Result of FASTA (omim) for
pFN21AB8227
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8227, 185 aa
1>>>pF1KB8227 185 - 185 aa - 185 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5687+/-0.000282; mu= -0.0231+/- 0.018
mean_var=200.4596+/-41.084, 0's: 0 Z-trim(124.4): 18 B-trim: 0 in 0/59
Lambda= 0.090586
statistics sampled from 46042 (46060) to 46042 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.54), width: 16
Scan time: 5.620
The best scores are: opt bits E(85289)
NP_002405 (OMIM: 313470,450000) CD99 antigen isofo ( 185) 1248 174.0 1.2e-43
NP_001308297 (OMIM: 313470,450000) CD99 antigen is ( 184) 1231 171.8 5.5e-43
NP_001308296 (OMIM: 313470,450000) CD99 antigen is ( 160) 1077 151.6 5.7e-37
NP_001116370 (OMIM: 313470,450000) CD99 antigen is ( 169) 937 133.4 1.9e-31
NP_001308298 (OMIM: 313470,450000) CD99 antigen is ( 168) 920 131.1 8.8e-31
NP_001308299 (OMIM: 313470,450000) CD99 antigen is ( 168) 715 104.4 1e-22
NP_604395 (OMIM: 300846) CD99 antigen-like protein ( 213) 264 45.5 6.8e-05
NP_113650 (OMIM: 300846) CD99 antigen-like protein ( 262) 261 45.2 0.0001
XP_016885380 (OMIM: 300846) PREDICTED: CD99 antige ( 218) 255 44.3 0.00016
NP_001229543 (OMIM: 300846) CD99 antigen-like prot ( 272) 254 44.3 0.0002
XP_016885379 (OMIM: 300846) PREDICTED: CD99 antige ( 267) 252 44.0 0.00024
NP_604394 (OMIM: 300846) CD99 antigen-like protein ( 190) 249 43.5 0.00024
>>NP_002405 (OMIM: 313470,450000) CD99 antigen isoform a (185 aa)
initn: 1248 init1: 1248 opt: 1248 Z-score: 904.7 bits: 174.0 E(85289): 1.2e-43
Smith-Waterman score: 1248; 100.0% identity (100.0% similar) in 185 aa overlap (1-185:1-185)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
130 140 150 160 170 180
pF1KB8 TLLEK
:::::
NP_002 TLLEK
>>NP_001308297 (OMIM: 313470,450000) CD99 antigen isofor (184 aa)
initn: 1232 init1: 1078 opt: 1231 Z-score: 892.7 bits: 171.8 E(85289): 5.5e-43
Smith-Waterman score: 1231; 99.5% identity (99.5% similar) in 185 aa overlap (1-185:1-184)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
:::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
NP_001 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKEN-EQGEVDMESHRNANAEPAVQR
130 140 150 160 170
pF1KB8 TLLEK
:::::
NP_001 TLLEK
180
>>NP_001308296 (OMIM: 313470,450000) CD99 antigen isofor (160 aa)
initn: 1077 init1: 1077 opt: 1077 Z-score: 784.8 bits: 151.6 E(85289): 5.7e-37
Smith-Waterman score: 1077; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
::::::::::::::::::::::::::::::::::::::
NP_001 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENDG
130 140 150 160
pF1KB8 TLLEK
>>NP_001116370 (OMIM: 313470,450000) CD99 antigen isofor (169 aa)
initn: 932 init1: 932 opt: 937 Z-score: 685.6 bits: 133.4 E(85289): 1.9e-31
Smith-Waterman score: 1099; 91.4% identity (91.4% similar) in 185 aa overlap (1-185:1-169)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::: :::::::::::
NP_001 MARGAALALLLFGLLGVLVAAPDGGFDLSDALP----------------GDDFDLGDAVV
10 20 30 40
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
110 120 130 140 150 160
pF1KB8 TLLEK
:::::
NP_001 TLLEK
>>NP_001308298 (OMIM: 313470,450000) CD99 antigen isofor (168 aa)
initn: 1157 init1: 762 opt: 920 Z-score: 673.6 bits: 131.1 E(85289): 8.8e-31
