Result of FASTA (ccds) for pFN21AB7556
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7556, 271 aa
  1>>>pF1KB7556 271 - 271 aa - 271 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4817+/-0.000751; mu= 4.9743+/- 0.046
 mean_var=235.9003+/-47.443, 0's: 0 Z-trim(118.9): 30  B-trim: 468 in 1/52
 Lambda= 0.083505
 statistics sampled from 19937 (19969) to 19937 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.87), E-opt: 0.2 (0.613), width:  16
 Scan time:  2.810

The best scores are:                                      opt bits E(32554)
CCDS8121.1 FOSL1 gene_id:8061|Hs108|chr11          ( 271) 1878 237.6   7e-63
CCDS76436.1 FOSL1 gene_id:8061|Hs108|chr11         ( 169)  920 122.0 2.8e-28
CCDS73324.1 FOSL1 gene_id:8061|Hs108|chr11         ( 235)  915 121.6 5.3e-28
CCDS76437.1 FOSL1 gene_id:8061|Hs108|chr11         ( 135)  735 99.6 1.2e-21
CCDS1766.1 FOSL2 gene_id:2355|Hs108|chr2           ( 326)  487 70.1 2.2e-12
CCDS9841.1 FOS gene_id:2353|Hs108|chr14            ( 380)  468 67.9 1.2e-11


>>CCDS8121.1 FOSL1 gene_id:8061|Hs108|chr11               (271 aa)
 initn: 1878 init1: 1878 opt: 1878  Z-score: 1242.4  bits: 237.6 E(32554): 7e-63
Smith-Waterman score: 1878; 100.0% identity (100.0% similar) in 271 aa overlap (1-271:1-271)

               10        20        30        40        50        60
pF1KB7 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQISPEEEERRRVRRERNKLAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQISPEEEERRRVRRERNKLAAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 KCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GDTGSTSGTSSPPAPCRPVPCISLSPGPVLEPEALHTPTLMTTPSLTPFTPSLVFTYPST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GDTGSTSGTSSPPAPCRPVPCISLSPGPVLEPEALHTPTLMTTPSLTPFTPSLVFTYPST
              190       200       210       220       230       240

              250       260       270 
pF1KB7 PEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
       :::::::::::::::::::::::::::::::
CCDS81 PEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
              250       260       270 

>>CCDS76436.1 FOSL1 gene_id:8061|Hs108|chr11              (169 aa)
 initn: 920 init1: 920 opt: 920  Z-score: 621.2  bits: 122.0 E(32554): 2.8e-28
Smith-Waterman score: 941; 62.4% identity (62.4% similar) in 271 aa overlap (1-271:1-169)

               10        20        30        40        50        60
pF1KB7 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
       :::::::::::::::::::::::::::::::::                           
CCDS76 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQ---------------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KB7 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQISPEEEERRRVRRERNKLAAA
                                                                   
CCDS76 ------------------------------------------------------------
                                                                   

              130       140       150       160       170       180
pF1KB7 KCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKE
                      :::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ---------------ETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKE
                           40        50        60        70        

              190       200       210       220       230       240
pF1KB7 GDTGSTSGTSSPPAPCRPVPCISLSPGPVLEPEALHTPTLMTTPSLTPFTPSLVFTYPST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GDTGSTSGTSSPPAPCRPVPCISLSPGPVLEPEALHTPTLMTTPSLTPFTPSLVFTYPST
       80        90       100       110       120       130        

              250       260       270 
pF1KB7 PEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
       :::::::::::::::::::::::::::::::
CCDS76 PEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
      140       150       160         

>>CCDS73324.1 FOSL1 gene_id:8061|Hs108|chr11              (235 aa)
 initn: 915 init1: 915 opt: 915  Z-score: 616.2  bits: 121.6 E(32554): 5.3e-28
Smith-Waterman score: 1564; 86.7% identity (86.7% similar) in 271 aa overlap (1-271:1-235)

               10        20        30        40        50        60
pF1KB7 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQISPEEEERRRVRRERNKLAAA
       :::::::::::::::::::::::::::::::::::::::                     
CCDS73 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQ---------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KB7 KCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKE
                      :::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ---------------ETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGAKE
                    100       110       120       130       140    

              190       200       210       220       230       240
pF1KB7 GDTGSTSGTSSPPAPCRPVPCISLSPGPVLEPEALHTPTLMTTPSLTPFTPSLVFTYPST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GDTGSTSGTSSPPAPCRPVPCISLSPGPVLEPEALHTPTLMTTPSLTPFTPSLVFTYPST
          150       160       170       180       190       200    

              250       260       270 
pF1KB7 PEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
       :::::::::::::::::::::::::::::::
CCDS73 PEPCASAHRKSSSSSGDPSSDPLGSPTLLAL
          210       220       230     

>>CCDS76437.1 FOSL1 gene_id:8061|Hs108|chr11              (135 aa)
 initn: 732 init1: 732 opt: 735  Z-score: 502.0  bits: 99.6 E(32554): 1.2e-21
Smith-Waterman score: 735; 77.9% identity (83.6% similar) in 140 aa overlap (1-138:1-135)

               10        20        30        40        50        60
pF1KB7 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MFRDFGEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQISPEEEERRRVRRERNKLAAA
       ::::::::::::::::::::::::::::::::::::::: . .     ..: :.     :
CCDS76 PSSYPRPLTYPQYSPPQPRPGVIRALGPPPGVRRRPCEQPGGRGAPPSKARAEQ-----A
               70        80        90       100       110          

