Result of FASTA (omim) for
pFN21AB8112
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8112, 152 aa
1>>>pF1KB8112 152 - 152 aa - 152 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2393+/-0.000308; mu= 12.0381+/- 0.019
mean_var=66.4452+/-13.214, 0's: 0 Z-trim(117.2): 127 B-trim: 74 in 1/55
Lambda= 0.157341
statistics sampled from 28930 (29074) to 28930 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.341), width: 16
Scan time: 4.110
The best scores are: opt bits E(85289)
NP_003339 (OMIM: 603679) ubiquitin-conjugating enz ( 152) 1019 239.5 1.6e-63
NP_054895 (OMIM: 610538,616435) ubiquitin-conjugat ( 197) 464 113.6 1.7e-25
NP_003330 (OMIM: 602962) ubiquitin-conjugating enz ( 147) 460 112.6 2.4e-25
NP_871621 (OMIM: 602963) ubiquitin-conjugating enz ( 148) 459 112.4 2.9e-25
NP_871617 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 456 111.7 4.6e-25
NP_871616 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 456 111.7 4.6e-25
NP_871618 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 456 111.7 4.6e-25
NP_871615 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 456 111.7 4.6e-25
NP_871620 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 456 111.7 4.6e-25
NP_003331 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 456 111.7 4.6e-25
NP_871619 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 456 111.7 4.6e-25
NP_003329 (OMIM: 602961) ubiquitin-conjugating enz ( 147) 453 111.0 7.4e-25
NP_871622 (OMIM: 602963) ubiquitin-conjugating enz ( 149) 444 109.0 3.1e-24
NP_005330 (OMIM: 602846) ubiquitin-conjugating enz ( 200) 444 109.0 3.9e-24
XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-c ( 173) 443 108.8 4.1e-24
NP_862821 (OMIM: 602962) ubiquitin-conjugating enz ( 118) 432 106.2 1.7e-23
NP_001287724 (OMIM: 602963) ubiquitin-conjugating ( 118) 427 105.0 3.7e-23
XP_016864073 (OMIM: 602963) PREDICTED: ubiquitin-c ( 118) 427 105.0 3.7e-23
NP_003332 (OMIM: 602916) ubiquitin-conjugating enz ( 193) 429 105.6 4e-23
NP_001189405 (OMIM: 602916) ubiquitin-conjugating ( 160) 426 104.9 5.5e-23
NP_689866 (OMIM: 602163) ubiquitin-conjugating enz ( 201) 427 105.2 5.7e-23
XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-c ( 201) 427 105.2 5.7e-23
NP_003327 (OMIM: 300860,312180) ubiquitin-conjugat ( 152) 425 104.6 6.2e-23
NP_001265484 (OMIM: 604151) ubiquitin-conjugating ( 207) 426 105.0 6.8e-23
NP_001265483 (OMIM: 604151) ubiquitin-conjugating ( 207) 426 105.0 6.8e-23
NP_006348 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 426 105.0 6.8e-23
NP_872619 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 426 105.0 6.8e-23
XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-c ( 207) 426 105.0 6.8e-23
NP_003328 (OMIM: 179095) ubiquitin-conjugating enz ( 152) 423 104.2 8.5e-23
XP_016872098 (OMIM: 602961) PREDICTED: ubiquitin-c ( 110) 417 102.7 1.7e-22
NP_001297255 (OMIM: 610538,616435) ubiquitin-conju ( 167) 419 103.3 1.7e-22
NP_001191809 (OMIM: 602961) ubiquitin-conjugating ( 109) 400 98.9 2.4e-21
NP_001104582 (OMIM: 602846) ubiquitin-conjugating ( 157) 397 98.3 5.2e-21
NP_872607 (OMIM: 602916) ubiquitin-conjugating enz ( 176) 393 97.4 1.1e-20
NP_055316 (OMIM: 610309) ubiquitin-conjugating enz ( 222) 372 92.7 3.5e-19
NP_008950 (OMIM: 605574) ubiquitin-conjugating enz ( 179) 366 91.3 7.6e-19
NP_001269090 (OMIM: 300860,312180) ubiquitin-conju ( 119) 354 88.5 3.6e-18
NP_861517 (OMIM: 605574) ubiquitin-conjugating enz ( 140) 352 88.1 5.6e-18
XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-c ( 189) 342 85.9 3.5e-17
XP_005265488 (OMIM: 602916) PREDICTED: ubiquitin-c ( 167) 334 84.0 1.1e-16
NP_003338 (OMIM: 603721) ubiquitin-conjugating enz ( 154) 333 83.8 1.2e-16
NP_861516 (OMIM: 605574) ubiquitin-conjugating enz ( 150) 326 82.2 3.6e-16
NP_001243284 (OMIM: 603721) ubiquitin-conjugating ( 212) 320 80.9 1.2e-15
XP_011525054 (OMIM: 610309) PREDICTED: ubiquitin-c ( 162) 315 79.7 2.1e-15
NP_001104583 (OMIM: 602846) ubiquitin-conjugating ( 149) 307 77.9 7.1e-15
NP_001243285 (OMIM: 603721) ubiquitin-conjugating ( 122) 303 76.9 1.1e-14
NP_004214 (OMIM: 603890) ubiquitin/ISG15-conjugati ( 153) 297 75.6 3.5e-14
NP_919236 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 295 75.1 4.9e-14
XP_016879129 (OMIM: 601661) PREDICTED: SUMO-conjug ( 158) 295 75.1 4.9e-14
NP_003336 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 295 75.1 4.9e-14
>>NP_003339 (OMIM: 603679) ubiquitin-conjugating enzyme (152 aa)
initn: 1019 init1: 1019 opt: 1019 Z-score: 1261.4 bits: 239.5 E(85289): 1.6e-63
Smith-Waterman score: 1019; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
70 80 90 100 110 120
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
::::::::::::::::::::::::::::::::
NP_003 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
130 140 150
>>NP_054895 (OMIM: 610538,616435) ubiquitin-conjugating (197 aa)
initn: 437 init1: 294 opt: 464 Z-score: 578.9 bits: 113.6 E(85289): 1.7e-25
Smith-Waterman score: 464; 45.9% identity (71.9% similar) in 146 aa overlap (7-148:6-151)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
