Result of FASTA (omim) for pFN21AB8233
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8233, 149 aa
  1>>>pF1KB8233 149 - 149 aa - 149 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8716+/-0.000345; mu= -2.6702+/- 0.022
 mean_var=224.8548+/-46.008, 0's: 0 Z-trim(121.8): 21  B-trim: 64 in 1/56
 Lambda= 0.085531
 statistics sampled from 38989 (39010) to 38989 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.457), width:  16
 Scan time:  5.580

The best scores are:                                      opt bits E(85289)
NP_005554 (OMIM: 151442) stathmin isoform a [Homo  ( 149)  928 125.8 2.6e-29
NP_981946 (OMIM: 151442) stathmin isoform a [Homo  ( 149)  928 125.8 2.6e-29
NP_981944 (OMIM: 151442) stathmin isoform a [Homo  ( 149)  928 125.8 2.6e-29
NP_001138926 (OMIM: 151442) stathmin isoform b [Ho ( 174)  778 107.3 1.1e-23
XP_005251199 (OMIM: 600621) PREDICTED: stathmin-2  ( 174)  610 86.6 1.9e-17
NP_008960 (OMIM: 600621) stathmin-2 isoform 2 [Hom ( 179)  610 86.6   2e-17
NP_001263239 (OMIM: 608362) stathmin-3 isoform 2 [ ( 169)  582 83.1 2.1e-16
NP_056978 (OMIM: 608362) stathmin-3 isoform 1 [Hom ( 180)  582 83.1 2.2e-16
NP_001186143 (OMIM: 600621) stathmin-2 isoform 1 [ ( 187)  560 80.4 1.5e-15


>>NP_005554 (OMIM: 151442) stathmin isoform a [Homo sapi  (149 aa)
 initn: 928 init1: 928 opt: 928  Z-score: 647.1  bits: 125.8 E(85289): 2.6e-29
Smith-Waterman score: 928; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)

               10        20        30        40        50        60
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
               70        80        90       100       110       120

              130       140         
pF1KB8 ERLREKDKHIEEVRKNKESKDPADETEAD
       :::::::::::::::::::::::::::::
NP_005 ERLREKDKHIEEVRKNKESKDPADETEAD
              130       140         

>>NP_981946 (OMIM: 151442) stathmin isoform a [Homo sapi  (149 aa)
 initn: 928 init1: 928 opt: 928  Z-score: 647.1  bits: 125.8 E(85289): 2.6e-29
Smith-Waterman score: 928; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)

               10        20        30        40        50        60
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_981 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_981 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
               70        80        90       100       110       120

              130       140         
pF1KB8 ERLREKDKHIEEVRKNKESKDPADETEAD
       :::::::::::::::::::::::::::::
NP_981 ERLREKDKHIEEVRKNKESKDPADETEAD
              130       140         

>>NP_981944 (OMIM: 151442) stathmin isoform a [Homo sapi  (149 aa)
 initn: 928 init1: 928 opt: 928  Z-score: 647.1  bits: 125.8 E(85289): 2.6e-29
Smith-Waterman score: 928; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)

               10        20        30        40        50        60
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_981 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_981 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
               70        80        90       100       110       120

              130       140         
pF1KB8 ERLREKDKHIEEVRKNKESKDPADETEAD
       :::::::::::::::::::::::::::::
NP_981 ERLREKDKHIEEVRKNKESKDPADETEAD
              130       140         

>>NP_001138926 (OMIM: 151442) stathmin isoform b [Homo s  (174 aa)
 initn: 778 init1: 778 opt: 778  Z-score: 546.2  bits: 107.3 E(85289): 1.1e-23
Smith-Waterman score: 778; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KB8 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPLSPPKKKDLSLEEIQKKLEAAEER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSKMAEEKLTHKMEANKENREAQMAAKL
               70        80        90       100       110       120

              130       140                                  
pF1KB8 ERLREKDKHIEEVRKNKESKDPADETEAD                         
       ::::::                                                
NP_001 ERLREKMYFWTHGPGAHPAQISAEQSCLHSVPALCPALGLQSALITWSDLSHHH
              130       140       150       160       170    

>>XP_005251199 (OMIM: 600621) PREDICTED: stathmin-2 isof  (174 aa)
 initn: 610 init1: 610 opt: 610  Z-score: 434.2  bits: 86.6 E(85289): 1.9e-17
Smith-Waterman score: 610; 74.6% identity (88.1% similar) in 134 aa overlap (5-138:34-167)

                                         10        20        30    
pF1KB8                           MASSDIQVKELEKRASGQAFELILSPRSKESVPE
                                     :..::...::::::::::::.: :  :   
XP_005 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
            10        20        30        40        50        60   

           40        50        60        70        80        90    
pF1KB8 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
         :. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
XP_005 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
            70        80        90       100       110       120   

          100       110       120       130       140         
pF1KB8 KMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
       :::::::  :::  ::::::..:: .:::.::..:  :::.:::           
XP_005 KMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG    
           130       140       150       160       170        

>>NP_008960 (OMIM: 600621) stathmin-2 isoform 2 [Homo sa  (179 aa)
 initn: 610 init1: 610 opt: 610  Z-score: 434.0  bits: 86.6 E(85289): 2e-17
Smith-Waterman score: 610; 74.6% identity (88.1% similar) in 134 aa overlap (5-138:39-172)

