Result of FASTA (omim) for pFN21AB7359
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7359, 339 aa
  1>>>pF1KB7359 339 - 339 aa - 339 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5895+/-0.000399; mu= 15.4914+/- 0.024
 mean_var=102.4592+/-22.230, 0's: 0 Z-trim(112.2): 222  B-trim: 0 in 0/53
 Lambda= 0.126706
 statistics sampled from 20814 (21047) to 20814 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.247), width:  16
 Scan time:  6.400

The best scores are:                                      opt bits E(85289)
XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin c ( 928)  733 145.3 4.9e-34
XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin c ( 928)  733 145.3 4.9e-34
NP_001269978 (OMIM: 603158) ubiquitin carboxyl-ter (1012)  733 145.3 5.2e-34
XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin c (1089)  733 145.4 5.5e-34
XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin c (1089)  733 145.4 5.5e-34
XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin c (1089)  733 145.4 5.5e-34
XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin c (1089)  733 145.4 5.5e-34
XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin c (1118)  733 145.4 5.6e-34
NP_005145 (OMIM: 603158) ubiquitin carboxyl-termin (1118)  733 145.4 5.6e-34
XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin c (1118)  733 145.4 5.6e-34
NP_001122082 (OMIM: 603158) ubiquitin carboxyl-ter (1118)  733 145.4 5.6e-34
NP_001230688 (OMIM: 604725) ubiquitin carboxyl-ter ( 362)  428 89.1 1.5e-17
XP_016874028 (OMIM: 604725) PREDICTED: ubiquitin c ( 352)  421 87.9 3.6e-17
NP_741994 (OMIM: 604725) ubiquitin carboxyl-termin ( 396)  421 87.9   4e-17
NP_004196 (OMIM: 604725) ubiquitin carboxyl-termin ( 605)  421 88.1 5.3e-17
XP_005271778 (OMIM: 604725) PREDICTED: ubiquitin c ( 605)  421 88.1 5.3e-17
XP_005271779 (OMIM: 604725) PREDICTED: ubiquitin c ( 605)  421 88.1 5.3e-17
XP_006719781 (OMIM: 604731) PREDICTED: ubiquitin c ( 775)  351 75.4 4.5e-13
NP_006304 (OMIM: 604731) ubiquitin carboxyl-termin ( 952)  352 75.7 4.6e-13
XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin c ( 860)  351 75.4 4.9e-13
XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin c ( 860)  351 75.4 4.9e-13
NP_001239007 (OMIM: 604731) ubiquitin carboxyl-ter ( 981)  351 75.5 5.4e-13
NP_036607 (OMIM: 604729) ubiquitin carboxyl-termin ( 565)  340 73.2 1.5e-12
NP_001014443 (OMIM: 604729) ubiquitin carboxyl-ter ( 565)  340 73.2 1.5e-12
XP_016856529 (OMIM: 604729) PREDICTED: ubiquitin c ( 594)  340 73.3 1.5e-12
NP_001306776 (OMIM: 604729) ubiquitin carboxyl-ter ( 594)  340 73.3 1.5e-12
XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin c ( 341)  336 72.3 1.7e-12
NP_001127695 (OMIM: 612849) ubiquitin carboxyl-ter ( 359)  336 72.3 1.8e-12
NP_073743 (OMIM: 612849) ubiquitin carboxyl-termin ( 366)  336 72.3 1.8e-12
NP_955475 (OMIM: 603486) ubiquitin carboxyl-termin ( 916)  334 72.4 4.4e-12
NP_003354 (OMIM: 603486) ubiquitin carboxyl-termin ( 963)  334 72.4 4.6e-12
XP_011522361 (OMIM: 604334) PREDICTED: ubiquitin c ( 786)  319 69.5 2.6e-11
XP_011522360 (OMIM: 604334) PREDICTED: ubiquitin c (1031)  319 69.7 3.2e-11
XP_016880723 (OMIM: 607740) PREDICTED: ubiquitin c (1288)  319 69.8 3.7e-11
XP_011523681 (OMIM: 607740) PREDICTED: ubiquitin c (1327)  319 69.8 3.8e-11
XP_011522359 (OMIM: 604334) PREDICTED: ubiquitin c (1384)  319 69.8 3.9e-11
XP_011522358 (OMIM: 604334) PREDICTED: ubiquitin c (1406)  319 69.8   4e-11
XP_011522353 (OMIM: 604334) PREDICTED: ubiquitin c (1406)  319 69.8   4e-11
XP_016880779 (OMIM: 604334) PREDICTED: ubiquitin c (1406)  319 69.8   4e-11
XP_011522354 (OMIM: 604334) PREDICTED: ubiquitin c (1406)  319 69.8   4e-11
XP_011522356 (OMIM: 604334) PREDICTED: ubiquitin c (1406)  319 69.8   4e-11
XP_011522355 (OMIM: 604334) PREDICTED: ubiquitin c (1406)  319 69.8   4e-11
XP_011522357 (OMIM: 604334) PREDICTED: ubiquitin c (1406)  319 69.8   4e-11
XP_011522352 (OMIM: 604334) PREDICTED: ubiquitin c (1406)  319 69.8   4e-11
NP_001291213 (OMIM: 604334) ubiquitin carboxyl-ter (1406)  319 69.8   4e-11
NP_004496 (OMIM: 604334) ubiquitin carboxyl-termin (1406)  319 69.8   4e-11
XP_016880722 (OMIM: 607740) PREDICTED: ubiquitin c (1558)  319 69.8 4.3e-11
XP_011523680 (OMIM: 607740) PREDICTED: ubiquitin c (1572)  319 69.8 4.3e-11
XP_011523678 (OMIM: 607740) PREDICTED: ubiquitin c (1601)  319 69.8 4.4e-11
NP_115971 (OMIM: 607740) ubiquitin carboxyl-termin (1604)  319 69.8 4.4e-11


