Result of FASTA (omim) for
pFN21AB8200
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8200, 372 aa
1>>>pF1KB8200 372 - 372 aa - 372 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4754+/-0.000398; mu= 16.0858+/- 0.025
mean_var=80.8406+/-16.687, 0's: 0 Z-trim(112.2): 133 B-trim: 48 in 1/55
Lambda= 0.142646
statistics sampled from 20902 (21041) to 20902 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.247), width: 16
Scan time: 5.120
The best scores are: opt bits E(85289)
NP_005711 (OMIM: 604223) actin-related protein 2/3 ( 372) 2565 537.8 1.5e-152
XP_006715889 (OMIM: 604223) PREDICTED: actin-relat ( 372) 2565 537.8 1.5e-152
XP_006715888 (OMIM: 604223) PREDICTED: actin-relat ( 372) 2565 537.8 1.5e-152
NP_006400 (OMIM: 604220) actin-related protein 2/3 ( 370) 1851 390.9 2.5e-108
NP_001177925 (OMIM: 604220) actin-related protein ( 356) 1717 363.3 4.9e-100
NP_004795 (OMIM: 604333) probable cytosolic iron-s ( 339) 222 55.6 2e-07
NP_008882 (OMIM: 601787) transcription initiation ( 800) 161 43.3 0.0023
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655) 153 41.6 0.0062
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655) 153 41.6 0.0062
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655) 153 41.6 0.0062
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658) 153 41.6 0.0062
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672) 153 41.6 0.0063
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672) 153 41.6 0.0063
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672) 153 41.6 0.0063
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675) 153 41.6 0.0063
XP_016878349 (OMIM: 602703,616212) PREDICTED: kata ( 675) 153 41.6 0.0063
XP_011521112 (OMIM: 602703,616212) PREDICTED: kata ( 675) 153 41.6 0.0063
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675) 153 41.6 0.0063
NP_001246 (OMIM: 603618) cell division cycle prote ( 499) 151 41.1 0.0066
>>NP_005711 (OMIM: 604223) actin-related protein 2/3 com (372 aa)
initn: 2565 init1: 2565 opt: 2565 Z-score: 2859.8 bits: 537.8 E(85289): 1.5e-152
Smith-Waterman score: 2565; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KB8 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK
310 320 330 340 350 360
370
pF1KB8 SLESALKDLKIK
::::::::::::
NP_005 SLESALKDLKIK
370
>>XP_006715889 (OMIM: 604223) PREDICTED: actin-related p (372 aa)
initn: 2565 init1: 2565 opt: 2565 Z-score: 2859.8 bits: 537.8 E(85289): 1.5e-152
Smith-Waterman score: 2565; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KB8 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK
310 320 330 340 350 360
370
pF1KB8 SLESALKDLKIK
::::::::::::
XP_006 SLESALKDLKIK
370
>>XP_006715888 (OMIM: 604223) PREDICTED: actin-related p (372 aa)
initn: 2565 init1: 2565 opt: 2565 Z-score: 2859.8 bits: 537.8 E(85289): 1.5e-152
Smith-Waterman score: 2565; 100.0% identity (100.0% similar) in 372 aa overlap (1-372:1-372)
10 20 30 40 50 60
pF1KB8 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 APTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVATL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVK
310 320 330 340 350 360
370
pF1KB8 SLESALKDLKIK
::::::::::::
XP_006 SLESALKDLKIK
370
>>NP_006400 (OMIM: 604220) actin-related protein 2/3 com (370 aa)
initn: 1504 init1: 1183 opt: 1851 Z-score: 2065.7 bits: 390.9 E(85289): 2.5e-108
Smith-Waterman score: 1851; 68.1% identity (89.0% similar) in 373 aa overlap (1-371:1-369)
10 20 30 40 50 60
pF1KB8 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW
:. :.::.:::.:::::.::::::. :::::::::.:.:..:.:.::::::::..:::::
NP_006 MSLHQFLLEPITCHAWNRDRTQIALSPNNHEVHIYKKNGSQWVKAHELKEHNGHITGIDW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI
::.:.::::::.:::::::. : .:::::::::::::: :.:.: :::::::::.:.:
NP_006 APKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
:.::::.:::::: :::::::::::::::::::::::::::::::::.::::::::.:.:
NP_006 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKP
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 APTPWGSKMPFGELM--FESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVA
: ::::::::::.:: : .:.. :::::: :::::::.::::::::: .:::.:.. :.
