(Circular) (Six-base) MAPSORT of: pFN21AB7556.seq Check: 617 from: 1 to: 5518 pFN21AB7556 5518 bp With 182 enzymes: SgfI * February 27, 2009 14:39 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3328 278 Size: 53 83 186 936 1792 2468 Fragments arranged by size: 2468 1792 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2861 1937 Size: 924 4594 Acc65I G'GTAC_C Cuts at: 2839 2839 Size: 5518 AclI AA'CG_TT Cuts at: 1563 3645 4018 1563 Size: 2082 373 3063 Fragments arranged by size: 3063 2082 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3581 4965 5233 1632 Size: 1949 1384 268 1917 Fragments arranged by size: 1949 1917 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5321 AflIII A'CryG_T Cuts at: 1203 4417 5394 1203 Size: 3214 977 1327 Fragments arranged by size: 3214 1327 977 AgeI A'CCGG_T Cuts at: 4349 4349 Size: 5518 AhdI GACnn_n'nnGTC Cuts at: 4247 4247 Size: 5518 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5518 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5518 AlwNI CAG_nnn'CTG Cuts at: 2152 2627 3261 4833 2152 Size: 475 634 1572 2837 Fragments arranged by size: 2837 1572 634 475 ApaI G_GGCC'C Cuts at: 2187 2260 2187 Size: 73 5445 ApaLI G'TGCA_C Cuts at: 3575 4731 3575 Size: 1156 4362 ApoI r'AATT_y Cuts at: 1493 2827 3053 3205 5314 1493 Size: 1334 226 152 2109 1697 Fragments arranged by size: 2109 1697 1334 226 152 AseI AT'TA_AT Cuts at: 160 1032 4072 160 Size: 872 3040 1606 Fragments arranged by size: 3040 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5518 AvaI C'yCGr_G Cuts at: 1870 1943 2032 2843 1870 Size: 73 89 811 4545 Fragments arranged by size: 4545 811 89 73 BamHI G'GATC_C Cuts at: 2848 3215 2848 Size: 367 5151 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2116 2567 2839 4294 618 Size: 325 217 627 329 451 272 1455 1842 Fragments arranged by size: 1842 1455 627 451 329 325 272 217 BanII G_rGCy'C Cuts at: 1391 2039 2187 2260 2837 1391 Size: 648 148 73 577 4072 Fragments arranged by size: 4072 648 577 148 73 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2698 928 Size: 971 799 3748 Fragments arranged by size: 3748 971 799 BbvCI CC'TCA_GC Cuts at: 2740 2740 Size: 5518 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 2499 2533 3709 3743 1903 Size: 34 562 34 1176 34 3678 Fragments arranged by size: 3678 1176 562 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3410 4620 3410 Size: 1210 4308 BclI T'GATC_A Cuts at: 1548 1548 Size: 5518 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4129 136 Size: 107 122 71 631 605 2457 1525 Fragments arranged by size: 2457 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5513 5513 Size: 5518 BlpI GC'TnA_GC Cuts at: 2935 2935 Size: 5518 Bme1580I G_kGCm'C Cuts at: 1790 2187 2260 3579 4735 1790 Size: 397 73 1319 1156 2573 Fragments arranged by size: 2573 1319 1156 397 73 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5518 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3249 4207 442 Size: 416 53 83 399 24 1832 958 1753 Fragments arranged by size: 1832 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5518 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2256 4178 1239 Size: 1017 1922 2579 Fragments arranged by size: 2579 1922 1017 Bpu10I CC'TnA_GC Cuts at: 2727 2740 2727 Size: 13 5505 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3643 4508 4806 3643 Size: 865 298 4355 Fragments arranged by size: 4355 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2766 4181 882 Size: 617 1267 1415 2219 Fragments arranged by size: 2219 1415 1267 617 BsaAI yAC'GTr Cuts at: 493 1204 3309 493 Size: 711 2105 2702 Fragments arranged by size: 2702 2105 711 BsaBI GATnn'nnATC Cuts at: 5512 5512 Size: 5518 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3325 3707 4342 275 Size: 53 83 186 936 1792 382 635 1451 Fragments arranged by size: 1792 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2376 3951 4349 4623 4770 5181 2376 Size: 1575 398 274 147 411 2713 Fragments arranged by size: 2713 1575 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2141 2171 1178 Size: 30 165 30 738 30 4525 Fragments arranged by size: 4525 738 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2333 2474 2798 1186 Size: 1147 141 324 3906 Fragments arranged by size: 3906 1147 324 141 BseYI C'CCAG_C Cuts at: 