FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7513, 125 aa
  1>>>pF1KB7513 125 - 125 aa - 125 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5920+/-0.000639; mu= 9.4457+/- 0.038
 mean_var=66.9598+/-13.672, 0's: 0 Z-trim(111.6): 14  B-trim: 697 in 1/50
 Lambda= 0.156735
 statistics sampled from 12478 (12488) to 12478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.384), width:  16
 Scan time:  1.590

The best scores are:                                      opt bits E(32554)
CCDS12487.1 POLR2I gene_id:5438|Hs108|chr19        ( 125)  910 213.7 2.4e-56


>>CCDS12487.1 POLR2I gene_id:5438|Hs108|chr19             (125 aa)
 initn: 910 init1: 910 opt: 910  Z-score: 1125.0  bits: 213.7 E(32554): 2.4e-56
Smith-Waterman score: 910; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125)

               10        20        30        40        50        60
pF1KB7 MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEPDGTYEPGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EVDELTQIIADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCG
               70        80        90       100       110       120

            
pF1KB7 HRWTE
       :::::
CCDS12 HRWTE
            




125 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:20:10 2016 done: Fri Nov  4 08:20:10 2016
 Total Scan time:  1.590 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]