Result of FASTA (ccds) for
pFN21AB7204
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7204, 189 aa
1>>>pF1KB7204 189 - 189 aa - 189 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3202+/-0.000908; mu= 12.4376+/- 0.054
mean_var=58.5301+/-11.811, 0's: 0 Z-trim(104.5): 18 B-trim: 4 in 1/49
Lambda= 0.167643
statistics sampled from 7895 (7912) to 7895 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.243), width: 16
Scan time: 1.940
The best scores are: opt bits E(32554)
CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 ( 189) 1242 308.6 1.4e-84
CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 ( 189) 1106 275.7 1.1e-74
CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 ( 189) 1082 269.9 6.4e-73
CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 ( 189) 1081 269.7 7.6e-73
CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 ( 189) 1061 264.9 2.2e-71
CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 ( 189) 1053 262.9 8.3e-71
CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 ( 189) 1040 259.8 7.3e-70
CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 ( 189) 1039 259.5 8.7e-70
CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 ( 188) 991 247.9 2.7e-66
CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 ( 189) 975 244.1 4e-65
CCDS6507.1 IFNA8 gene_id:3445|Hs108|chr9 ( 189) 973 243.6 5.5e-65
CCDS6505.2 IFNA13 gene_id:3447|Hs108|chr9 ( 190) 944 236.6 7.2e-63
CCDS6508.1 IFNA1 gene_id:3439|Hs108|chr9 ( 189) 939 235.3 1.7e-62
CCDS6496.1 IFNW1 gene_id:3467|Hs108|chr9 ( 195) 681 173.0 1e-43
CCDS6495.1 IFNB1 gene_id:3456|Hs108|chr9 ( 187) 347 92.2 2.1e-19
CCDS34997.1 IFNE gene_id:338376|Hs108|chr9 ( 208) 340 90.5 7.4e-19
>>CCDS34996.1 IFNA16 gene_id:3449|Hs108|chr9 (189 aa)
initn: 1242 init1: 1242 opt: 1242 Z-score: 1631.7 bits: 308.6 E(32554): 1.4e-84
Smith-Waterman score: 1242; 100.0% identity (100.0% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KB7 LQKGLRRKD
:::::::::
CCDS34 LQKGLRRKD
>>CCDS6498.1 IFNA4 gene_id:3441|Hs108|chr9 (189 aa)
initn: 1106 init1: 1106 opt: 1106 Z-score: 1454.0 bits: 275.7 E(32554): 1.1e-74
Smith-Waterman score: 1106; 88.9% identity (95.2% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
::.: :::.:::::::::..:::::::::::::.::::::...::.:: ::.:::::::
CCDS64 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
::: ::::::: ::::::::::::::::::::: ::::::::::::::::::.:::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KB7 LQKGLRRKD
::: :::::
CCDS64 LQKRLRRKD
>>CCDS6500.1 IFNA17 gene_id:3451|Hs108|chr9 (189 aa)
initn: 1082 init1: 1082 opt: 1082 Z-score: 1422.6 bits: 269.9 E(32554): 6.4e-73
Smith-Waterman score: 1082; 87.3% identity (94.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::.:::
CCDS65 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
.::: ::::::::.::::..:::::::::::::.::::::...::.:: ::.::::.::
CCDS65 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
::: ::::.:: ::::::::::::::::::::: ::::::::::::::::::.:::::
CCDS65 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KB7 LQKGLRRKD
::: :::::
CCDS65 LQKILRRKD
>>CCDS6499.1 IFNA10 gene_id:3446|Hs108|chr9 (189 aa)
initn: 1081 init1: 1081 opt: 1081 Z-score: 1421.3 bits: 269.7 E(32554): 7.6e-73
Smith-Waterman score: 1081; 87.3% identity (94.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
:::::::::::::::::::::::::::::::::::::::::.:::::: :::::::.::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
.::: :::::::::::::..:::::::::::::.::::::...::.:: ::.:::::::
CCDS64 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
::: ::::::: :::::::::::::::::::::. .:::::::::::::::::.:::::
CCDS64 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KB7 LQKGLRRKD
::: :::::
CCDS64 LQKRLRRKD
>>CCDS34995.1 IFNA7 gene_id:3444|Hs108|chr9 (189 aa)
initn: 1061 init1: 1061 opt: 1061 Z-score: 1395.2 bits: 264.9 E(32554): 2.2e-71
Smith-Waterman score: 1061; 85.7% identity (93.7% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
:: ::::::.:::::::::::::::::::::: ::::::::::::::: :::::::..:
CCDS34 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
::.: :::.::::.::::..:::::::::::::.::::::...::.:: ::.:::::::
CCDS34 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
::: ::::::: ::::: :::::::::::::::: ::::::::::::::::::::::::
CCDS34 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN
130 140 150 160 170 180
pF1KB7 LQKGLRRKD
:.:::::::
CCDS34 LKKGLRRKD
>>CCDS6497.1 IFNA21 gene_id:3452|Hs108|chr9 (189 aa)
initn: 1074 init1: 1053 opt: 1053 Z-score: 1384.7 bits: 262.9 E(32554): 8.3e-71
Smith-Waterman score: 1053; 85.7% identity (92.6% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
:::::::::::::::::::::::::::::::::::::::::::::::: :::::::.:::
CCDS64 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
:::: :::::::::::::..::::::::::::::::::.:...::.:: :: :::::::
CCDS64 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
::: ::::::: ::: ::::::.:::::::::: ::::::::::::::::::::.:
CCDS64 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI
130 140 150 160 170 180
pF1KB7 LQKGLRRKD
.:. ::::.
