hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/smart.HMMs.bin Sequence file: /tmp/20080306/iprscan-20080306-18383330/chunk_1/iprscan-20080306-18383330.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB7271 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 83.7 2.2e-20 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00355 1/3 377 401 .. 1 23 [] 25.8 0.0058 SM00355 2/3 407 431 .. 1 23 [] 30.2 0.00029 SM00355 3/3 437 459 .. 1 23 [] 27.7 0.0016 Alignments of top-scoring domains: SM00355: domain 1 of 3, from 377 to 401: score 25.8, E = 0.0058 *->ykCpi.gCgksfssk.aLkrHmrvH<-* y+C+++gC k++ ++Lk H+r+H pF1KB7271 377 YVCSFpGCRKTYFKSsHLKAHLRTH 401 SM00355: domain 2 of 3, from 407 to 431: score 30.2, E = 0.00029 *->ykCpi.gCgksfssk.aLkrHmrvH<-* + C+++gC+k+f + ++L rH r+H pF1KB7271 407 FNCSWdGCDKKFARSdELSRHRRTH 431 SM00355: domain 3 of 3, from 437 to 459: score 27.7, E = 0.0016 *->ykCpigCgksfssk.aLkrHmrvH<-* ++Cp+ C+++f + ++L++H r+H pF1KB7271 437 FVCPV-CDRRFMRSdHLTKHARRH 459 //