Result of FASTA (omim) for pFN21AB7540
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7540, 258 aa
  1>>>pF1KB7540 258 - 258 aa - 258 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4417+/-0.000281; mu= 8.5136+/- 0.018
 mean_var=191.0030+/-38.586, 0's: 0 Z-trim(125.1): 228  B-trim: 2678 in 2/57
 Lambda= 0.092801
 statistics sampled from 47862 (48165) to 47862 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.565), width:  16
 Scan time:  8.390

The best scores are:                                      opt bits E(85289)
NP_055283 (OMIM: 607158) homeobox protein VENTX [H ( 258) 1792 250.9 1.6e-66
XP_016871562 (OMIM: 607158) PREDICTED: homeobox pr ( 189) 1274 181.4   1e-45
NP_001106175 (OMIM: 604294,614402) ventral anterio ( 334)  282 48.9 1.4e-05
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299)  263 46.3 7.7e-05
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358)  263 46.4 8.7e-05
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358)  263 46.4 8.7e-05
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430)  263 46.4 9.9e-05
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  263 46.4 9.9e-05
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431)  263 46.4 9.9e-05
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  263 46.4 9.9e-05
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  263 46.4 9.9e-05
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  263 46.4 9.9e-05
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431)  263 46.4 9.9e-05
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488)  263 46.5 0.00011
NP_036608 (OMIM: 604295) ventral anterior homeobox ( 290)  258 45.6 0.00012
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  263 46.6 0.00012
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  263 46.6 0.00012
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  263 46.6 0.00012
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  263 46.6 0.00012
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  263 46.6 0.00012
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  263 46.6 0.00012
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  263 46.6 0.00012
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578)  263 46.6 0.00012
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301)  255 45.2 0.00016
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346)  254 45.1  0.0002
NP_001035091 (OMIM: 214300,600147) homeobox protei ( 139)  245 43.5 0.00024
NP_004518 (OMIM: 214300,600147) homeobox protein M ( 254)  248 44.2 0.00028
NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324)  247 44.2 0.00036
NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159)  240 42.9 0.00042
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  247 44.3 0.00044
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  247 44.3 0.00044
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  247 44.3 0.00044
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  247 44.3 0.00044
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  247 44.3 0.00044
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443)  247 44.3 0.00044
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443)  247 44.3 0.00044
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304)  240 43.2 0.00066
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348)  241 43.4 0.00066
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356)  241 43.4 0.00067
NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1  ( 234)  237 42.7 0.00072
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273)  236 42.6 0.00088
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273)  236 42.6 0.00088
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255)  235 42.5 0.00092
NP_002720 (OMIM: 604420) hematopoietically-express ( 270)  232 42.1  0.0013
NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327)  233 42.3  0.0013
NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapie ( 264)  231 41.9  0.0014
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  234 42.6  0.0015
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  234 42.6  0.0015
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  234 42.6  0.0015
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432)  234 42.6  0.0015


>>NP_055283 (OMIM: 607158) homeobox protein VENTX [Homo   (258 aa)
 initn: 1792 init1: 1792 opt: 1792  Z-score: 1315.0  bits: 250.9 E(85289): 1.6e-66
Smith-Waterman score: 1792; 99.6% identity (99.6% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB7 MRLSSSPPRGPQQLSSFGSVDWLSQSSCSGPTHTPRPADFSPGSLPGPGQTSGAREPPQA
       ::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::
NP_055 MRLSSSPPRGPQQLSSFGSVDWLSQSSCSGPTHTPRPADFSLGSLPGPGQTSGAREPPQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 VSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHAPPAFYSTSSGLANGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPPTPGRPSLGPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPPTPGRPSLGPA
              190       200       210       220       230       240