:. .: . : .:: ::: :... ... : : ..:.: :.::::...::
NP_054 MQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPE
10 20 30 40 50
70 80 90 100 110
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILK----DKWSPALQIRTVLLSIQALLSAPN
.::. :..::.: :::::.:. ::::::.:: : :.:.: ::: ::: :.: ::
NP_054 RYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN
60 70 80 90 100 110
120 130 140 150
pF1KB8 PDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI
::::: :.. ..: :. ...:: ::. .:
NP_054 PDDPLMADISSEFKYNKPAFLKNARQWTEKHARQKQKADEEEMLDNLPEAGDSRVHNSTQ
120 130 140 150 160 170
NP_054 KRKASQLVGIEKKFHPDV
180 190
>>NP_003330 (OMIM: 602962) ubiquitin-conjugating enzyme (147 aa)
initn: 460 init1: 460 opt: 460 Z-score: 575.9 bits: 112.6 E(85289): 2.4e-25
Smith-Waterman score: 460; 47.2% identity (72.9% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
.:: :: . : .: .: : .. .....: ::.:::..::.: : . .:
NP_003 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::: : :.:::::... : ::::::...::::: : ::::: .:: ::::::
NP_003 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. ..:. .::.. . . :: ::. :::
NP_003 LVPEIARIYKTDREKYNRIAREWTQKYAM
120 130 140
>>NP_871621 (OMIM: 602963) ubiquitin-conjugating enzyme (148 aa)
initn: 459 init1: 459 opt: 459 Z-score: 574.6 bits: 112.4 E(85289): 2.9e-25
Smith-Waterman score: 459; 47.2% identity (72.9% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
.:: :: . : .: .: : .. .....: ::.:::..::.: : . .:
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::: : :.:::::... : ::::::...::::: : ::::: .:: ::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. ..:. .::.. . . :: ::. :::
NP_871 LVPEIARIYKTDRDKYNRLAREWTEKYAML
120 130 140
>>NP_871617 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 456 init1: 456 opt: 456 Z-score: 571.0 bits: 111.7 E(85289): 4.6e-25
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
.:: :: . : .: .: : .. .....: ::.:::..::.: : . .:
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::: : :.:::::... : ::::::...::::: : ::::: .:: ::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. ..:. .::.. . . .: ::. :::
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>NP_871616 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 456 init1: 456 opt: 456 Z-score: 571.0 bits: 111.7 E(85289): 4.6e-25
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
.:: :: . : .: .: : .. .....: ::.:::..::.: : . .:
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::: : :.:::::... : ::::::...::::: : ::::: .:: ::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. ..:. .::.. . . .: ::. :::
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>NP_871618 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 456 init1: 456 opt: 456 Z-score: 571.0 bits: 111.7 E(85289): 4.6e-25
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
.:: :: . : .: .: : .. .....: ::.:::..::.: : . .:
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::: : :.:::::... : ::::::...::::: : ::::: .:: ::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. ..:. .::.. . . .: ::. :::
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>NP_871615 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 456 init1: 456 opt: 456 Z-score: 571.0 bits: 111.7 E(85289): 4.6e-25
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
.:: :: . : .: .: : .. .....: ::.:::..::.: : . .:
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::: : :.:::::... : ::::::...::::: : ::::: .:: ::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. ..:. .::.. . . .: ::. :::
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>NP_871620 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 456 init1: 456 opt: 456 Z-score: 571.0 bits: 111.7 E(85289): 4.6e-25
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
.:: :: . : .: .: : .. .....: ::.:::..::.: : . .:
NP_871 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::: : :.:::::... : ::::::...::::: : ::::: .:: ::::::
NP_871 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. ..:. .::.. . . .: ::. :::
NP_871 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>NP_003331 (OMIM: 602963) ubiquitin-conjugating enzyme (147 aa)
initn: 456 init1: 456 opt: 456 Z-score: 571.0 bits: 111.7 E(85289): 4.6e-25
Smith-Waterman score: 456; 46.5% identity (72.9% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KB8 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
.:: :: . : .: .: : .. .....: ::.:::..::.: : . .:
NP_003 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
.::. ::: : :.:::::... : ::::::...::::: : ::::: .:: ::::::
NP_003 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140 150
pF1KB8 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
:. ..:. .::.. . . .: ::. :::
NP_003 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
152 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 09:37:54 2016 done: Fri Nov 4 09:37:54 2016
Total Scan time: 4.110 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]