2097 2186 2696 2717 4721 5217 2097 Size: 89 510 21 2004 496 2398 Fragments arranged by size: 2398 2004 510 496 89 21 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2389 2633 1163 Size: 573 653 244 4048 Fragments arranged by size: 4048 653 573 244 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2082 2968 3729 4757 1540 Size: 275 186 81 886 761 1028 2301 Fragments arranged by size: 2301 1028 886 761 275 186 81 BsiHKAI G_wGCw'C Cuts at: 2039 3579 3664 4735 2039 Size: 1540 85 1071 2822 Fragments arranged by size: 2822 1540 1071 85 BsmI GAATG_Cn' Cuts at: 3029 3122 3029 Size: 93 5425 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2039 2187 2260 2837 3579 3664 4735 Size: 399 249 148 73 577 742 85 1071 Cuts at: 4735 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 577 399 249 148 85 73 BspEI T'CCGG_A Cuts at: 5181 5181 Size: 5518 BspHI T'CATG_A Cuts at: 2664 3407 5137 2664 Size: 743 1730 3045 Fragments arranged by size: 3045 1730 743 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2873 844 Size: 2029 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2344 3405 1394 Size: 429 521 1061 3507 Fragments arranged by size: 3507 1061 521 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4013 4187 65 Size: 1183 2765 174 1396 Fragments arranged by size: 2765 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4162 4349 1700 Size: 110 2352 187 2869 Fragments arranged by size: 2869 2352 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5518 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5518 BssSI C'ACGA_G Cuts at: 3578 4590 3578 Size: 1012 4506 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5518 BstBI TT'CG_AA Cuts at: 4322 4322 Size: 5518 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5518 BstYI r'GATC_y Cuts at: 1972 2848 3215 3600 3617 5069 5155 5167 5513 Size: 876 367 385 17 1452 86 12 346 Cuts at: 5513 1972 Size: 1977 Fragments arranged by size: 1977 1452 876 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2640 2640 Size: 5518 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 4966 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2732 487 Size: 683 56 1506 3273 Fragments arranged by size: 3273 1506 683 56 BtsI GCAGTG_nn' Cuts at: 2162 2645 3034 3828 3848 2162 Size: 483 389 794 20 3832 Fragments arranged by size: 3832 794 483 389 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5518 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5483 DraI TTT'AAA Cuts at: 2822 2822 Size: 5518 DraIII CAC_nnn'GTG Cuts at: 2116 2116 Size: 5518 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4525 809 Size: 507 3209 1802 Fragments arranged by size: 3209 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2079 2240 2361 Size: 54 1425 50 275 18 249 161 121 Cuts at: 2361 2965 3854 5483 8 Size: 604 889 1629 43 Fragments arranged by size: 1629 1425 889 604 275 249 161 121 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2079 2965 1537 Size: 275 267 886 4090 Fragments arranged by size: 4090 886 275 267 EarI CTCTTCn'nnn_ Cuts at: 1353 2310 3448 1353 Size: 957 1138 3423 Fragments arranged by size: 3423 1138 957 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2423 4105 4479 4625 387 Size: 1064 138 834 1682 374 146 1280 Fragments arranged by size: 1682 1280 1064 834 374 146 138 EcoICRI GAG'CTC Cuts at: 2037 2037 Size: 5518 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2256 3581 4178 4965 5233 1239 Size: 393 624 1325 597 787 268 1524 Fragments arranged by size: 1524 1325 787 624 597 393 268 EcoO109I rG'GnC_Cy Cuts at: 2183 2257 2624 2183 Size: 74 367 5077 Fragments arranged by size: 5077 367 74 EcoRI G'AATT_C Cuts at: 2827 3205 2827 Size: 378 5140 FspI TGC'GCA Cuts at: 4024 4024 Size: 5518 HaeII r_GCGC'y Cuts at: 1678 2326 2485 4665 1678 Size: 648 159 2180 2531 Fragments arranged by size: 2531 2180 648 159 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2128 2160 2200 2232 2420 Size: 32 135 32 556 32 40 32 188 Cuts at: 2420 2452 2765 2797 4159 4191 4233 4265 1373 Size: 32 313 32 1362 32 42 32 2626 Fragments arranged by size: 2626 1362 556 313 188 135 42 40 32 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2862 3108 669 Size: 988 281 924 246 3079 Fragments arranged by size: 3079 988 924 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5518 