              250        
pF1KB7 LSTGPRGLCAMPQTGDAF
       ::::::::::::::::::
NP_055 LSTGPRGLCAMPQTGDAF
              250        

>>XP_016871562 (OMIM: 607158) PREDICTED: homeobox protei  (189 aa)
 initn: 1262 init1: 1262 opt: 1274  Z-score: 941.9  bits: 181.4 E(85289): 1e-45
Smith-Waterman score: 1274; 96.3% identity (98.4% similar) in 189 aa overlap (70-258:3-189)

      40        50        60        70        80        90         
pF1KB7 FSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFT
                                     :..: :  .:.:::::::::::::::::::
XP_016                             MLSQMPLP--SMSGLSKEPNTLRAPRVRTAFT
                                             10        20        30

     100       110       120       130       140       150         
pF1KB7 MEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPF
               40        50        60        70        80        90

     160       170       180       190       200       210         
pF1KB7 SGSLHAPPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGSLHAPPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGAS
              100       110       120       130       140       150

     220       230       240       250        
pF1KB7 CCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF
       :::::::::::::::::::::::::::::::::::::::
XP_016 CCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF
              160       170       180         

>>NP_001106175 (OMIM: 604294,614402) ventral anterior ho  (334 aa)
 initn: 222 init1: 196 opt: 282  Z-score: 221.1  bits: 48.9 E(85289): 1.4e-05
Smith-Waterman score: 287; 33.6% identity (55.9% similar) in 229 aa overlap (50-258:64-272)

      20        30        40        50          60         70      
pF1KB7 VDWLSQSSCSGPTHTPRPADFSPGSLPGPGQTSGAREPP--QAVSIKEAAGS-SNLPAPE
                                     ....: .:   . . ...: ::  ..  :.
NP_001 GAEGNLPAAFLKEPQGAFSASGAAEDCNKSKSNSAADPDYCRRILVRDAKGSIREIILPK
            40        50        60        70        80        90   

         80        90       100       110       120       130      
pF1KB7 RTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIK
           ::. .    :  :.::.:: ::.  ::  ::. ::.   :: .:::...:::.:.:
NP_001 ----GLDLD----RPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTELARQLNLSETQVK
                   100       110       120       130       140     

        140        150       160                     170       180 
pF1KB7 TWFQNRRMKHKR-QMQDPQLHSPFS--------------GSLHAPPAFYSTSSGLANGLQ
       .:::::: :.:. : .: .:.:  :              : : .::.. .     :.:  
NP_001 VWFQNRRTKQKKDQGKDSELRSVVSETAATCSVLRLLEQGRLLSPPGLPALLPPCATGAL
         150       160       170       180       190       200     

             190       200       210       220       230        240
pF1KB7 LLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPLASHPPT-PGRPSLGPA
            . : ::.   :  :.  :  ..:  : :. : .  ..:   :::.  : :. :::
NP_001 ----GSALRGPSLPALGAGAAAG--SAAAAAAAAPGPAGAASP---HPPAVGGAPGPGPA
             210       220         230       240          250      

              250                                                  
pF1KB7 LSTGPRGLCA-MPQTGDAF                                         
          :: :: :  : .: ..                                         
NP_001 ---GPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLAGNLQELSARYLSS
           260       270       280       290       300       310   

>>NP_001317252 (OMIM: 142966) homeobox protein Hox-B3 is  (299 aa)
 initn: 209 init1: 166 opt: 263  Z-score: 207.9  bits: 46.3 E(85289): 7.7e-05
Smith-Waterman score: 263; 32.2% identity (57.5% similar) in 174 aa overlap (81-252:46-212)

               60        70        80        90       100       110
pF1KB7 TSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRAPRVRTAFTMEQVRTLEGVF
                                     : .. :..  . :.:::.:  :.  ::  :
NP_001 GTAEGCGGGGGGGGGGGSGGSGGGGGGGGGGDKSPPGSAASKRARTAYTSAQLVELEKEF
          20        30        40        50        60        70     

