Result of FASTA (omim) for
pFN21AB7516
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7516, 246 aa
1>>>pF1KB7516 246 - 246 aa - 246 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2297+/-0.000376; mu= 6.5245+/- 0.023
mean_var=153.1489+/-30.348, 0's: 0 Z-trim(117.6): 84 B-trim: 0 in 0/55
Lambda= 0.103638
statistics sampled from 29590 (29675) to 29590 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.348), width: 16
Scan time: 7.160
The best scores are: opt bits E(85289)
NP_003192 (OMIM: 600438,617156) transcription fact ( 246) 1643 257.0 2.3e-68
NP_001257711 (OMIM: 600438,617156) transcription f ( 214) 992 159.6 4.1e-39
XP_011538422 (OMIM: 600438,617156) PREDICTED: tran ( 149) 987 158.7 5.2e-39
XP_011538423 (OMIM: 600438,617156) PREDICTED: tran ( 148) 986 158.6 5.8e-39
NP_001137447 (OMIM: 613696) upstream-binding facto ( 393) 210 42.9 0.001
>>NP_003192 (OMIM: 600438,617156) transcription factor A (246 aa)
initn: 1643 init1: 1643 opt: 1643 Z-score: 1348.4 bits: 257.0 E(85289): 2.3e-68
Smith-Waterman score: 1643; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)
10 20 30 40 50 60
pF1KB7 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK
190 200 210 220 230 240
pF1KB7 YGAEEC
::::::
NP_003 YGAEEC
>>NP_001257711 (OMIM: 600438,617156) transcription facto (214 aa)
initn: 992 init1: 992 opt: 992 Z-score: 823.2 bits: 159.6 E(85289): 4.1e-39
Smith-Waterman score: 1358; 87.0% identity (87.0% similar) in 246 aa overlap (1-246:1-214)
10 20 30 40 50 60
pF1KB7 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
::::::::::::::::::::::::::::
NP_001 LTPSQIMSLEKEIMDKHLKRKAMTKKKE--------------------------------
130 140
190 200 210 220 230 240
pF1KB7 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQRK
150 160 170 180 190 200
pF1KB7 YGAEEC
::::::
NP_001 YGAEEC
210
>>XP_011538422 (OMIM: 600438,617156) PREDICTED: transcri (149 aa)
initn: 1009 init1: 987 opt: 987 Z-score: 821.3 bits: 158.7 E(85289): 5.2e-39
Smith-Waterman score: 987; 99.3% identity (100.0% similar) in 148 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KB7 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
:::::::::::::::::::::::::::.
XP_011 LTPSQIMSLEKEIMDKHLKRKAMTKKKKS
130 140
>>XP_011538423 (OMIM: 600438,617156) PREDICTED: transcri (148 aa)
initn: 986 init1: 986 opt: 986 Z-score: 820.5 bits: 158.6 E(85289): 5.8e-39
Smith-Waterman score: 986; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)
10 20 30 40 50 60
pF1KB7 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAFLRSMWGVLSALGRSGAELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SKEQLPIFKAQNPDAKTTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLGKPKRPRSAYNVYVAERFQEAKGDSPQE
:::::::::::::::::::::::::::
XP_011 LTPSQIMSLEKEIMDKHLKRKAMTKKKS
130 140
>>NP_001137447 (OMIM: 613696) upstream-binding factor 1- (393 aa)
initn: 192 init1: 192 opt: 210 Z-score: 187.8 bits: 42.9 E(85289): 0.001
Smith-Waterman score: 256; 23.8% identity (61.9% similar) in 189 aa overlap (50-218:100-287)
20 30 40 50 60 70
pF1KB7 ELCTGCGSRLRSPFSFVYLPRWFSSVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTE
::.:...: :: ::. : .. . : .. :
NP_001 FGTLKELVLEAKKCVKKMNKSQKYRNGPDFPKRPLTAYNRFFKESWPQYSQMYPGMRSQE
70 80 90 100 110 120
80 90 100 110 120 130
pF1KB7 LIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLK
: . .....::::.. :. : . .: : : ..:...::.:. :. ... .: ..:. .
NP_001 LTKILSKKYRELPEQMKQKYIQDFRKEKQEFEEKLARFREE-HPDLVQKAKKSSVSKRTQ
130 140 150 160 170 180
140 150 160 170
pF1KB7 RKAMTKK-----------------KELTLLGKPKRP-RSAYNVYVAERF--QEAKGDSPQ
:.. : :.. . :.:..: ..:. . . . .: . : .
NP_001 NKVQKKFQKNIEEVRSLPKTDRFFKKVKFHGEPQKPPMNGYHKFHQDSWSSKEMQHLSVR
190 200 210 220 230 240
180 190 200 210 220 230
pF1KB7 EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVGRKDLLRRTIKKQR
:.. . . :. . .:.:. . ..:.: . .:. .. :
NP_001 ERMVEIGRRWQRIPQSQKDHFKSQAEELQKQYKVKLDLWLKTLSPENYAAYKESTYAKGK
250 260 270 280 290 300
240
pF1KB7 KYGAEEC
NP_001 NMAMTGGPDPRLKQADPQSSSAKGLQEGFGEGQGLQAAGTDSSQTIWVNCHVSMEPEENR
310 320 330 340 350 360
246 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 08:22:31 2016 done: Fri Nov 4 08:22:32 2016
Total Scan time: 7.160 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]