>>XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin carbo  (928 aa)
 initn: 739 init1: 493 opt: 733  Z-score: 732.0  bits: 145.3 E(85289): 4.9e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:577-888)

        10        20        30        40            50        60   
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
                                     : : :    .::: :::::: .:.: ::::
XP_016 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
        550       560       570       580       590       600      

            70        80        90       100       110       120   
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
       .   :..::  . :   ...  : .  .:::  :. .:  .: :.   .::. :  ..:.
XP_016 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
        610       620       630       640       650       660      

           130       140       150       160              170      
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
       .   :.   :::.::.:. ... ::: :.:    .: . :..       ....  .:   
XP_016 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
        670       680       690       700       710       720      

        180       190       200       210       220       230      
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
        . :::. ::. :.. .. :: :.: .   :.:  .:::. :  .:.:.:::. : ... 
XP_016 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
        730       740       750       760       770       780      

        240       250       260       270       280       290      
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
       :: ::...:: :......  .  : : : ... :::::. .:  :.::.:.. .:: :::
XP_016 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
        790       800       810       820       830       840      

        300       310       320       330                          
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA                 
       :. :. .   .  :::: .: ::.: ::::::::.:::.. :                  
XP_016 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
        850       860       870       880       890       900      

XP_016 KSSAAYILFYTSLGPRVTDVAT
        910       920        

>>XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin carbo  (928 aa)
 initn: 739 init1: 493 opt: 733  Z-score: 732.0  bits: 145.3 E(85289): 4.9e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:577-888)

        10        20        30        40            50        60   
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
                                     : : :    .::: :::::: .:.: ::::
XP_016 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
        550       560       570       580       590       600      

            70        80        90       100       110       120   
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
       .   :..::  . :   ...  : .  .:::  :. .:  .: :.   .::. :  ..:.
XP_016 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
        610       620       630       640       650       660      

           130       140       150       160              170      
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
       .   :.   :::.::.:. ... ::: :.:    .: . :..       ....  .:   
XP_016 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
        670       680       690       700       710       720      

        180       190       200       210       220       230      
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
        . :::. ::. :.. .. :: :.: .   :.:  .:::. :  .:.:.:::. : ... 
XP_016 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
        730       740       750       760       770       780      

        240       250       260       270       280       290      
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
       :: ::...:: :......  .  : : : ... :::::. .:  :.::.:.. .:: :::
XP_016 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
        790       800       810       820       830       840      