Smith-Waterman score: 1082; 90.8% identity (90.8% similar) in 185 aa overlap (1-185:1-168)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::: :::::::::::
NP_001 MARGAALALLLFGLLGVLVAAPDGGFDLSDALP----------------GDDFDLGDAVV
10 20 30 40
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
:::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::
NP_001 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKEN-EQGEVDMESHRNANAEPAVQR
110 120 130 140 150 160
pF1KB8 TLLEK
:::::
NP_001 TLLEK
>>NP_001308299 (OMIM: 313470,450000) CD99 antigen isofor (168 aa)
initn: 715 init1: 715 opt: 715 Z-score: 528.8 bits: 104.4 E(85289): 1e-22
Smith-Waterman score: 1083; 90.8% identity (90.8% similar) in 185 aa overlap (1-185:1-168)
10 20 30 40 50 60
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNENKKPTAIPKKPSAGDDFDLGDAVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGEGKGGSDGGGSHRKEGEE
:::::::::::::::::::::::::::::::::::::::::::
NP_001 DGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGGE-----------------
70 80 90 100
130 140 150 160 170 180
pF1KB8 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADAPGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKENAEQGEVDMESHRNANAEPAVQR
110 120 130 140 150 160
pF1KB8 TLLEK
:::::
NP_001 TLLEK
>>NP_604395 (OMIM: 300846) CD99 antigen-like protein 2 i (213 aa)
initn: 191 init1: 145 opt: 264 Z-score: 208.8 bits: 45.5 E(85289): 6.8e-05
Smith-Waterman score: 282; 36.7% identity (60.4% similar) in 207 aa overlap (3-183:5-197)
10 20 30 40
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFD---LSDALPDNENKKP-----TAIPKKP---
:.: :. : :.: ..:: .: :: : ::. .. . : :. :.:
NP_604 MVAWRSAFLVCLAFSL-ATLVQRGSGDFDDFNLEDAVKETSSVKQRWNHVTTTTKRPVTT
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 -----SAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGG
. :.::::.::. : .:: : . ::. ...:.::: :: : :.::
NP_604 RAPANTLGNDFDLADAL-DDRND--RDDGRRKPI--------AGGGGFSDKDLEDIVGGG
60 70 80 90 100
110 120 130 140 150
pF1KB8 E---GKGGSDGG-GSHRKEGEEADA-PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFKE
: :: .:: ::. : : ::.: :...:...:. ::.::.:.::.::.::
NP_604 EYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCF--
110 120 130 140 150 160
160 170 180
pF1KB8 NAEQG-EVDMESHRNANA----EPAVQRTLLEK
. .:: ..:. . .: .: :: :. . :
NP_604 SIQQGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPARI
170 180 190 200 210
>>NP_113650 (OMIM: 300846) CD99 antigen-like protein 2 i (262 aa)
initn: 231 init1: 145 opt: 261 Z-score: 205.5 bits: 45.2 E(85289): 0.0001
Smith-Waterman score: 287; 36.8% identity (60.6% similar) in 193 aa overlap (22-183:67-246)
10 20 30 40
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFDLSDALPDNEN--KKP---------
: .:.::.::: :... .::
NP_113 KETSSVKQPWDHTTTTTTNRPGTTRAPAKPPGSGLDLADALDDQDDGRRKPGIGGRERWN
40 50 60 70 80 90
50 60 70 80 90
pF1KB8 --TAIPKKP--------SAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSF
:. :.: . :.::::.::. : .:: : . ::. ...:.:
NP_113 HVTTTTKRPVTTRAPANTLGNDFDLADAL-DDRND--RDDGRRKPI--------AGGGGF
100 110 120 130 140
100 110 120 130 140
pF1KB8 SDADLADGVSGGE---GKGGSDGG-GSHRKEGEEADA-PGVIPGIVGAVVVAVAGAISSF
:: :: : :.::: :: .:: ::. : : ::.: :...:...:. ::.::.
