Result of FASTA (omim) for pFN21AB7509
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7509, 112 aa
  1>>>pF1KB7509 112 - 112 aa - 112 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3225+/-0.000308; mu= 14.5053+/- 0.019
 mean_var=46.9633+/- 9.358, 0's: 0 Z-trim(114.4): 20  B-trim: 0 in 0/52
 Lambda= 0.187152
 statistics sampled from 24234 (24254) to 24234 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.284), width:  16
 Scan time:  4.350

The best scores are:                                      opt bits E(85289)
NP_001191791 (OMIM: 600788) transcription elongati ( 112)  745 208.0 2.6e-54
NP_001191790 (OMIM: 600788) transcription elongati ( 112)  745 208.0 2.6e-54
NP_001191787 (OMIM: 600788) transcription elongati ( 112)  745 208.0 2.6e-54
XP_011515883 (OMIM: 600788) PREDICTED: transcripti ( 112)  745 208.0 2.6e-54
NP_001191786 (OMIM: 600788) transcription elongati ( 112)  745 208.0 2.6e-54
NP_001191788 (OMIM: 600788) transcription elongati ( 112)  745 208.0 2.6e-54
XP_011515882 (OMIM: 600788) PREDICTED: transcripti ( 112)  745 208.0 2.6e-54
NP_001191789 (OMIM: 600788) transcription elongati ( 112)  745 208.0 2.6e-54
NP_005639 (OMIM: 600788) transcription elongation  ( 112)  745 208.0 2.6e-54
NP_001191792 (OMIM: 600788) transcription elongati (  96)  625 175.5 1.3e-44
NP_001191793 (OMIM: 600788) transcription elongati (  96)  625 175.5 1.3e-44


>>NP_001191791 (OMIM: 600788) transcription elongation f  (112 aa)
 initn: 745 init1: 745 opt: 745  Z-score: 1096.0  bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
               10        20        30        40        50        60

               70        80        90       100       110  
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
               70        80        90       100       110  

>>NP_001191790 (OMIM: 600788) transcription elongation f  (112 aa)
 initn: 745 init1: 745 opt: 745  Z-score: 1096.0  bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
               10        20        30        40        50        60

               70        80        90       100       110  
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
               70        80        90       100       110  

>>NP_001191787 (OMIM: 600788) transcription elongation f  (112 aa)
 initn: 745 init1: 745 opt: 745  Z-score: 1096.0  bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
               10        20        30        40        50        60

               70        80        90       100       110  
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
               70        80        90       100       110  

>>XP_011515883 (OMIM: 600788) PREDICTED: transcription e  (112 aa)
 initn: 745 init1: 745 opt: 745  Z-score: 1096.0  bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
               10        20        30        40        50        60

               70        80        90       100       110  
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
               70        80        90       100       110  

>>NP_001191786 (OMIM: 600788) transcription elongation f  (112 aa)
 initn: 745 init1: 745 opt: 745  Z-score: 1096.0  bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
               10        20        30        40        50        60

               70        80        90       100       110  
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
               70        80        90       100       110  

>>NP_001191788 (OMIM: 600788) transcription elongation f  (112 aa)
 initn: 745 init1: 745 opt: 745  Z-score: 1096.0  bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
               10        20        30        40        50        60

               70        80        90       100       110  
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
               70        80        90       100       110  

>>XP_011515882 (OMIM: 600788) PREDICTED: transcription e  (112 aa)
 initn: 745 init1: 745 opt: 745  Z-score: 1096.0  bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
               10        20        30        40        50        60

               70        80        90       100       110  
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
               70        80        90       100       110  

>>NP_001191789 (OMIM: 600788) transcription elongation f  (112 aa)
 initn: 745 init1: 745 opt: 745  Z-score: 1096.0  bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
               10        20        30        40        50        60

               70        80        90       100       110  
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
               70        80        90       100       110  

>>NP_005639 (OMIM: 600788) transcription elongation fact  (112 aa)
 initn: 745 init1: 745 opt: 745  Z-score: 1096.0  bits: 208.0 E(85289): 2.6e-54
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:1-112)

               10        20        30        40        50        60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
               10        20        30        40        50        60

               70        80        90       100       110  
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
               70        80        90       100       110  

>>NP_001191792 (OMIM: 600788) transcription elongation f  (96 aa)
 initn: 625 init1: 625 opt: 625  Z-score: 921.9  bits: 175.5 E(85289): 1.3e-44
Smith-Waterman score: 625; 100.0% identity (100.0% similar) in 96 aa overlap (17-112:1-96)

               10        20        30        40        50        60
pF1KB7 MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
                       ::::::::::::::::::::::::::::::::::::::::::::
NP_001                 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEV
                               10        20        30        40    

               70        80        90       100       110  
pF1KB7 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
           50        60        70        80        90      




112 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 08:16:54 2016 done: Fri Nov  4 08:16:54 2016
 Total Scan time:  4.350 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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