CCDS64 FQERLRRKE
>>CCDS6501.1 IFNA14 gene_id:3448|Hs108|chr9 (189 aa)
initn: 1040 init1: 1040 opt: 1040 Z-score: 1367.7 bits: 259.8 E(32554): 7.3e-70
Smith-Waterman score: 1040; 83.6% identity (93.1% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
::: :.:.::..::: :: :::::.: :::::.:::.:.:.::: ::: :::::::.::
CCDS65 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
:::: :::::::::::::..:::.::::::::::.::::::::::.:::::::::.::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
::: ::::::: ::::::::::.::::::::::: ::::::::::::::::::.:::::
CCDS65 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN
130 140 150 160 170 180
pF1KB7 LQKGLRRKD
::: :::::
CCDS65 LQKRLRRKD
>>CCDS6502.1 IFNA5 gene_id:3442|Hs108|chr9 (189 aa)
initn: 1039 init1: 1039 opt: 1039 Z-score: 1366.4 bits: 259.5 E(32554): 8.7e-70
Smith-Waterman score: 1039; 82.5% identity (93.1% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
::: : ::::..::. ::::::::::::::::.:::.:...::::::: :::::::.:::
CCDS65 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
:::: :::::::::::::..::::::::::::::::::.:::::::::: ::.:::::::
CCDS65 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
::. ::::::. ::: ::::.:::::::::::: ::::::::::::::::::::.:.:
CCDS65 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN
130 140 150 160 170 180
pF1KB7 LQKGLRRKD
::. ::::.
CCDS65 LQERLRRKE
>>CCDS6506.1 IFNA2 gene_id:3440|Hs108|chr9 (188 aa)
initn: 989 init1: 654 opt: 991 Z-score: 1303.7 bits: 247.9 E(32554): 2.7e-66
Smith-Waterman score: 991; 81.0% identity (91.0% similar) in 189 aa overlap (1-189:1-188)
10 20 30 40 50 60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
:::.:.::.:.:::: :: ::.:::::::::::.::.:.::::: ::: :::::::.:::
CCDS65 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
:::: : :::::::..: ..:::::: :::::::::::::::::::::: ::.:::::::
CCDS65 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE
70 80 90 100 110
130 140 150 160 170 180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
::: : ::: : ::.:::::::::::::::::: ::::::::::::::::::::.:::
CCDS65 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN
120 130 140 150 160 170
pF1KB7 LQKGLRRKD
::..:: :.
CCDS65 LQESLRSKE
180
>>CCDS6504.1 IFNA6 gene_id:3443|Hs108|chr9 (189 aa)
initn: 975 init1: 975 opt: 975 Z-score: 1282.7 bits: 244.1 E(32554): 4e-65
Smith-Waterman score: 975; 79.9% identity (88.9% similar) in 189 aa overlap (1-189:1-189)
10 20 30 40 50 60
pF1KB7 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG
::: :.::::..::: :: ::: ::::::::::.::...::::: ::: :::::::.::
CCDS65 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE
:::: :::::::::.:::..::.::::::::::::::.:::: ::::.: ::.:::::::
CCDS65 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN
::: ::: : ::::::::::::::::::::: :::::::::::::::::::: : :
CCDS65 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN
130 140 150 160 170 180
pF1KB7 LQKGLRRKD
::. ::::.
CCDS65 LQERLRRKE
189 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 05:56:36 2016 done: Fri Nov 4 05:56:36 2016
Total Scan time: 1.940 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]