Result of FASTA (omim) for
pFN21AB7523
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7523, 144 aa
1>>>pF1KB7523 144 - 144 aa - 144 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1906+/-0.000287; mu= 12.9878+/- 0.018
mean_var=67.5009+/-13.382, 0's: 0 Z-trim(119.0): 7 B-trim: 281 in 1/52
Lambda= 0.156106
statistics sampled from 32545 (32552) to 32545 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.382), width: 16
Scan time: 4.760
The best scores are: opt bits E(85289)
XP_016868251 (OMIM: 603477) PREDICTED: protein BUD ( 144) 1036 241.1 4.5e-64
XP_005250731 (OMIM: 603477) PREDICTED: protein BUD ( 144) 1036 241.1 4.5e-64
NP_003901 (OMIM: 603477) protein BUD31 homolog [Ho ( 144) 1036 241.1 4.5e-64
XP_005250727 (OMIM: 603477) PREDICTED: protein BUD ( 145) 904 211.4 4e-55
XP_016868249 (OMIM: 603477) PREDICTED: protein BUD ( 145) 904 211.4 4e-55
XP_005250728 (OMIM: 603477) PREDICTED: protein BUD ( 145) 904 211.4 4e-55
XP_016868250 (OMIM: 603477) PREDICTED: protein BUD ( 145) 904 211.4 4e-55
>>XP_016868251 (OMIM: 603477) PREDICTED: protein BUD31 h (144 aa)
initn: 1036 init1: 1036 opt: 1036 Z-score: 1271.3 bits: 241.1 E(85289): 4.5e-64
Smith-Waterman score: 1036; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
70 80 90 100 110 120
130 140
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG
::::::::::::::::::::::::
XP_016 VPKSKLEVGRIIECTHCGCRGCSG
130 140
>>XP_005250731 (OMIM: 603477) PREDICTED: protein BUD31 h (144 aa)
initn: 1036 init1: 1036 opt: 1036 Z-score: 1271.3 bits: 241.1 E(85289): 4.5e-64
Smith-Waterman score: 1036; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
70 80 90 100 110 120
130 140
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG
::::::::::::::::::::::::
XP_005 VPKSKLEVGRIIECTHCGCRGCSG
130 140
>>NP_003901 (OMIM: 603477) protein BUD31 homolog [Homo s (144 aa)
initn: 1036 init1: 1036 opt: 1036 Z-score: 1271.3 bits: 241.1 E(85289): 4.5e-64
Smith-Waterman score: 1036; 100.0% identity (100.0% similar) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
70 80 90 100 110 120
130 140
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG
::::::::::::::::::::::::
NP_003 VPKSKLEVGRIIECTHCGCRGCSG
130 140
>>XP_005250727 (OMIM: 603477) PREDICTED: protein BUD31 h (145 aa)
initn: 902 init1: 902 opt: 904 Z-score: 1110.6 bits: 211.4 E(85289): 4e-55
Smith-Waterman score: 904; 93.5% identity (95.7% similar) in 139 aa overlap (1-139:1-137)
10 20 30 40 50 60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
70 80 90 100 110 120
130 140
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG
:::::::: .. :. :
XP_005 VPKSKLEV--VMSDTQAWCCFQLKILP
130 140
>>XP_016868249 (OMIM: 603477) PREDICTED: protein BUD31 h (145 aa)
initn: 902 init1: 902 opt: 904 Z-score: 1110.6 bits: 211.4 E(85289): 4e-55
Smith-Waterman score: 904; 93.5% identity (95.7% similar) in 139 aa overlap (1-139:1-137)
10 20 30 40 50 60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
70 80 90 100 110 120
130 140
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG
:::::::: .. :. :
XP_016 VPKSKLEV--VMSDTQAWCCFQLKILP
130 140
>>XP_005250728 (OMIM: 603477) PREDICTED: protein BUD31 h (145 aa)
initn: 902 init1: 902 opt: 904 Z-score: 1110.6 bits: 211.4 E(85289): 4e-55
Smith-Waterman score: 904; 93.5% identity (95.7% similar) in 139 aa overlap (1-139:1-137)
10 20 30 40 50 60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
70 80 90 100 110 120
130 140
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG
:::::::: .. :. :
XP_005 VPKSKLEV--VMSDTQAWCCFQLKILP
130 140
>>XP_016868250 (OMIM: 603477) PREDICTED: protein BUD31 h (145 aa)
initn: 902 init1: 902 opt: 904 Z-score: 1110.6 bits: 211.4 E(85289): 4e-55
Smith-Waterman score: 904; 93.5% identity (95.7% similar) in 139 aa overlap (1-139:1-137)
10 20 30 40 50 60
pF1KB7 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICR
70 80 90 100 110 120
130 140
pF1KB7 VPKSKLEVGRIIECTHCGCRGCSG
:::::::: .. :. :
XP_016 VPKSKLEV--VMSDTQAWCCFQLKILP
130 140
144 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:25:26 2016 done: Fri Nov 4 08:25:27 2016
Total Scan time: 4.760 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]