        300       310       320       330                          
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA                 
       :. :. .   .  :::: .: ::.: ::::::::.:::.. :                  
XP_016 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
        850       860       870       880       890       900      

XP_016 KSSAAYILFYTSLGPRVTDVAT
        910       920        

>>NP_001269978 (OMIM: 603158) ubiquitin carboxyl-termina  (1012 aa)
 initn: 739 init1: 493 opt: 733  Z-score: 731.5  bits: 145.3 E(85289): 5.2e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:661-972)

        10        20        30        40            50        60   
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
                                     : : :    .::: :::::: .:.: ::::
NP_001 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
              640       650       660       670       680       690

            70        80        90       100       110       120   
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
       .   :..::  . :   ...  : .  .:::  :. .:  .: :.   .::. :  ..:.
NP_001 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
              700       710       720       730       740       750

           130       140       150       160              170      
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
       .   :.   :::.::.:. ... ::: :.:    .: . :..       ....  .:   
NP_001 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
              760       770       780       790       800       810

        180       190       200       210       220       230      
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
        . :::. ::. :.. .. :: :.: .   :.:  .:::. :  .:.:.:::. : ... 
NP_001 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
              820       830       840       850       860       870

        240       250       260       270       280       290      
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
       :: ::...:: :......  .  : : : ... :::::. .:  :.::.:.. .:: :::
NP_001 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
              880       890       900       910       920       930

        300       310       320       330                          
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA                 
       :. :. .   .  :::: .: ::.: ::::::::.:::.. :                  
NP_001 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
              940       950       960       970       980       990

NP_001 KSSAAYILFYTSLGPRVTDVAT
             1000      1010  

>>XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin carbo  (1089 aa)
 initn: 739 init1: 493 opt: 733  Z-score: 731.1  bits: 145.4 E(85289): 5.5e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:738-1049)

        10        20        30        40            50        60   
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
                                     : : :    .::: :::::: .:.: ::::
XP_016 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
       710       720       730       740       750       760       

            70        80        90       100       110       120   
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
       .   :..::  . :   ...  : .  .:::  :. .:  .: :.   .::. :  ..:.
XP_016 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
       770       780       790       800       810       820       

           130       140       150       160              170      
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
       .   :.   :::.::.:. ... ::: :.:    .: . :..       ....  .:   
XP_016 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
       830       840       850       860       870       880       

        180       190       200       210       220       230      
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
        . :::. ::. :.. .. :: :.: .   :.:  .:::. :  .:.:.:::. : ... 
XP_016 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
       890       900       910       920       930       940       

        240       250       260       270       280       290      
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
       :: ::...:: :......  .  : : : ... :::::. .:  :.::.:.. .:: :::
XP_016 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
       950       960       970       980       990      1000       

        300       310       320       330                          
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA                 
       :. :. .   .  :::: .: ::.: ::::::::.:::.. :                  
XP_016 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
      1010      1020      1030      1040      1050      1060       

XP_016 KSSAAYILFYTSLGPRVTDVAT
      1070      1080         

>>XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin carbo  (1089 aa)
 initn: 739 init1: 493 opt: 733  Z-score: 731.1  bits: 145.4 E(85289): 5.5e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:738-1049)

        10        20        30        40            50        60   
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
                                     : : :    .::: :::::: .:.: ::::
XP_006 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
       710       720       730       740       750       760       

            70        80        90       100       110       120   
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
       .   :..::  . :   ...  : .  .:::  :. .:  .: :.   .::. :  ..:.
XP_006 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
       770       780       790       800       810       820       

           130       140       150       160              170      
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
       .   :.   :::.::.:. ... ::: :.:    .: . :..       ....  .:   
XP_006 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
       830       840       850       860       870       880       

        180       190       200       210       220       230      
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
        . :::. ::. :.. .. :: :.: .   :.:  .:::. :  .:.:.:::. : ... 
XP_006 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
       890       900       910       920       930       940       

        240       250       260       270       280       290      
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
       :: ::...:: :......  .  : : : ... :::::. .:  :.::.:.. .:: :::
XP_006 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
       950       960       970       980       990      1000       