NP_006 ASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 TLASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTA
:: .: ::::...:...::.::::::: :.::.:: : :.: ..::.:::: ::...:
NP_006 TLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDR-GCLTFVSKLDIPKQSIQRNMSA
250 260 270 280 290
300 310 320 330 340 350
pF1KB8 RERFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD
:::.:.::.:..: ..: :..::.::..:.:. : : .:::::.::.:.:::
NP_006 MERFRNMDKRATTEDRNTA---LETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWD
300 310 320 330 340 350
360 370
pF1KB8 VKSLESALKDLKIK
:.:::... :.:
NP_006 FKTLESSIQGLRIM
360 370
>>NP_001177925 (OMIM: 604220) actin-related protein 2/3 (356 aa)
initn: 1370 init1: 1049 opt: 1717 Z-score: 1916.9 bits: 363.3 E(85289): 4.9e-100
Smith-Waterman score: 1717; 67.8% identity (88.6% similar) in 351 aa overlap (23-371:9-355)
10 20 30 40 50 60
pF1KB8 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTKVHELKEHNGQVTGIDW
::. :::::::::.:.:..:.:.::::::::..:::::
NP_001 MPGTGIVLIALSPNNHEVHIYKKNGSQWVKAHELKEHNGHITGIDW
10 20 30 40
70 80 90 100 110 120
pF1KB8 APESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNENKFAVGSGSRVI
::.:.::::::.:::::::. : .:::::::::::::: :.:.: :::::::::.:.:
NP_001 APKSDRIVTCGADRNAYVWSQKDGVWKPTLVILRINRAATFVKWSPLENKFAVGSGARLI
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRIFSAYIKEVEERP
:.::::.:::::: :::::::::::::::::::::::::::::::::.::::::::.:.:
NP_001 SVCYFESENDWWVSKHIKKPIRSTVLSLDWHPNNVLLAAGSCDFKCRVFSAYIKEVDEKP
110 120 130 140 150 160
190 200 210 220 230
pF1KB8 APTPWGSKMPFGELM--FESSSSCGWVHGVCFSASGSRVAWVSHDSTVCLADADKKMAVA
: ::::::::::.:: : .:.. :::::: :::::::.::::::::: .:::.:.. :.
NP_001 ASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB8 TLASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTA
:: .: ::::...:...::.::::::: :.::.:: : :.: ..::.:::: ::...:
NP_001 TLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDR-GCLTFVSKLDIPKQSIQRNMSA
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB8 RERFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD
:::.:.::.:..: ..: :..::.::..:.:. : : .:::::.::.:.:::
NP_001 MERFRNMDKRATTEDRNTA---LETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWD
290 300 310 320 330 340
360 370
pF1KB8 VKSLESALKDLKIK
:.:::... :.:
NP_001 FKTLESSIQGLRIM
350
>>NP_004795 (OMIM: 604333) probable cytosolic iron-sulfu (339 aa)
initn: 218 init1: 109 opt: 222 Z-score: 254.5 bits: 55.6 E(85289): 2e-07
Smith-Waterman score: 222; 26.7% identity (58.8% similar) in 165 aa overlap (15-178:68-230)
10 20 30 40
pF1KB8 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGAKWTK
::. . .: . . :..:. .
NP_004 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC
40 50 60 70 80 90
50 60 70 80 90 100
pF1KB8 VHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRIN-RAARCVR
: :. :...: .. ::: .: ..::. :....:: . . . .: . . .. :
NP_004 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV
100 110 120 130 140 150
110 120 130 140 150 160
pF1KB8 WAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAAGSCD
: :... .: .: . .... : :.:.:: : .. .::: :: . :.. ::. : :
NP_004 WHPSQELLASASYDDTVKL-YREEEDDWVCCATLEGH-ESTVWSLAFDPSGQRLASCSDD
160 170 180 190 200 210
170 180 190 200 210 220
pF1KB8 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAWVSHD
::. :. :.
