FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8187, 452 aa
  1>>>pF1KB8187 452 - 452 aa - 452 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.1865+/-0.0015; mu= -7.2870+/- 0.086
 mean_var=424.7496+/-94.291, 0's: 0 Z-trim(108.3): 355  B-trim: 0 in 0/49
 Lambda= 0.062231
 statistics sampled from 9743 (10122) to 9743 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.311), width:  16
 Scan time:  2.850

The best scores are:                                      opt bits E(32554)
CCDS7768.1 ILK gene_id:3611|Hs108|chr11            ( 452) 3138 297.0 2.7e-80
CCDS60713.1 ILK gene_id:3611|Hs108|chr11           ( 318) 2201 212.6 4.6e-55
CCDS60712.1 ILK gene_id:3611|Hs108|chr11           ( 391) 1812 177.8 1.7e-44


>>CCDS7768.1 ILK gene_id:3611|Hs108|chr11                 (452 aa)
 initn: 3138 init1: 3138 opt: 3138  Z-score: 1555.0  bits: 297.0 E(32554): 2.7e-80
Smith-Waterman score: 3138; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:1-452)

               10        20        30        40        50        60
pF1KB8 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKGTTRTRPRNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKGTTRTRPRNG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 TLNKHSGIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TLNKHSGIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 RLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 MARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQCPGRMYAPAWVAPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQCPGRMYAPAWVAPEA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 LQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPH
              370       380       390       400       410       420

              430       440       450  
pF1KB8 VCKLMKICMNEDPAKRPKFDMIVPILEKMQDK
       ::::::::::::::::::::::::::::::::
CCDS77 VCKLMKICMNEDPAKRPKFDMIVPILEKMQDK
              430       440       450  

>>CCDS60713.1 ILK gene_id:3611|Hs108|chr11                (318 aa)
 initn: 2201 init1: 2201 opt: 2201  Z-score: 1102.1  bits: 212.6 E(32554): 4.6e-55
Smith-Waterman score: 2201; 100.0% identity (100.0% similar) in 318 aa overlap (135-452:1-318)

          110       120       130       140       150       160    
pF1KB8 HYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPY
                                     ::::::::::::::::::::::::::::::
CCDS60                               MPVDKAKAPLRELLRERAEKMGQNLNRIPY
                                             10        20        30

          170       180       190       200       210       220    
pF1KB8 KDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 KDTFWKGTTRTRPRNGTLNKHSGIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKV
               40        50        60        70        80        90

          230       240       250       260       270       280    
pF1KB8 RDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEG
              100       110       120       130       140       150

          290       300       310       320       330       340    
pF1KB8 TNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 TNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSF
              160       170       180       190       200       210

          350       360       370       380       390       400    
pF1KB8 QCPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 QCPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKV
              220       230       240       250       260       270

          410       420       430       440       450  
pF1KB8 ALEGLRPTIPPGISPHVCKLMKICMNEDPAKRPKFDMIVPILEKMQDK
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ALEGLRPTIPPGISPHVCKLMKICMNEDPAKRPKFDMIVPILEKMQDK
              280       290       300       310        

>>CCDS60712.1 ILK gene_id:3611|Hs108|chr11                (391 aa)
 initn: 2535 init1: 1723 opt: 1812  Z-score: 912.4  bits: 177.8 E(32554): 1.7e-44
Smith-Waterman score: 2429; 83.0% identity (83.8% similar) in 452 aa overlap (1-452:1-391)

               10        20        30        40        50        60
pF1KB8 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.  
CCDS60 NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAES--
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB8 ANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKGTTRTRPRNG
                                          ::   :    .: ..  :::     
CCDS60 -----------------------------------GQR--RWARISTVFH--TRT-----
                                         120         130           

              190       200       210       220       230       240
pF1KB8 TLNKHSGIDFKQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECP
           :::     :           : ::::::::::::::::::::::::::::::::::
CCDS60 ----HSGRGPPAL-----------GPLWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECP
              140                  150       160       170         

              250       260       270       280       290       300
pF1KB8 RLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 RLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALD
     180       190       200       210       220       230         

              310       320       330       340       350       360
pF1KB8 MARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQCPGRMYAPAWVAPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQCPGRMYAPAWVAPEA
     240       250       260       270       280       290         

              370       380       390       400       410       420
pF1KB8 LQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPGISPH
     300       310       320       330       340       350         

              430       440       450  
pF1KB8 VCKLMKICMNEDPAKRPKFDMIVPILEKMQDK
       ::::::::::::::::::::::::::::::::
CCDS60 VCKLMKICMNEDPAKRPKFDMIVPILEKMQDK
     360       370       380       390 




452 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 10:20:04 2016 done: Fri Nov  4 10:20:05 2016
 Total Scan time:  2.850 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]