              120       130       140       150       160          
pF1KB7 QHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQDPQLHSPFSGSLHA--PPA
       . ..::   .: ..:  ..::: ::: ::::::::.:....   : :  .:   :  :: 
NP_001 HFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQ
          80        90       100       110       120       130     

      170       180       190       200       210       220        
pF1KB7 FYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVAQEALASAGASCCGQPLASH
        .....:. :.:. . :     .: :.     . ..: .  :  : .     :: :  ..
NP_001 PMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNYQPPLKG-----CGAP-QKY
         140       150       160       170       180               

      230       240       250                                      
pF1KB7 PPTPGRPSLGPALSTGPRGLCAMPQTGDAF                              
       ::::. :   : .  .  :  . :                                    
NP_001 PPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADPLPPPAGPSLYGLNHLSHHP
     190        200       210       220       230       240        

>>NP_001317251 (OMIM: 142966) homeobox protein Hox-B3 is  (358 aa)
 initn: 236 init1: 166 opt: 263  Z-score: 206.9  bits: 46.4 E(85289): 8.7e-05
Smith-Waterman score: 282; 28.5% identity (54.5% similar) in 253 aa overlap (5-252:39-271)

                                          10          20        30 
pF1KB7                           MRLSSSPPR-GPQQLSSFGS--VDWLSQSSCSGP
                                     :.::. ::   :.. .    :...:     
NP_001 PLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESR----
       10        20        30        40        50        60        

              40        50        60        70        80        90 
pF1KB7 THTPRPADFSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRA
        .: .  . :::.  : :  .:.     . .   ..:...        .: .. :..  .
NP_001 -QTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGG--------GGDKSPPGSAAS
            70        80        90       100               110     

             100       110       120       130       140       150 
pF1KB7 PRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQ
        :.:::.:  :.  ::  :. ..::   .: ..:  ..::: ::: ::::::::.:....
NP_001 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK
         120       130       140       150       160       170     

             160         170       180       190       200         
pF1KB7 DPQLHSPFSGSLHA--PPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVA
          : :  .:   :  ::  .....:. :.:. . :     .: :.     . ..: .  
NP_001 AKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNY
         180       190       200       210       220       230     

     210       220       230       240       250                   
pF1KB7 QEALASAGASCCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF           
       :  : .     :: :  ..::::. :   : .  .  :  . :                 
NP_001 QPPLKG-----CGAP-QKYPPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADP
         240             250        260       270       280        

NP_001 LPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGR
      290       300       310       320       330       340        

>>XP_011523028 (OMIM: 142966) PREDICTED: homeobox protei  (358 aa)
 initn: 236 init1: 166 opt: 263  Z-score: 206.9  bits: 46.4 E(85289): 8.7e-05
Smith-Waterman score: 282; 28.5% identity (54.5% similar) in 253 aa overlap (5-252:39-271)

                                          10          20        30 
pF1KB7                           MRLSSSPPR-GPQQLSSFGS--VDWLSQSSCSGP
                                     :.::. ::   :.. .    :...:     
XP_011 PLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESR----
       10        20        30        40        50        60        

              40        50        60        70        80        90 
pF1KB7 THTPRPADFSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRA
        .: .  . :::.  : :  .:.     . .   ..:...        .: .. :..  .
XP_011 -QTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGG--------GGDKSPPGSAAS
            70        80        90       100               110     

             100       110       120       130       140       150 
pF1KB7 PRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQ
        :.:::.:  :.  ::  :. ..::   .: ..:  ..::: ::: ::::::::.:....
XP_011 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK
         120       130       140       150       160       170     

             160         170       180       190       200         
pF1KB7 DPQLHSPFSGSLHA--PPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVA
          : :  .:   :  ::  .....:. :.:. . :     .: :.     . ..: .  
XP_011 AKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNY
         180       190       200       210       220       230     

     210       220       230       240       250                   
pF1KB7 QEALASAGASCCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF           
       :  : .     :: :  ..::::. :   : .  .  :  . :                 
XP_011 QPPLKG-----CGAP-QKYPPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADP
         240             250        260       270       280        