NP_004 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA
220 230 240 250 260 270
>>NP_008882 (OMIM: 601787) transcription initiation fact (800 aa)
initn: 135 init1: 69 opt: 161 Z-score: 181.4 bits: 43.3 E(85289): 0.0023
Smith-Waterman score: 170; 24.8% identity (48.8% similar) in 258 aa overlap (10-267:545-762)
10 20 30
pF1KB8 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG
:. ... ::. . .. :... :
NP_008 LIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLW--SL
520 530 540 550 560 570
40 50 60 70 80 90
pF1KB8 AKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAA
.: . : :: : ...: . .:. : :: : .:. ..: .. .
NP_008 QTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDH--YQPLRIFAGHLADV
580 590 600 610 620 630
100 110 120 130 140 150
pF1KB8 RCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNNVLLAA
:.:. :: : :.::..:.. . . : : .: .. . :: . ::. .::.
NP_008 NCTRFHPNSNYVATGSADRTVRLWDVLNGN----CVRIFTGHKGPIHSLTFSPNGRFLAT
640 650 660 670 680
160 170 180 190 200 210
pF1KB8 GSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSASGSRVAW
:. : . ... : . ::: .... :. . :: .: .:
NP_008 GATDGRVLLWDI--------------GHGLMVGELKGHTDTVCS----LRFSRDGEILAS
690 700 710 720
220 230 240 250 260 270
pF1KB8 VSHDSTVCLADADKKMAVATLASETLPLLALTFITDNSLVAAGHDCFPVLFTYDAAAGML
: :.:: : :: : : : : ::. .:.:: .:
NP_008 GSMDNTVRLWDAIK-------AFEDLE-------TDDFTTATGHINLPENSQELLLGTYM
730 740 750 760 770
280 290 300 310 320 330
pF1KB8 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAGLDSLHKNSVSQISVLSGGK
NP_008 TKSTPVVHLHFTRRNLVLAAGAYSPQ
780 790 800
>>XP_016878353 (OMIM: 602703,616212) PREDICTED: katanin (655 aa)
initn: 96 init1: 68 opt: 153 Z-score: 173.7 bits: 41.6 E(85289): 0.0062
Smith-Waterman score: 153; 21.1% identity (53.8% similar) in 266 aa overlap (10-260:65-312)
10 20 30
pF1KB8 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG
:. : . :. .. ..... .
XP_016 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB8 AKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI---N
:: .. : :.... ..:. : .. ... . : : .: .. . ..: .
XP_016 AKILRT--LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKG-----CVFRYRGHS
100 110 120 130 140
100 110 120 130 140 150
pF1KB8 RAARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKK-PIRS-TVLSLDWHPNN
.:.::.:..:. . .: .. ...... : . : ... : .. : ...:::.
XP_016 QAVRCLRFSPDGKWLASAADDHTVKL------WDLTAGKMMSEFPGHTGPVNVVEFHPNE
150 160 170 180 190 200
160 170 180 190 200
pF1KB8 VLLAAGSCDFKCRIFS----AYIKEVEERPAPTPWGSKMPFGELMF----ESSSSCGWVH
:::.:: : :... .. .: .:.:. : : .. .: ::
XP_016 YLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEP
210 220 230 240 250 260
210 220 230 240 250 260
pF1KB8 GVCFSASGSRVAWVS-HDSTVCLADADKKMAVATLASETLPLLA-LTFITDNSLVAAGHD
::.. : : . : ..: :. ..:: :.. .. :: .: .. ::
XP_016 ERCFDVV--LVNWGKVADLAIC---NDQLIGVAFSQSNVSSYVVDLTRVTRTGTVARDPV
270 280 290 300 310
270 280 290 300 310 320
pF1KB8 CFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAGLDSL
XP_016 QDHRPLAQPLPNPSAPLRRIYERPSTTCSKPQRVKQNSESERRSPSSEDDRDERESRAEI
320 330 340 350 360 370
>>XP_016878352 (OMIM: 602703,616212) PREDICTED: katanin (655 aa)
initn: 96 init1: 68 opt: 153 Z-score: 173.7 bits: 41.6 E(85289): 0.0062
Smith-Waterman score: 153; 21.1% identity (53.8% similar) in 266 aa overlap (10-260:65-312)
10 20 30
pF1KB8 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG
:. : . :. .. ..... .