        300       310       320       330                          
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA                 
       :. :. .   .  :::: .: ::.: ::::::::.:::.. :                  
XP_006 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
      1010      1020      1030      1040      1050      1060       

XP_006 KSSAAYILFYTSLGPRVTDVAT
      1070      1080         

>>XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin carbo  (1089 aa)
 initn: 739 init1: 493 opt: 733  Z-score: 731.1  bits: 145.4 E(85289): 5.5e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:738-1049)

        10        20        30        40            50        60   
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
                                     : : :    .::: :::::: .:.: ::::
XP_016 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
       710       720       730       740       750       760       

            70        80        90       100       110       120   
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
       .   :..::  . :   ...  : .  .:::  :. .:  .: :.   .::. :  ..:.
XP_016 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
       770       780       790       800       810       820       

           130       140       150       160              170      
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
       .   :.   :::.::.:. ... ::: :.:    .: . :..       ....  .:   
XP_016 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
       830       840       850       860       870       880       

        180       190       200       210       220       230      
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
        . :::. ::. :.. .. :: :.: .   :.:  .:::. :  .:.:.:::. : ... 
XP_016 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
       890       900       910       920       930       940       

        240       250       260       270       280       290      
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
       :: ::...:: :......  .  : : : ... :::::. .:  :.::.:.. .:: :::
XP_016 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
       950       960       970       980       990      1000       

        300       310       320       330                          
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA                 
       :. :. .   .  :::: .: ::.: ::::::::.:::.. :                  
XP_016 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
      1010      1020      1030      1040      1050      1060       

XP_016 KSSAAYILFYTSLGPRVTDVAT
      1070      1080         

>>XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin carbo  (1089 aa)
 initn: 739 init1: 493 opt: 733  Z-score: 731.1  bits: 145.4 E(85289): 5.5e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:738-1049)

        10        20        30        40            50        60   
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
                                     : : :    .::: :::::: .:.: ::::
XP_016 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
       710       720       730       740       750       760       

            70        80        90       100       110       120   
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
       .   :..::  . :   ...  : .  .:::  :. .:  .: :.   .::. :  ..:.
XP_016 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
       770       780       790       800       810       820       

           130       140       150       160              170      
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
       .   :.   :::.::.:. ... ::: :.:    .: . :..       ....  .:   
XP_016 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
       830       840       850       860       870       880       

        180       190       200       210       220       230      
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
        . :::. ::. :.. .. :: :.: .   :.:  .:::. :  .:.:.:::. : ... 
XP_016 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
       890       900       910       920       930       940       

        240       250       260       270       280       290      
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
       :: ::...:: :......  .  : : : ... :::::. .:  :.::.:.. .:: :::
XP_016 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
       950       960       970       980       990      1000       

        300       310       320       330                          
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA                 
       :. :. .   .  :::: .: ::.: ::::::::.:::.. :                  
XP_016 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
      1010      1020      1030      1040      1050      1060       

XP_016 KSSAAYILFYTSLGPRVTDVAT
      1070      1080         

>>XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin carbo  (1118 aa)
 initn: 739 init1: 493 opt: 733  Z-score: 731.0  bits: 145.4 E(85289): 5.6e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:767-1078)

        10        20        30        40            50        60   
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
                                     : : :    .::: :::::: .:.: ::::
XP_006 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
        740       750       760       770       780       790      

            70        80        90       100       110       120   
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
       .   :..::  . :   ...  : .  .:::  :. .:  .: :.   .::. :  ..:.
XP_006 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
        800       810       820       830       840       850      

           130       140       150       160              170      
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
       .   :.   :::.::.:. ... ::: :.:    .: . :..       ....  .:   
XP_006 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
        860       870       880       890       900       910      

        180       190       200       210       220       230      
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
        . :::. ::. :.. .. :: :.: .   :.:  .:::. :  .:.:.:::. : ... 
XP_006 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
        920       930       940       950       960       970      

        240       250       260       270       280       290      
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
       :: ::...:: :......  .  : : : ... :::::. .:  :.::.:.. .:: :::
XP_006 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
        980       990      1000      1010      1020      1030      

        300       310       320       330                          
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA                 
       :. :. .   .  :::: .: ::.: ::::::::.:::.. :                  
XP_006 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
       1040      1050      1060      1070      1080      1090      

