FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7210, 121 aa
  1>>>pF1KB7210 121 - 121 aa - 121 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9297+/-0.00039; mu= 11.3985+/- 0.024
 mean_var=47.1265+/- 9.383, 0's: 0 Z-trim(111.0): 22  B-trim: 157 in 1/51
 Lambda= 0.186828
 statistics sampled from 19488 (19495) to 19488 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.611), E-opt: 0.2 (0.229), width:  16
 Scan time:  3.340

The best scores are:                                      opt bits E(85289)
NP_001020404 (OMIM: 616988) chronic lymphocytic le ( 121)  809 225.4 1.7e-59


>>NP_001020404 (OMIM: 616988) chronic lymphocytic leukem  (121 aa)
 initn: 809 init1: 809 opt: 809  Z-score: 1188.9  bits: 225.4 E(85289): 1.7e-59
Smith-Waterman score: 809; 100.0% identity (100.0% similar) in 121 aa overlap (1-121:1-121)

               10        20        30        40        50        60
pF1KB7 MFNKCSFHSSIYRPAADNSASSLCAIICFLNLVIECDLETNSEINKLIIYLFSQNNRIRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MFNKCSFHSSIYRPAADNSASSLCAIICFLNLVIECDLETNSEINKLIIYLFSQNNRIRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SKLLLKILFYISIFSYPELMCEQYVTFIKPGIHYGQVSKKHIIYSTFLSKNFKFQLLRVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SKLLLKILFYISIFSYPELMCEQYVTFIKPGIHYGQVSKKHIIYSTFLSKNFKFQLLRVC
               70        80        90       100       110       120

        
pF1KB7 W
       :
NP_001 W
        




121 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:00:09 2016 done: Fri Nov  4 06:00:09 2016
 Total Scan time:  3.340 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]