                130       140       150       160       170        
pF1KB7 KCRNRRK--ELTDFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPEGA
        : . ..  : :: : :  :                                        
CCDS76 GCGQVQEPEEGTDRLPAGGD                                        
         120       130                                             

>>CCDS1766.1 FOSL2 gene_id:2355|Hs108|chr2                (326 aa)
 initn: 546 init1: 413 opt: 487  Z-score: 335.7  bits: 70.1 E(32554): 2.2e-12
Smith-Waterman score: 746; 46.0% identity (65.2% similar) in 328 aa overlap (1-267:1-322)

               10         20        30                   40        
pF1KB7 MFRDFGEPGP-SSGNGGGYGGPAQPPAAAQAA--QQKFHL---------VPSINTMSGSQ
       :..:.  ::  .... :. :.::.  . ....  ::::..         .:.::... ::
CCDS17 MYQDY--PGNFDTSSRGSSGSPAHAESYSSGGGGQQKFRVDMPGSGSAFIPTINAITTSQ
                 10        20        30        40        50        

       50        60        70                   80        90       
pF1KB7 ELQWMVQPHFLGPSSYPRPLTYPQYSP-PQ----------PRPGVIRALGPPPGVRRRPC
       .:::::::  .   : : : ..: ::: :           ::::::...:   : :::  
CCDS17 DLQWMVQPTVITSMSNPYPRSHP-YSPLPGLASVPGHMALPRPGVIKTIGTTVGRRRRD-
       60        70        80         90       100       110       

       100       110       120       130       140       150       
pF1KB7 EQISPEEEERRRVRRERNKLAAAKCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQ
       ::.::::::.::.::::::::::::::::.:::. :::::..::.::::::.:: ::::.
CCDS17 EQLSPEEEEKRRIRRERNKLAAAKCRNRRRELTEKLQAETEELEEEKSGLQKEIAELQKE
        120       130       140       150       160       170      

       160       170                        180                    
pF1KB7 KERLELVLEAHRPICKI-PE----------------GAKEG-----------DTGSTSGT
       ::.::..: :: :.::: ::                :.. :           :. :.:..
CCDS17 KEKLEFMLVAHGPVCKISPEERRSPPAPGLQPMRSGGGSVGAVVVKQEPLEEDSPSSSSA
        180       190       200       210       220       230      

     190       200       210       220        230            240   
pF1KB7 SSPPAPCRPVPCISLSPGPVLEPEALHTPTLMT-TPSLTPFTPSLVFTYPS-----TP--
       .   :    .  ::.. :   : : :::: ..: ::..:: : .:::::::     .:  
CCDS17 GLDKAQRSVIKPISIAGGFYGE-EPLHTPIVVTSTPAVTPGTSNLVFTYPSVLEQESPAS
        240       250        260       270       280       290     

               250       260       270 
pF1KB7 --EPCASAHRKSSSSSGDPSSDPLGSPTLLAL
         : :..:::.:::: :: ::: :.:::    
CCDS17 PSESCSKAHRRSSSS-GDQSSDSLNSPTLLAL
         300       310        320      

>>CCDS9841.1 FOS gene_id:2353|Hs108|chr14                 (380 aa)
 initn: 677 init1: 422 opt: 468  Z-score: 322.5  bits: 67.9 E(32554): 1.2e-11
Smith-Waterman score: 536; 42.2% identity (65.8% similar) in 237 aa overlap (36-251:59-288)

          10        20        30        40        50        60     
pF1KB7 GEPGPSSGNGGGYGGPAQPPAAAQAAQQKFHLVPSINTMSGSQELQWMVQPHFLG---PS
                                     ...:.....: : .:::.::: ...   ::
CCDS98 YYHSPADSFSSMGSPVNAQDFCTDLAVSSANFIPTVTAISTSPDLQWLVQPALVSSVAPS
       30        40        50        60        70        80        

               70         80          90        100       110      
pF1KB7 SY--PRPLTYPQYSP-PQPRPGVIRAL--GPPPGVRRR-PCEQISPEEEERRRVRRERNK
       .   :.:.  :  :     : ::....  :   .. ::   ::.::::::.::.::::::
CCDS98 QTRAPHPFGVPAPSAGAYSRAGVVKTMTGGRAQSIGRRGKVEQLSPEEEEKRRIRRERNK
       90       100       110       120       130       140        

        120       130       140       150       160       170      
pF1KB7 LAAAKCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQKQKERLELVLEAHRPICKIPE
       .:::::::::.:::: ::::::.::::::.:: :: .: :.::.::..: :::: ::::.
CCDS98 MAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAHRPACKIPD
      150       160       170       180       190       200        

           180       190              200        210        220    
pF1KB7 G---AKEGDTGSTSGTSSPPAPCRP-------VPCISLS-PGPVLEP-EALHTPTLMTTP
            .: ...: . :.. :    :       .: ..   : : .:: ... .  : : :
CCDS98 DLGFPEEMSVASLDLTGGLPEVATPESEEAFTLPLLNDPEPKPSVEPVKSISSMELKTEP
      210       220       230       240       250       260        

          230       240       250       260       270              
pF1KB7 SLTPFTPSLVFTYPSTPEPCASAHRKSSSSSGDPSSDPLGSPTLLAL             
           :     : .:.. .: .:   .:                                 
CCDS98 ----FDD---FLFPASSRPSGSETARSVPDMDLSGSFYAADWEPLHSGSLGMGPMATELE
          270          280       290       300       310       320 




271 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:40:47 2016 done: Fri Nov  4 08:40:48 2016
 Total Scan time:  2.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com