Result of FASTA (omim) for
pFN21AB8219
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8219, 317 aa
1>>>pF1KB8219 317 - 317 aa - 317 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0169+/-0.000355; mu= 12.6757+/- 0.022
mean_var=77.0814+/-15.447, 0's: 0 Z-trim(114.2): 15 B-trim: 0 in 0/56
Lambda= 0.146083
statistics sampled from 23937 (23945) to 23937 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.281), width: 16
Scan time: 7.270
The best scores are: opt bits E(85289)
NP_000993 (OMIM: 180510) 60S acidic ribosomal prot ( 317) 2027 436.5 3.4e-122
NP_444505 (OMIM: 180510) 60S acidic ribosomal prot ( 317) 2027 436.5 3.4e-122
NP_000995 (OMIM: 180530) 60S acidic ribosomal prot ( 115) 165 43.9 0.00019
NP_998890 (OMIM: 180520) 60S acidic ribosomal prot ( 89) 163 43.4 0.0002
NP_000994 (OMIM: 180520) 60S acidic ribosomal prot ( 114) 163 43.5 0.00025
>>NP_000993 (OMIM: 180510) 60S acidic ribosomal protein (317 aa)
initn: 2027 init1: 2027 opt: 2027 Z-score: 2314.8 bits: 436.5 E(85289): 3.4e-122
Smith-Waterman score: 2027; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KB8 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA
250 260 270 280 290 300
310
pF1KB8 KEESEESDEDMGFGLFD
:::::::::::::::::
NP_000 KEESEESDEDMGFGLFD
310
>>NP_444505 (OMIM: 180510) 60S acidic ribosomal protein (317 aa)
initn: 2027 init1: 2027 opt: 2027 Z-score: 2314.8 bits: 436.5 E(85289): 3.4e-122
Smith-Waterman score: 2027; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KB8 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 MPREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 MRKAIRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 VTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 SPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_444 IINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEA
250 260 270 280 290 300
310
pF1KB8 KEESEESDEDMGFGLFD
:::::::::::::::::
NP_444 KEESEESDEDMGFGLFD
310
>>NP_000995 (OMIM: 180530) 60S acidic ribosomal protein (115 aa)
initn: 253 init1: 144 opt: 165 Z-score: 200.9 bits: 43.9 E(85289): 0.00019
Smith-Waterman score: 165; 61.1% identity (72.2% similar) in 54 aa overlap (269-317:62-115)
240 250 260 270 280 290
pF1KB8 HSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPA--
::. : :.: :: .:::::..:::
NP_000 IEADDDRLNKVISELNGKNIEDVIAQGIGKLASVPAGGAVAVSAAPGSAAPAAGSAPAAA
40 50 60 70 80 90
300 310
pF1KB8 ---KVEAKEESEESDEDMGFGLFD
: : ::::::::.::::::::
NP_000 EEKKDEKKEESEESDDDMGFGLFD
100 110
>>NP_998890 (OMIM: 180520) 60S acidic ribosomal protein (89 aa)
initn: 265 init1: 110 opt: 163 Z-score: 200.4 bits: 43.4 E(85289): 0.0002
Smith-Waterman score: 163; 69.6% identity (82.6% similar) in 46 aa overlap (279-317:44-89)
250 260 270 280 290 300
pF1KB8 LALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTA---APAAAAAPA---KVEAK-
::.:.:. : ::..::::: :::::
NP_998 LILHDDEVTVTALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK
20 30 40 50 60 70
310
pF1KB8 EESEESDEDMGFGLFD
:::::::.::::::::
NP_998 EESEESDDDMGFGLFD
80
>>NP_000994 (OMIM: 180520) 60S acidic ribosomal protein (114 aa)
initn: 248 init1: 110 opt: 163 Z-score: 198.7 bits: 43.5 E(85289): 0.00025
Smith-Waterman score: 163; 69.6% identity (82.6% similar) in 46 aa overlap (279-317:69-114)
250 260 270 280 290 300
pF1KB8 LALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTA---APAAAAAPA---KVEAK-
::.:.:. : ::..::::: :::::
NP_000 VEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKK
40 50 60 70 80 90
310
pF1KB8 EESEESDEDMGFGLFD
:::::::.::::::::
NP_000 EESEESDDDMGFGLFD
100 110
317 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:40:18 2016 done: Fri Nov 4 10:40:19 2016
Total Scan time: 7.270 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]