XP_011 LPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGR
      290       300       310       320       330       340        

>>XP_011523023 (OMIM: 142966) PREDICTED: homeobox protei  (430 aa)
 initn: 236 init1: 166 opt: 263  Z-score: 205.9  bits: 46.4 E(85289): 9.9e-05
Smith-Waterman score: 274; 28.5% identity (54.2% similar) in 253 aa overlap (5-252:112-343)

                                          10          20        30 
pF1KB7                           MRLSSSPPR-GPQQLSSFGS--VDWLSQSSCSGP
                                     :.::. ::   :.. .    :...:     
XP_011 PLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESR----
              90       100       110       120       130           

              40        50        60        70        80        90 
pF1KB7 THTPRPADFSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRA
        .: .  . :::.    :  .:.    .. :   ..:...         : .. :..  .
XP_011 -QTSKLKNNSPGTEGCGGGGGGGGGGGSGGSGGGGGGGGG---------GDKSPPGSAAS
        140       150       160       170                180       

             100       110       120       130       140       150 
pF1KB7 PRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQ
        :.:::.:  :.  ::  :. ..::   .: ..:  ..::: ::: ::::::::.:....
XP_011 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK
       190       200       210       220       230       240       

             160         170       180       190       200         
pF1KB7 DPQLHSPFSGSLHA--PPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVA
          : :  .:   :  ::  .....:. :.:. . :     .: :.     . ..: .  
XP_011 AKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNY
       250       260       270       280       290       300       

     210       220       230       240       250                   
pF1KB7 QEALASAGASCCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF           
       :  : .     :: :  ..::::. :   : .  .  :  . :                 
XP_011 QPPLKG-----CGAP-QKYPPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADP
       310             320        330       340       350       360

XP_011 LPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGR
              370       380       390       400       410       420

>>XP_005257334 (OMIM: 142966) PREDICTED: homeobox protei  (431 aa)
 initn: 236 init1: 166 opt: 263  Z-score: 205.9  bits: 46.4 E(85289): 9.9e-05
Smith-Waterman score: 282; 28.5% identity (54.5% similar) in 253 aa overlap (5-252:112-344)

                                          10          20        30 
pF1KB7                           MRLSSSPPR-GPQQLSSFGS--VDWLSQSSCSGP
                                     :.::. ::   :.. .    :...:     
XP_005 PLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESR----
              90       100       110       120       130           

              40        50        60        70        80        90 
pF1KB7 THTPRPADFSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRA
        .: .  . :::.  : :  .:.     . .   ..:...        .: .. :..  .
XP_005 -QTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGG--------GGDKSPPGSAAS
        140       150       160       170               180        

             100       110       120       130       140       150 
pF1KB7 PRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQ
        :.:::.:  :.  ::  :. ..::   .: ..:  ..::: ::: ::::::::.:....
XP_005 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK
      190       200       210       220       230       240        

             160         170       180       190       200         
pF1KB7 DPQLHSPFSGSLHA--PPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVA
          : :  .:   :  ::  .....:. :.:. . :     .: :.     . ..: .  
XP_005 AKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNY
      250       260       270       280       290       300        

     210       220       230       240       250                   
pF1KB7 QEALASAGASCCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF           
       :  : .     :: :  ..::::. :   : .  .  :  . :                 
XP_005 QPPLKG-----CGAP-QKYPPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADP
      310             320        330       340       350       360 

XP_005 LPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGR
             370       380       390       400       410       420 

>>NP_002137 (OMIM: 142966) homeobox protein Hox-B3 isofo  (431 aa)
 initn: 236 init1: 166 opt: 263  Z-score: 205.9  bits: 46.4 E(85289): 9.9e-05
Smith-Waterman score: 282; 28.5% identity (54.5% similar) in 253 aa overlap (5-252:112-344)