NP_113 SDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSY
150 160 170 180 190 200
150 160 170 180
pF1KB8 IAYQKKKLCFKENAEQG-EVDMESHRNANA----EPAVQRTLLEK
:.::.::.:: . .:: ..:. . .: .: :: :. . :
NP_113 ISYQQKKFCF--SIQQGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAEPPPPPEPARI
210 220 230 240 250 260
>>XP_016885380 (OMIM: 300846) PREDICTED: CD99 antigen-li (218 aa)
initn: 191 init1: 145 opt: 255 Z-score: 202.3 bits: 44.3 E(85289): 0.00016
Smith-Waterman score: 273; 37.7% identity (61.2% similar) in 183 aa overlap (3-163:5-175)
10 20 30 40
pF1KB8 MARGAALALLLFGLLGVLVAAPDGGFD---LSDALPDNENKKP-----TAIPKKP---
:.: :. : :.: ..:: .: :: : ::. .. . : :. :.:
XP_016 MVAWRSAFLVCLAFSL-ATLVQRGSGDFDDFNLEDAVKETSSVKQRWNHVTTTTKRPVTT
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 -----SAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNHPSSSGSFSDADLADGVSGG
. :.::::.::. : .:: : . ::. ...:.::: :: : :.::
XP_016 RAPANTLGNDFDLADAL-DDRND--RDDGRRKPI--------AGGGGFSDKDLEDIVGGG
60 70 80 90 100
110 120 130 140 150
pF1KB8 E---GKGGSDGG-GSHRKEGEEADA-PGVIPGIVGAVVVAVAGAISSFIAYQKKKLCFK-
: :: .:: ::. : : ::.: :...:...:. ::.::.:.::.::.::.
XP_016 EYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMALIGAVSSYISYQQKKFCFSI
110 120 130 140 150 160
160 170 180
pF1KB8 ENAEQGEVDMESHRNANAEPAVQRTLLEK
..: :.
XP_016 QHAAAGQGNAALPSSLSFCFSLDASSFAPCSGASLPLFSLLLPWHSPTWL
170 180 190 200 210
>>NP_001229543 (OMIM: 300846) CD99 antigen-like protein (272 aa)
initn: 231 init1: 145 opt: 254 Z-score: 200.3 bits: 44.3 E(85289): 0.0002
Smith-Waterman score: 274; 35.8% identity (58.3% similar) in 204 aa overlap (20-183:64-256)
10 20 30 40
pF1KB8 MARGAALALLLFGLLGVLVAAPDG-----GFDLSDALPDNEN--KKP--
: : : :.::.::: :... .::
NP_001 DAVKETSSVKQPWDHTTTTTTNRPGTTRAPAKPPGPTEGSGLDLADALDDQDDGRRKPGI
40 50 60 70 80 90
50 60 70 80
pF1KB8 ---------TAIPKKP--------SAGDDFDLGDAVVDGENDDPRPPNPPKPMPNPNPNH
:. :.: . :.::::.::. : .:: : . ::.
NP_001 GGRERWNHVTTTTKRPVTTRAPANTLGNDFDLADAL-DDRND--RDDGRRKPI-------
100 110 120 130 140
90 100 110 120 130
pF1KB8 PSSSGSFSDADLADGVSGGE---GKGGSDGG-GSHRKEGEEADA-PGVIPGIVGAVVVAV
...:.::: :: : :.::: :: .:: ::. : : ::.: :...:...:.
NP_001 -AGGGGFSDKDLEDIVGGGEYKPDKGKGDGRYGSNDDPGSGMVAEPGTIAGVASALAMAL
150 160 170 180 190 200
140 150 160 170 180
pF1KB8 AGAISSFIAYQKKKLCFK-ENAEQGE----VDMESHRNANA----EPAVQRTLLEK
::.::.:.::.::.::. ..: :. .:. . .: .: :: :. . :
NP_001 IGAVSSYISYQQKKFCFSIQHAAAGQEGLNADYVKGENLEAVVCEEPQVKYSTLHTQSAE
210 220 230 240 250 260
NP_001 PPPPPEPARI
270
185 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:45:00 2016 done: Fri Nov 4 10:45:01 2016
Total Scan time: 5.620 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]