Result of FASTA (ccds) for
pFN21AB8129
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8129, 341 aa
1>>>pF1KB8129 341 - 341 aa - 341 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3126+/-0.000819; mu= 12.0391+/- 0.050
mean_var=95.6929+/-18.712, 0's: 0 Z-trim(109.6): 15 B-trim: 10 in 1/52
Lambda= 0.131110
statistics sampled from 11019 (11030) to 11019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.339), width: 16
Scan time: 2.010
The best scores are: opt bits E(32554)
CCDS7765.1 ARFIP2 gene_id:23647|Hs108|chr11 ( 341) 2216 429.1 2.5e-120
CCDS55740.1 ARFIP2 gene_id:23647|Hs108|chr11 ( 303) 1963 381.3 5.7e-106
CCDS73250.1 ARFIP2 gene_id:23647|Hs108|chr11 ( 374) 1794 349.3 2.9e-96
CCDS55739.1 ARFIP2 gene_id:23647|Hs108|chr11 ( 256) 1506 294.8 5.2e-80
CCDS3780.1 ARFIP1 gene_id:27236|Hs108|chr4 ( 341) 1358 266.8 1.8e-71
CCDS34080.1 ARFIP1 gene_id:27236|Hs108|chr4 ( 373) 1261 248.5 6.4e-66
>>CCDS7765.1 ARFIP2 gene_id:23647|Hs108|chr11 (341 aa)
initn: 2216 init1: 2216 opt: 2216 Z-score: 2273.8 bits: 429.1 E(32554): 2.5e-120
Smith-Waterman score: 2216; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)
10 20 30 40 50 60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GLIPTGSGRHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GLIPTGSGRHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 DLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLL
250 260 270 280 290 300
310 320 330 340
pF1KB8 FHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
:::::::::::::::::::::::::::::::::::::::::
CCDS77 FHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
310 320 330 340
>>CCDS55740.1 ARFIP2 gene_id:23647|Hs108|chr11 (303 aa)
initn: 1963 init1: 1963 opt: 1963 Z-score: 2016.0 bits: 381.3 E(32554): 5.7e-106
Smith-Waterman score: 1963; 100.0% identity (100.0% similar) in 303 aa overlap (39-341:1-303)
10 20 30 40 50 60
pF1KB8 AATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGDGLIPTGSG
::::::::::::::::::::::::::::::
CCDS55 MVSGPNLNETSIVSGGYGGSGDGLIPTGSG
10 20 30
70 80 90 100 110 120
pF1KB8 RHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RHPSHSTTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELEL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 QIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAET
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 QKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLG
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 PRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAY
220 230 240 250 260 270
310 320 330 340
pF1KB8 FAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
:::::::::::::::::::::::::::::::::
CCDS55 FAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
280 290 300
>>CCDS73250.1 ARFIP2 gene_id:23647|Hs108|chr11 (374 aa)
initn: 1794 init1: 1794 opt: 1794 Z-score: 1841.8 bits: 349.3 E(32554): 2.9e-96
Smith-Waterman score: 2133; 91.2% identity (91.2% similar) in 373 aa overlap (2-341:2-374)
10 20 30 40 50 60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
10 20 30 40 50 60
70 80
pF1KB8 GLIPTG---------------------------------SGRHPSHSTTPSGPGDEVARG
:::::: :::::::::::::::::::::
CCDS73 GLIPTGKSISCARREVWVGPQRCLVYLREAGVRELDPLGSGRHPSHSTTPSGPGDEVARG
70 80 90 100 110 120
90 100 110 120 130 140
pF1KB8 IAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLRETKRKYESVLQLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLRETKRKYESVLQLG
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB8 RALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNFFV
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB8 SSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATFQA
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB8 HRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNIKL
310 320 330 340 350 360
330 340
pF1KB8 RPPGAEKPSWLEEQ
::::::::::::::
CCDS73 RPPGAEKPSWLEEQ
370
>>CCDS55739.1 ARFIP2 gene_id:23647|Hs108|chr11 (256 aa)
initn: 1506 init1: 1506 opt: 1506 Z-score: 1549.9 bits: 294.8 E(32554): 5.2e-80
Smith-Waterman score: 1506; 99.6% identity (100.0% similar) in 237 aa overlap (105-341:20-256)
80 90 100 110 120 130
pF1KB8 TTPSGPGDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLR
.:::::::::::::::::::::::::::::
CCDS55 MKPALCLVAMGALVMDSSPQCTKQLLSERFGRGSRTVDLELELQIELLR
10 20 30 40
140 150 160 170 180 190
pF1KB8 ETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCK
50 60 70 80 90 100
200 210 220 230 240 250
pF1KB8 NGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGT
110 120 130 140 150 160
260 270 280 290 300 310
pF1KB8 RGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQK
170 180 190 200 210 220
320 330 340
pF1KB8 QLEQTLQQFNIKLRPPGAEKPSWLEEQ
:::::::::::::::::::::::::::
CCDS55 QLEQTLQQFNIKLRPPGAEKPSWLEEQ
230 240 250
>>CCDS3780.1 ARFIP1 gene_id:27236|Hs108|chr4 (341 aa)
initn: 1355 init1: 1227 opt: 1358 Z-score: 1396.7 bits: 266.8 E(32554): 1.8e-71
Smith-Waterman score: 1358; 59.9% identity (89.3% similar) in 337 aa overlap (8-341:7-341)
10 20 30 40 50 60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
: .. :::. .:::. . .. ....::.. . :: .:.::.:.: :. .. .
