Result of FASTA (omim) for
pFN21AB7542
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7542, 258 aa
1>>>pF1KB7542 258 - 258 aa - 258 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6873+/-0.0004; mu= 13.1963+/- 0.025
mean_var=76.7341+/-15.273, 0's: 0 Z-trim(112.2): 37 B-trim: 0 in 0/50
Lambda= 0.146413
statistics sampled from 21029 (21041) to 21029 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.247), width: 16
Scan time: 6.660
The best scores are: opt bits E(85289)
NP_009172 (OMIM: 610904) vacuolar-sorting protein ( 258) 1684 365.1 6.9e-101
NP_001304121 (OMIM: 610904) vacuolar-sorting prote ( 257) 1666 361.3 9.6e-100
NP_001304122 (OMIM: 610904) vacuolar-sorting prote ( 241) 1487 323.5 2.2e-88
XP_016879564 (OMIM: 610904) PREDICTED: vacuolar-so ( 154) 914 202.4 4.1e-52
NP_001304123 (OMIM: 610904) vacuolar-sorting prote ( 154) 914 202.4 4.1e-52
>>NP_009172 (OMIM: 610904) vacuolar-sorting protein SNF8 (258 aa)
initn: 1684 init1: 1684 opt: 1684 Z-score: 1932.2 bits: 365.1 E(85289): 6.9e-101
Smith-Waterman score: 1684; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)
10 20 30 40 50 60
pF1KB7 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
190 200 210 220 230 240
250
pF1KB7 TDLYSQEITAEEAREALP
::::::::::::::::::
NP_009 TDLYSQEITAEEAREALP
250
>>NP_001304121 (OMIM: 610904) vacuolar-sorting protein S (257 aa)
initn: 1224 init1: 1224 opt: 1666 Z-score: 1911.7 bits: 361.3 E(85289): 9.6e-100
Smith-Waterman score: 1666; 99.6% identity (99.6% similar) in 258 aa overlap (1-258:1-257)
10 20 30 40 50 60
pF1KB7 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
:::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVLQLAE-NGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
190 200 210 220 230
250
pF1KB7 TDLYSQEITAEEAREALP
::::::::::::::::::
NP_001 TDLYSQEITAEEAREALP
240 250
>>NP_001304122 (OMIM: 610904) vacuolar-sorting protein S (241 aa)
initn: 1487 init1: 1487 opt: 1487 Z-score: 1707.8 bits: 323.5 E(85289): 2.2e-88
Smith-Waterman score: 1536; 93.4% identity (93.4% similar) in 258 aa overlap (1-258:1-241)
10 20 30 40 50 60
pF1KB7 MHRRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRK
:::::::::::::::::: :::::::::::::::::::::::::
NP_001 MHRRGVGAGAIAKKKLAE-----------------MSKQLDMFKTNLEEFASKHKQEIRK
10 20 30 40
70 80 90 100 110 120
pF1KB7 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLIT
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDH
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB7 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALF
170 180 190 200 210 220
250
pF1KB7 TDLYSQEITAEEAREALP
::::::::::::::::::
NP_001 TDLYSQEITAEEAREALP
230 240
>>XP_016879564 (OMIM: 610904) PREDICTED: vacuolar-sortin (154 aa)
initn: 914 init1: 914 opt: 914 Z-score: 1056.5 bits: 202.4 E(85289): 4.1e-52
Smith-Waterman score: 914; 100.0% identity (100.0% similar) in 142 aa overlap (117-258:13-154)
90 100 110 120 130 140
pF1KB7 WSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIR
::::::::::::::::::::::::::::::
XP_016 MQLNPWQVSMAKGLITLEELHQQVLKGRGKFAQDVSQDDLIR
10 20 30 40
150 160 170 180 190 200
pF1KB7 AIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWET
50 60 70 80 90 100
210 220 230 240 250
pF1KB7 ERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP
110 120 130 140 150
>>NP_001304123 (OMIM: 610904) vacuolar-sorting protein S (154 aa)
initn: 914 init1: 914 opt: 914 Z-score: 1056.5 bits: 202.4 E(85289): 4.1e-52
Smith-Waterman score: 914; 100.0% identity (100.0% similar) in 142 aa overlap (117-258:13-154)
90 100 110 120 130 140
pF1KB7 WSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIR
::::::::::::::::::::::::::::::
NP_001 MQLNPWQVSMAKGLITLEELHQQVLKGRGKFAQDVSQDDLIR
10 20 30 40
150 160 170 180 190 200
pF1KB7 AIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWET
50 60 70 80 90 100
210 220 230 240 250
pF1KB7 ERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERARQVLEHLLKEGLAWLDLQAPGEAHYWLPALFTDLYSQEITAEEAREALP
110 120 130 140 150
258 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:34:59 2016 done: Fri Nov 4 08:35:00 2016
Total Scan time: 6.660 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]