HpaI GTT'AAC Cuts at: 3108 3108 Size: 5518 KpnI G_GTAC'C Cuts at: 2843 2843 Size: 5518 MfeI C'AATT_G Cuts at: 3117 3117 Size: 5518 MluI A'CGCG_T Cuts at: 5394 5394 Size: 5518 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2825 4632 4816 1305 Size: 1520 1807 184 2007 Fragments arranged by size: 2007 1807 1520 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3696 Fragments arranged by size: 3696 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2663 3476 3835 3994 518 Size: 648 1497 813 359 159 2042 Fragments arranged by size: 2042 1497 813 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2769 2934 3611 4759 5004 1606 Size: 1163 165 677 1148 245 2120 Fragments arranged by size: 2120 1163 1148 677 245 165 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4966 NdeI CA'TA_TG Cuts at: 387 387 Size: 5518 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5518 NotI GC'GGCC_GC Cuts at: 2965 2965 Size: 5518 NspI r_CATG'y Cuts at: 1132 1229 2876 4421 1132 Size: 97 1647 1545 2229 Fragments arranged by size: 2229 1647 1545 97 PasI CC'CwG_GG Cuts at: 1348 2260 2621 1348 Size: 912 361 4245 Fragments arranged by size: 4245 912 361 PciI A'CATG_T Cuts at: 4417 4417 Size: 5518 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5518 PfoI T'CCnGG_A Cuts at: 2039 2526 2039 Size: 487 5031 PmeI GTTT'AAAC Cuts at: 2822 2822 Size: 5518 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3587 3619 5100 5132 3587 Size: 32 1481 32 3973 Fragments arranged by size: 3973 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5518 PsiI TTA'TAA Cuts at: 3088 3088 Size: 5518 PspOMI G'GGCC_C Cuts at: 2183 2256 2183 Size: 73 5445 PstI C_TGCA'G Cuts at: 830 2157 2406 2448 2469 2870 830 Size: 1327 249 42 21 401 3478 Fragments arranged by size: 3478 1327 401 249 42 21 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5518 SacI G_AGCT'C Cuts at: 2039 2039 Size: 5518 SalI G'TCGA_C Cuts at: 1936 2860 1936 Size: 924 4594 SbfI CC_TGCA'GG Cuts at: 2406 2870 2406 Size: 464 5054 ScaI AGT'ACT Cuts at: 3766 5478 3766 Size: 1712 3806 SexAI A'CCwGG_T Cuts at: 2112 2112 Size: 5518 SfcI C'TryA_G Cuts at: 826 1045 2153 2402 2444 2465 2866 4001 4682 Size: 219 1108 249 42 21 401 1135 681 Cuts at: 4682 4873 826 Size: 191 1471 Fragments arranged by size: 1471 1135 1108 681 401 249 219 191 42 21 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5518 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5518 SmaI CCC'GGG Cuts at: 1872 2845 1872 Size: 973 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3622 4523 4785 820 Size: 197 926 1679 901 262 1553 Fragments arranged by size: 1679 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3309 493 Size: 2816 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5518 SphI G_CATG'C Cuts at: 1132 2876 1132 Size: 1744 3774 SspI AAT'ATT Cuts at: 5 52 3442 5 Size: 47 3390 2081 Fragments arranged by size: 3390 2081 47 StuI AGG'CCT Cuts at: 1517 2203 2290 1517 Size: 686 87 4745 Fragments arranged by size: 4745 686 87 StyI C'CwwG_G Cuts at: 513 1065 2538 2791 2957 513 Size: 552 1473 253 166 3074 Fragments arranged by size: 3074 1473 552 253 166 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2408 3545 3562 3715 3900 4345 325 Size: 1255 828 1137 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1137 828 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2220 3764 5476 Size: 274 80 33 51 1443 243 1544 1712 Cuts at: 5476 96 Size: 138 Fragments arranged by size: 1712 1544 1443 274 243 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2141 2173 5478 5510 2141 Size: 32 3305 32 2149 Fragments arranged by size: 3305 2149 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5518 XbaI T'CTAG_A Cuts at: 2854 2854 Size: 5518 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5518 XmaI C'CCGG_G Cuts at: 1870 2843 1870 Size: 973 4545 XmnI GAAnn'nnTTC Cuts at: 3647 3647 Size: 5518 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3326 276 Size: 53 83 186 936 1792 2468 Fragments arranged by size: 2468 1792 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PspOMI PstI PvuI SacI SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BfrBI BplI BsiWI BsmBI BstXI BstZ17I EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PpuMI PspXI PsrI PvuII RsrII SacII SanDI SapI SfiI SfoI SrfI SwaI XcmI