XP_006 KSSAAYILFYTSLGPRVTDVAT
       1100      1110        

>>NP_005145 (OMIM: 603158) ubiquitin carboxyl-terminal h  (1118 aa)
 initn: 739 init1: 493 opt: 733  Z-score: 731.0  bits: 145.4 E(85289): 5.6e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:767-1078)

        10        20        30        40            50        60   
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
                                     : : :    .::: :::::: .:.: ::::
NP_005 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
        740       750       760       770       780       790      

            70        80        90       100       110       120   
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
       .   :..::  . :   ...  : .  .:::  :. .:  .: :.   .::. :  ..:.
NP_005 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
        800       810       820       830       840       850      

           130       140       150       160              170      
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
       .   :.   :::.::.:. ... ::: :.:    .: . :..       ....  .:   
NP_005 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
        860       870       880       890       900       910      

        180       190       200       210       220       230      
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
        . :::. ::. :.. .. :: :.: .   :.:  .:::. :  .:.:.:::. : ... 
NP_005 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
        920       930       940       950       960       970      

        240       250       260       270       280       290      
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
       :: ::...:: :......  .  : : : ... :::::. .:  :.::.:.. .:: :::
NP_005 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
        980       990      1000      1010      1020      1030      

        300       310       320       330                          
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA                 
       :. :. .   .  :::: .: ::.: ::::::::.:::.. :                  
NP_005 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
       1040      1050      1060      1070      1080      1090      

NP_005 KSSAAYILFYTSLGPRVTDVAT
       1100      1110        

>>XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin carbo  (1118 aa)
 initn: 739 init1: 493 opt: 733  Z-score: 731.0  bits: 145.4 E(85289): 5.6e-34
Smith-Waterman score: 734; 37.8% identity (65.7% similar) in 312 aa overlap (38-338:767-1078)

        10        20        30        40            50        60   
pF1KB7 PADDFDIYHVLAECTDYYDTLPVKEADGNQPHFQG----VTGLWNLGNTCCVNAISQCLC
                                     : : :    .::: :::::: .:.: ::::
XP_011 TPTVNRENKPTCYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLC
        740       750       760       770       780       790      

            70        80        90       100       110       120   
pF1KB7 SILPLVEYFLTGKYITALQKFLLPSDCSEVATAFAYLMTDMWLGDSDCVSPEIFWSALGN
       .   :..::  . :   ...  : .  .:::  :. .:  .: :.   .::. :  ..:.
XP_011 NAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGK
        800       810       820       830       840       850      

           130       140       150       160              170      
pF1KB7 LYPAFTKKMQQDAQEFLICVLNELHEALKKYHYSRRRSYEKG-------STQRCCRKWIT
       .   :.   :::.::.:. ... ::: :.:    .: . :..       ....  .:   
XP_011 INDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQ
        860       870       880       890       900       910      

        180       190       200       210       220       230      
pF1KB7 TETSIITQLFEEQLNYSIVCLKCEKCTYKNEVFTVFSLPIPSKYECSLRDCLQCFFQQDA
        . :::. ::. :.. .. :: :.: .   :.:  .:::. :  .:.:.:::. : ... 
XP_011 LNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEK
        920       930       940       950       960       970      

        240       250       260       270       280       290      
pF1KB7 LTWNNEIHCSFCETKQETAVRASISKAPKIIIFHLKRFDIQGTTKRKLRTDIHYPLTNLD
       :: ::...:: :......  .  : : : ... :::::. .:  :.::.:.. .:: :::
XP_011 LTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLD
        980       990      1000      1010      1020      1030      

        300       310       320       330                          
pF1KB7 LTPYICSIFRKYPKYNLCAVVNHFGDLDGGHYTAFCKNSVTQA                 
       :. :. .   .  :::: .: ::.: ::::::::.:::.. :                  
XP_011 LSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSV
       1040      1050      1060      1070      1080      1090      

XP_011 KSSAAYILFYTSLGPRVTDVAT
       1100      1110        




339 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:49:59 2016 done: Fri Nov  4 06:50:00 2016
 Total Scan time:  6.400 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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