XP_016 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB8 AKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI---N
:: .. : :.... ..:. : .. ... . : : .: .. . ..: .
XP_016 AKILRT--LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKG-----CVFRYRGHS
100 110 120 130 140
100 110 120 130 140 150
pF1KB8 RAARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKK-PIRS-TVLSLDWHPNN
.:.::.:..:. . .: .. ...... : . : ... : .. : ...:::.
XP_016 QAVRCLRFSPDGKWLASAADDHTVKL------WDLTAGKMMSEFPGHTGPVNVVEFHPNE
150 160 170 180 190 200
160 170 180 190 200
pF1KB8 VLLAAGSCDFKCRIFS----AYIKEVEERPAPTPWGSKMPFGELMF----ESSSSCGWVH
:::.:: : :... .. .: .:.:. : : .. .: ::
XP_016 YLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEP
210 220 230 240 250 260
210 220 230 240 250 260
pF1KB8 GVCFSASGSRVAWVS-HDSTVCLADADKKMAVATLASETLPLLA-LTFITDNSLVAAGHD
::.. : : . : ..: :. ..:: :.. .. :: .: .. ::
XP_016 ERCFDVV--LVNWGKVADLAIC---NDQLIGVAFSQSNVSSYVVDLTRVTRTGTVARDPV
270 280 290 300 310
270 280 290 300 310 320
pF1KB8 CFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAGLDSL
XP_016 QDHRPLAQPLPNPSAPLRRIYERPSTTCSKPQRVKQNSESERRSPSSEDDRDERESRAEI
320 330 340 350 360 370
>>NP_005877 (OMIM: 602703,616212) katanin p80 WD40 repea (655 aa)
initn: 96 init1: 68 opt: 153 Z-score: 173.7 bits: 41.6 E(85289): 0.0062
Smith-Waterman score: 153; 21.1% identity (53.8% similar) in 266 aa overlap (10-260:65-312)
10 20 30
pF1KB8 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG
:. : . :. .. ..... .
NP_005 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEA
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB8 AKWTKVHELKEHNGQVTGIDWAPESNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI---N
:: .. : :.... ..:. : .. ... . : : .: .. . ..: .
NP_005 AKILRT--LMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKG-----CVFRYRGHS
100 110 120 130 140
100 110 120 130 140 150
pF1KB8 RAARCVRWAPNENKFAVGSGSRVISICYFEQENDWWVCKHIKK-PIRS-TVLSLDWHPNN
.:.::.:..:. . .: .. ...... : . : ... : .. : ...:::.
NP_005 QAVRCLRFSPDGKWLASAADDHTVKL------WDLTAGKMMSEFPGHTGPVNVVEFHPNE
150 160 170 180 190 200
160 170 180 190 200
pF1KB8 VLLAAGSCDFKCRIFS----AYIKEVEERPAPTPWGSKMPFGELMF----ESSSSCGWVH
:::.:: : :... .. .: .:.:. : : .. .: ::
NP_005 YLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEP
210 220 230 240 250 260
210 220 230 240 250 260
pF1KB8 GVCFSASGSRVAWVS-HDSTVCLADADKKMAVATLASETLPLLA-LTFITDNSLVAAGHD
::.. : : . : ..: :. ..:: :.. .. :: .: .. ::
NP_005 ERCFDVV--LVNWGKVADLAIC---NDQLIGVAFSQSNVSSYVVDLTRVTRTGTVARDPV
270 280 290 300 310
270 280 290 300 310 320
pF1KB8 CFPVLFTYDAAAGMLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGGTAAGAGLDSL
NP_005 QDHRPLAQPLPNPSAPLRRIYERPSTTCSKPQRVKQNSESERRSPSSEDDRDERESRAEI
320 330 340 350 360 370
372 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 10:29:55 2016 done: Fri Nov 4 10:29:56 2016
Total Scan time: 5.120 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]