CCDS37 MAQESPKNSAAEIPVTSNGEVDD-SREHSFNRDLKHSLPSGLGLSETQITSHGFDNTKE
10 20 30 40 50
70 80 90 100 110
pF1KB8 GLIPTGSGRHPSHSTTPSGP---GDEVARGIAGEKFDIVKKWGINTYKCTKQLLSERFGR
:.: .:. . ... : ::: .::. .. : ::...:.::..::::::.:..::..::
CCDS37 GVIEAGAFQGGQRTQTKSGPVILADEI-KNPAMEKLELVRKWSLNTYKCTRQIISEKLGR
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 GSRTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPE
:::::::::: ::..::..:.:::..:.:...:...:.....::. ::::::::: :: :
CCDS37 GSRTVDLELEAQIDILRDNKKKYENILKLAQTLSTQLFQMVHTQRQLGDAFADLSLKSLE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 LQEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDA
:.:::::::.::::: :::::::::.:::..:.::::.::.:::::::::::.::.::::
CCDS37 LHEEFGYNADTQKLLAKNGETLLGAINFFIASVNTLVNKTIEDTLMTVKQYESARIEYDA
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 YRTDLEELSLGPRDAGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQ
::::::::.::::::.: ..:..: ::::..::.:.:.::..:::::::::.::.:.:
CCDS37 YRTDLEELNLGPRDANTLPKIEQSQHLFQAHKEKYDKMRNDVSVKLKFLEENKVKVLHNQ
240 250 260 270 280 290
300 310 320 330 340
pF1KB8 LLLFHNAVSAYFAGNQKQLEQTLQQFNIKLRPPGAEKPSWLEEQ
:.:::::..::::::::::::::.::.:::. ::.. :::::::
CCDS37 LVLFHNAIAAYFAGNQKQLEQTLKQFHIKLKTPGVDAPSWLEEQ
300 310 320 330 340
>>CCDS34080.1 ARFIP1 gene_id:27236|Hs108|chr4 (373 aa)
initn: 1337 init1: 1227 opt: 1261 Z-score: 1297.0 bits: 248.5 E(32554): 6.4e-66
Smith-Waterman score: 1293; 55.6% identity (81.6% similar) in 369 aa overlap (8-341:7-373)
10 20 30 40 50 60
pF1KB8 MTDGILGKAATMEIPIHGNGEARQLPEDDGLEQDLQQVMVSGPNLNETSIVSGGYGGSGD
: .. :::. .:::. . .. ....::.. . :: .:.::.:.: :. .. .
CCDS34 MAQESPKNSAAEIPVTSNGEVDD-SREHSFNRDLKHSLPSGLGLSETQITSHGFDNTKE
10 20 30 40 50
70 80
pF1KB8 GLIPTG-----------SGRHPSH---------------------STTPSGP---GDEVA
:.: .: : ::. . : ::: .::.
CCDS34 GVIEAGAFQGSPAPPLPSVMSPSRVAASRLAQQGSDLIVPAGGQRTQTKSGPVILADEI-
60 70 80 90 100 110
90 100 110 120 130 140
pF1KB8 RGIAGEKFDIVKKWGINTYKCTKQLLSERFGRGSRTVDLELELQIELLRETKRKYESVLQ
.. : ::...:.::..::::::.:..::..:::::::::::: ::..::..:.:::..:.
CCDS34 KNPAMEKLELVRKWSLNTYKCTRQIISEKLGRGSRTVDLELEAQIDILRDNKKKYENILK
120 130 140 150 160 170
150 160 170 180 190 200
pF1KB8 LGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETLLGAVNF
:...:...:.....::. ::::::::: :: ::.:::::::.::::: :::::::::.::
CCDS34 LAQTLSTQLFQMVHTQRQLGDAFADLSLKSLELHEEFGYNADTQKLLAKNGETLLGAINF
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB8 FVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRDAGTRGRLESAQATF
:..:.::::.::.:::::::::::.::.::::::::::::.::::::.: ..:..: :
CCDS34 FIASVNTLVNKTIEDTLMTVKQYESARIEYDAYRTDLEELNLGPRDANTLPKIEQSQHLF
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB8 QAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFNI
:::..::.:.:.::..:::::::::.::.:.::.:::::..::::::::::::::.::.:
CCDS34 QAHKEKYDKMRNDVSVKLKFLEENKVKVLHNQLVLFHNAIAAYFAGNQKQLEQTLKQFHI
300 310 320 330 340 350
330 340
pF1KB8 KLRPPGAEKPSWLEEQ
::. ::.. :::::::
CCDS34 KLKTPGVDAPSWLEEQ
360 370
341 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:48:38 2016 done: Fri Nov 4 09:48:38 2016
Total Scan time: 2.010 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]