hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/Pfam.bin Sequence file: /tmp/20080306/iprscan-20080306-18383330/chunk_1/iprscan-20080306-18383330.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KB7271 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 98.8 1.5e-26 3 PF00096.16.fs Zinc finger, C2H2 type 92.9 9.1e-25 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/3 377 401 .. 1 24 [] 28.9 5.8e-06 PF00096.16.ls 1/3 377 401 .. 1 24 [] 30.9 4e-06 PF00096.16.fs 2/3 407 431 .. 1 24 [] 33.6 4.1e-07 PF00096.16.ls 2/3 407 431 .. 1 24 [] 35.6 1.6e-07 PF00096.16.fs 3/3 437 459 .. 1 24 [] 30.4 2.6e-06 PF00096.16.ls 3/3 437 459 .. 1 24 [] 32.3 1.5e-06 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 3, from 377 to 401: score 28.9, E = 5.8e-06 *->ykCpf.dCgksFsrksnLkrHlrtH<-* y+C+f++C k++ +s+Lk+HlrtH pF1KB7271 377 YVCSFpGCRKTYFKSSHLKAHLRTH 401 PF00096.16.ls: domain 1 of 3, from 377 to 401: score 30.9, E = 4e-06 *->ykCpf.dCgksFsrksnLkrHlrtH<-* y+C+f++C k++ +s+Lk+HlrtH pF1KB7271 377 YVCSFpGCRKTYFKSSHLKAHLRTH 401 PF00096.16.fs: domain 2 of 3, from 407 to 431: score 33.6, E = 4.1e-07 *->ykCpf.dCgksFsrksnLkrHlrtH<-* + C++++C+k+F r+++L rH+rtH pF1KB7271 407 FNCSWdGCDKKFARSDELSRHRRTH 431 PF00096.16.ls: domain 2 of 3, from 407 to 431: score 35.6, E = 1.6e-07 *->ykCpf.dCgksFsrksnLkrHlrtH<-* + C++++C+k+F r+++L rH+rtH pF1KB7271 407 FNCSWdGCDKKFARSDELSRHRRTH 431 PF00096.16.fs: domain 3 of 3, from 437 to 459: score 30.4, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +C+++F r+++L++H r+H pF1KB7271 437 FVCP-VCDRRFMRSDHLTKHARRH 459 PF00096.16.ls: domain 3 of 3, from 437 to 459: score 32.3, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +C+++F r+++L++H r+H pF1KB7271 437 FVCP-VCDRRFMRSDHLTKHARRH 459 //