                                         10        20        30    
pF1KB8                           MASSDIQVKELEKRASGQAFELILSPRSKESVPE
                                     :..::...::::::::::::.: :  :   
NP_008 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
       10        20        30        40        50        60        

           40        50        60        70        80        90    
pF1KB8 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
         :. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
NP_008 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
       70        80        90       100       110       120        

          100       110       120       130       140         
pF1KB8 KMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
       :::::::  :::  ::::::..:: .:::.::..:  :::.:::           
NP_008 KMAEEKLILKMEQIKENREANLAAIIERLQEKERHAAEVRRNKELQVELSG    
      130       140       150       160       170             

>>NP_001263239 (OMIM: 608362) stathmin-3 isoform 2 [Homo  (169 aa)
 initn: 636 init1: 484 opt: 582  Z-score: 415.7  bits: 83.1 E(85289): 2.1e-16
Smith-Waterman score: 582; 67.6% identity (88.5% similar) in 139 aa overlap (5-141:28-165)

                                      10        20        30       
pF1KB8                        MASSDIQVKELEKRASGQAFELILSPRSKESVPEFPL
                                  :..::.:.::::::.::.::.  :  : :: :.
NP_001 MKELSVLSLICSCFYTQPHPNTVYQYGDMEVKQLDKRASGQSFEVILKSPSDLS-PESPM
               10        20        30        40        50          

          40        50        60        70        80        90     
pF1KB8 --SPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFSK
         ::::::: ::::.::.:::::::::..::.:::::::.::::.:::.::.:::::::.
NP_001 LSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNNFSR
      60        70        80        90       100       110         

         100       110       120       130       140         
pF1KB8 MAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
       .:::::..::: .:: :::..::  ::::::. :  :::.:::...        
NP_001 QAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRRNKEQREEMSG    
     120       130       140       150       160             

>>NP_056978 (OMIM: 608362) stathmin-3 isoform 1 [Homo sa  (180 aa)
 initn: 636 init1: 484 opt: 582  Z-score: 415.3  bits: 83.1 E(85289): 2.2e-16
Smith-Waterman score: 582; 67.6% identity (88.5% similar) in 139 aa overlap (5-141:39-176)

                                         10        20        30    
pF1KB8                           MASSDIQVKELEKRASGQAFELILSPRSKESVPE
                                     :..::.:.::::::.::.::.  :  : ::
NP_056 KEKMKELSVLSLICSCFYTQPHPNTVYQYGDMEVKQLDKRASGQSFEVILKSPSDLS-PE
       10        20        30        40        50        60        

             40        50        60        70        80        90  
pF1KB8 FPL--SPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNN
        :.  ::::::: ::::.::.:::::::::..::.:::::::.::::.:::.::.:::::
NP_056 SPMLSSPPKKKDTSLEELQKRLEAAEERRKTQEAQVLKQLAERREHEREVLHKALEENNN
        70        80        90       100       110       120       

            100       110       120       130       140         
pF1KB8 FSKMAEEKLTHKMEANKENREAQMAAKLERLREKDKHIEEVRKNKESKDPADETEAD
       ::..:::::..::: .:: :::..::  ::::::. :  :::.:::...        
NP_056 FSRQAEEKLNYKMELSKEIREAHLAALRERLREKELHAAEVRRNKEQREEMSG    
       130       140       150       160       170       180    

>>NP_001186143 (OMIM: 600621) stathmin-2 isoform 1 [Homo  (187 aa)
 initn: 557 init1: 557 opt: 560  Z-score: 400.4  bits: 80.4 E(85289): 1.5e-15
Smith-Waterman score: 560; 71.0% identity (85.5% similar) in 138 aa overlap (5-140:39-176)

                                         10        20        30    
pF1KB8                           MASSDIQVKELEKRASGQAFELILSPRSKESVPE
                                     :..::...::::::::::::.: :  :   
NP_001 KEKMKELSMLSLICSCFYPEPRNINIYTYDDMEVKQINKRASGQAFELILKPPSPISEAP
       10        20        30        40        50        60        

           40        50        60        70        80        90    
pF1KB8 FPLSPPKKKDLSLEEIQKKLEAAEERRKSHEAEVLKQLAEKREHEKEVLQKAIEENNNFS
         :. ::::::::::::::::::::::::.::.::::::::::::.::::::.:::::::
NP_001 RTLASPKKKDLSLEEIQKKLEAAEERRKSQEAQVLKQLAEKREHEREVLQKALEENNNFS
       70        80        90       100       110       120        

          100       110       120        130        140           
pF1KB8 KMAEEKLTHKMEANKENREAQMAAKLERLREKD-KHIE-EVRKNKESKDPADETEAD  
       :::::::  :::  ::::::..:: .:::.::  : :  :.... ::.           
NP_001 KMAEEKLILKMEQIKENREANLAAIIERLQEKLVKFISSELKESIESQFLELQREGEKQ
      130       140       150       160       170       180       




149 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:49:02 2016 done: Fri Nov  4 10:49:03 2016
 Total Scan time:  5.580 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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