Result of FASTA (omim) for
pFN21AB7422
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7422, 136 aa
1>>>pF1KB7422 136 - 136 aa - 136 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8045+/-0.000318; mu= 14.8533+/- 0.020
mean_var=65.5695+/-12.816, 0's: 0 Z-trim(115.6): 20 B-trim: 0 in 0/55
Lambda= 0.158388
statistics sampled from 26195 (26215) to 26195 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.307), width: 16
Scan time: 4.670
The best scores are: opt bits E(85289)
NP_066403 (OMIM: 142780) histone H3.2 [Homo sapien ( 136) 862 204.9 3.3e-53
NP_003527 (OMIM: 602818) histone H3.1 [Homo sapien ( 136) 856 203.5 8.5e-53
NP_003521 (OMIM: 602811) histone H3.1 [Homo sapien ( 136) 856 203.5 8.5e-53
NP_003526 (OMIM: 602817) histone H3.1 [Homo sapien ( 136) 856 203.5 8.5e-53
NP_003522 (OMIM: 602812) histone H3.1 [Homo sapien ( 136) 856 203.5 8.5e-53
NP_003520 (OMIM: 602810) histone H3.1 [Homo sapien ( 136) 856 203.5 8.5e-53
NP_003528 (OMIM: 602819) histone H3.1 [Homo sapien ( 136) 856 203.5 8.5e-53
NP_003524 (OMIM: 602814) histone H3.1 [Homo sapien ( 136) 856 203.5 8.5e-53
NP_003523 (OMIM: 602813) histone H3.1 [Homo sapien ( 136) 856 203.5 8.5e-53
NP_066298 (OMIM: 602816) histone H3.1 [Homo sapien ( 136) 856 203.5 8.5e-53
NP_003525 (OMIM: 602815) histone H3.1 [Homo sapien ( 136) 856 203.5 8.5e-53
NP_002098 (OMIM: 601128) histone H3.3 [Homo sapien ( 136) 843 200.6 6.7e-52
NP_005315 (OMIM: 601058) histone H3.3 [Homo sapien ( 136) 843 200.6 6.7e-52
NP_003484 (OMIM: 602820) histone H3.1t [Homo sapie ( 136) 838 199.4 1.5e-51
NP_001013721 (OMIM: 616134) histone H3.3C [Homo sa ( 135) 797 190.0 9.7e-49
NP_001800 (OMIM: 117139) histone H3-like centromer ( 140) 376 93.9 9.1e-20
NP_001035891 (OMIM: 117139) histone H3-like centro ( 114) 170 46.7 1.2e-05
>>NP_066403 (OMIM: 142780) histone H3.2 [Homo sapiens] (136 aa)
initn: 862 init1: 862 opt: 862 Z-score: 1076.2 bits: 204.9 E(85289): 3.3e-53
Smith-Waterman score: 862; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
NP_066 MPKDIQLARRIRGERA
130
>>NP_003527 (OMIM: 602818) histone H3.1 [Homo sapiens] (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1068.8 bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003521 (OMIM: 602811) histone H3.1 [Homo sapiens] (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1068.8 bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003526 (OMIM: 602817) histone H3.1 [Homo sapiens] (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1068.8 bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003522 (OMIM: 602812) histone H3.1 [Homo sapiens] (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1068.8 bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003520 (OMIM: 602810) histone H3.1 [Homo sapiens] (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1068.8 bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003528 (OMIM: 602819) histone H3.1 [Homo sapiens] (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1068.8 bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003524 (OMIM: 602814) histone H3.1 [Homo sapiens] (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1068.8 bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_003523 (OMIM: 602813) histone H3.1 [Homo sapiens] (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1068.8 bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
NP_003 MPKDIQLARRIRGERA
130
>>NP_066298 (OMIM: 602816) histone H3.1 [Homo sapiens] (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1068.8 bits: 203.5 E(85289): 8.5e-53
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_066 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
NP_066 MPKDIQLARRIRGERA
130
136 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:39:23 2016 done: Fri Nov 4 07:39:24 2016
Total Scan time: 4.670 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]