                                          10          20        30 
pF1KB7                           MRLSSSPPR-GPQQLSSFGS--VDWLSQSSCSGP
                                     :.::. ::   :.. .    :...:     
NP_002 PLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESR----
              90       100       110       120       130           

              40        50        60        70        80        90 
pF1KB7 THTPRPADFSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRA
        .: .  . :::.  : :  .:.     . .   ..:...        .: .. :..  .
NP_002 -QTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGG--------GGDKSPPGSAAS
        140       150       160       170               180        

             100       110       120       130       140       150 
pF1KB7 PRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQ
        :.:::.:  :.  ::  :. ..::   .: ..:  ..::: ::: ::::::::.:....
NP_002 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK
      190       200       210       220       230       240        

             160         170       180       190       200         
pF1KB7 DPQLHSPFSGSLHA--PPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVA
          : :  .:   :  ::  .....:. :.:. . :     .: :.     . ..: .  
NP_002 AKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNY
      250       260       270       280       290       300        

     210       220       230       240       250                   
pF1KB7 QEALASAGASCCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF           
       :  : .     :: :  ..::::. :   : .  .  :  . :                 
NP_002 QPPLKG-----CGAP-QKYPPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADP
      310             320        330       340       350       360 

NP_002 LPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGR
             370       380       390       400       410       420 

>>XP_011523022 (OMIM: 142966) PREDICTED: homeobox protei  (431 aa)
 initn: 236 init1: 166 opt: 263  Z-score: 205.9  bits: 46.4 E(85289): 9.9e-05
Smith-Waterman score: 282; 28.5% identity (54.5% similar) in 253 aa overlap (5-252:112-344)

                                          10          20        30 
pF1KB7                           MRLSSSPPR-GPQQLSSFGS--VDWLSQSSCSGP
                                     :.::. ::   :.. .    :...:     
XP_011 PLSAPPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESR----
              90       100       110       120       130           

              40        50        60        70        80        90 
pF1KB7 THTPRPADFSPGSLPGPGQTSGAREPPQAVSIKEAAGSSNLPAPERTMAGLSKEPNTLRA
        .: .  . :::.  : :  .:.     . .   ..:...        .: .. :..  .
XP_011 -QTSKLKNNSPGTAEGCGGGGGGGGGGGSGGSGGGGGGGG--------GGDKSPPGSAAS
        140       150       160       170               180        

             100       110       120       130       140       150 
pF1KB7 PRVRTAFTMEQVRTLEGVFQHHQYLSPLERKRLAREMQLSEVQIKTWFQNRRMKHKRQMQ
        :.:::.:  :.  ::  :. ..::   .: ..:  ..::: ::: ::::::::.:....
XP_011 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK
      190       200       210       220       230       240        

             160         170       180       190       200         
pF1KB7 DPQLHSPFSGSLHA--PPAFYSTSSGLANGLQLLCPWAPLSGPQALMLPPGSFWGLCQVA
          : :  .:   :  ::  .....:. :.:. . :     .: :.     . ..: .  
XP_011 AKGLASSSGGPSPAGSPPQPMQSTAGFMNALHSMTPSYESPSPPAFGKAHQNAYALPSNY
      250       260       270       280       290       300        

     210       220       230       240       250                   
pF1KB7 QEALASAGASCCGQPLASHPPTPGRPSLGPALSTGPRGLCAMPQTGDAF           
       :  : .     :: :  ..::::. :   : .  .  :  . :                 
XP_011 QPPLKG-----CGAP-QKYPPTPA-PEYEPHVLQANGGAYGTPTMQGSPVYVGGGGYADP
      310             320        330       340       350       360 

XP_011 LPPPAGPSLYGLNHLSHHPSGNLDYNGAPPMAPSQHHGPCEPHPTYTDLSSHHAPPPQGR
             370       380       390       400       410       420 




258 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:33:16 2016 done: Fri Nov  4 08:33:17 2016
 Total Scan time:  8.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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