FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7525, 150 aa
  1>>>pF1KB7525 150 - 150 aa - 150 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1832+/-0.000805; mu= 11.4050+/- 0.048
 mean_var=48.9573+/- 9.806, 0's: 0 Z-trim(105.2): 10  B-trim: 0 in 0/52
 Lambda= 0.183301
 statistics sampled from 8271 (8276) to 8271 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.254), width:  16
 Scan time:  1.670

The best scores are:                                      opt bits E(32554)
CCDS3264.1 POLR2H gene_id:5437|Hs108|chr3          ( 150)  987 268.4 1.2e-72
CCDS63861.1 POLR2H gene_id:5437|Hs108|chr3         ( 114)  742 203.6 2.9e-53
CCDS63859.1 POLR2H gene_id:5437|Hs108|chr3         ( 175)  742 203.6 4.3e-53
CCDS63860.1 POLR2H gene_id:5437|Hs108|chr3         ( 122)  582 161.3 1.7e-40
CCDS63862.1 POLR2H gene_id:5437|Hs108|chr3         (  86)  337 96.5 3.9e-21


>>CCDS3264.1 POLR2H gene_id:5437|Hs108|chr3               (150 aa)
 initn: 987 init1: 987 opt: 987  Z-score: 1417.9  bits: 268.4 E(32554): 1.2e-72
Smith-Waterman score: 987; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150)

               10        20        30        40        50        60
pF1KB7 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
               70        80        90       100       110       120

              130       140       150
pF1KB7 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
       ::::::::::::::::::::::::::::::
CCDS32 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
              130       140       150

>>CCDS63861.1 POLR2H gene_id:5437|Hs108|chr3              (114 aa)
 initn: 742 init1: 742 opt: 742  Z-score: 1069.8  bits: 203.6 E(32554): 2.9e-53
Smith-Waterman score: 742; 100.0% identity (100.0% similar) in 114 aa overlap (37-150:1-114)

         10        20        30        40        50        60      
pF1KB7 EDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYE
                                     ::::::::::::::::::::::::::::::
CCDS63                               MDLILDVNIQIYPVDLGDKFRLVIASTLYE
                                             10        20        30

         70        80        90       100       110       120      
pF1KB7 DGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQ
               40        50        60        70        80        90

        130       140       150
pF1KB7 GDANNLHGFEVDSRVYLLMKKLAF
       ::::::::::::::::::::::::
CCDS63 GDANNLHGFEVDSRVYLLMKKLAF
              100       110    

>>CCDS63859.1 POLR2H gene_id:5437|Hs108|chr3              (175 aa)
 initn: 755 init1: 742 opt: 742  Z-score: 1066.6  bits: 203.6 E(32554): 4.3e-53
Smith-Waterman score: 742; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KB7 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::        
CCDS63 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLLRLRAAEW
               70        80        90       100       110       120

              130       140       150                         
pF1KB7 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF                         
                                                              
CCDS63 QCSRITGWGLLFQLCVRVLWGPAHEAAGGCQQPAWIRGGLQSLSPDEEASLLNLA
              130       140       150       160       170     

>>CCDS63860.1 POLR2H gene_id:5437|Hs108|chr3              (122 aa)
 initn: 789 init1: 558 opt: 582  Z-score: 840.6  bits: 161.3 E(32554): 1.7e-40
Smith-Waterman score: 736; 80.7% identity (80.7% similar) in 150 aa overlap (1-150:1-122)

               10        20        30        40        50        60
pF1KB7 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MAGILFEDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ASTLYEDGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGG
       :::::::::::::::::::::::                             ::::::::
CCDS63 ASTLYEDGTLDDGEYNPTDDRPSS----------------------------SAYVSYGG
               70        80                                    90  

              130       140       150
pF1KB7 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
       ::::::::::::::::::::::::::::::
CCDS63 LLMRLQGDANNLHGFEVDSRVYLLMKKLAF
            100       110       120  

>>CCDS63862.1 POLR2H gene_id:5437|Hs108|chr3              (86 aa)
 initn: 544 init1: 313 opt: 337  Z-score: 493.0  bits: 96.5 E(32554): 3.9e-21
Smith-Waterman score: 491; 74.6% identity (74.6% similar) in 114 aa overlap (37-150:1-86)

         10        20        30        40        50        60      
pF1KB7 EDIFDVKDIDPEGKKFDRVSRLHCESESFKMDLILDVNIQIYPVDLGDKFRLVIASTLYE
                                     ::::::::::::::::::::::::::::::
CCDS63                               MDLILDVNIQIYPVDLGDKFRLVIASTLYE
                                             10        20        30

         70        80        90       100       110       120      
pF1KB7 DGTLDDGEYNPTDDRPSRADQFEYVMYGKVYRIEGDETSTEAATRLSAYVSYGGLLMRLQ
       :::::::::::::::::                             ::::::::::::::
CCDS63 DGTLDDGEYNPTDDRPSS----------------------------SAYVSYGGLLMRLQ
               40                                    50        60  

        130       140       150
pF1KB7 GDANNLHGFEVDSRVYLLMKKLAF
       ::::::::::::::::::::::::
CCDS63 GDANNLHGFEVDSRVYLLMKKLAF
             70        80      




150 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:26:29 2016 done: Fri Nov  4 08:26:29 2016
 Total Scan time:  1.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]