT
:::::::::::::::..:::: .::::::::::::::::.::::::::::::.:::.:::
NP_001 AEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKT
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB8 KRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB8 MYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY
:::::::::::::::::::::::::::.:::::::::::.:: : :.: :::.
NP_001 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSFEEENE--GEEF
340 350 360 370 380
>>XP_016860313 (OMIM: 191110,616208) PREDICTED: tubulin (295 aa)
initn: 1927 init1: 1927 opt: 1933 Z-score: 2466.1 bits: 464.9 E(85289): 1.3e-130
Smith-Waterman score: 1933; 97.6% identity (98.7% similar) in 297 aa overlap (154-450:1-295)
130 140 150 160 170 180
pF1KB8 KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE
::::::::::::::::::::::::::::::
XP_016 MERLSVDYGKKSKLEFSIYPAPQVSTAVVE
10 20 30
190 200 210 220 230 240
pF1KB8 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB8 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV
100 110 120 130 140 150
310 320 330 340 350 360
pF1KB8 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVV
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
XP_016 KCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVV
160 170 180 190 200 210
370 380 390 400 410 420
pF1KB8 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE
220 230 240 250 260 270
430 440 450
pF1KB8 DMAALEKDYEEVGVDSVEGEGEEEGEEY
:::::::::::::.:: : : .::::
XP_016 DMAALEKDYEEVGIDSYEDE--DEGEE
280 290
451 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 11:10:47 2016 done: Fri Nov 4 11:10:48 2016
Total Scan time: 6.060 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]