Result of FASTA (ccds) for
pFN21AB5018
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5018, 362 aa
1>>>pF1KB5018 362 - 362 aa - 362 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.0345+/-0.000896; mu= -2.3369+/- 0.055
mean_var=247.2334+/-50.124, 0's: 0 Z-trim(114.9): 10 B-trim: 0 in 0/54
Lambda= 0.081568
statistics sampled from 15477 (15484) to 15477 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.476), width: 16
Scan time: 3.380
The best scores are: opt bits E(32554)
CCDS59358.1 RAD23A gene_id:5886|Hs108|chr19 ( 362) 2344 288.1 8.2e-78
CCDS12289.1 RAD23A gene_id:5886|Hs108|chr19 ( 363) 2332 286.6 2.2e-77
CCDS59357.1 RAD23A gene_id:5886|Hs108|chr19 ( 308) 1731 215.9 3.7e-56
CCDS59138.1 RAD23B gene_id:5887|Hs108|chr9 ( 337) 694 93.9 2.2e-19
CCDS6769.1 RAD23B gene_id:5887|Hs108|chr9 ( 409) 467 67.2 2.8e-11
>>CCDS59358.1 RAD23A gene_id:5886|Hs108|chr19 (362 aa)
initn: 2344 init1: 2344 opt: 2344 Z-score: 1510.4 bits: 288.1 E(32554): 8.2e-78
Smith-Waterman score: 2344; 100.0% identity (100.0% similar) in 362 aa overlap (1-362:1-362)
10 20 30 40 50 60
pF1KB5 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 VAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAGENPLEFLRDQPQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 VAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAGENPLEFLRDQPQF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 QNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFD
310 320 330 340 350 360
pF1KB5 DE
::
CCDS59 DE
>>CCDS12289.1 RAD23A gene_id:5886|Hs108|chr19 (363 aa)
initn: 1444 init1: 1444 opt: 2332 Z-score: 1502.8 bits: 286.6 E(32554): 2.2e-77
Smith-Waterman score: 2332; 99.7% identity (99.7% similar) in 363 aa overlap (1-362:1-363)
10 20 30 40 50 60
pF1KB5 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERV
130 140 150 160 170 180
190 200 210 220 230
pF1KB5 VAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEA-GENPLEFLRDQPQ
:::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
CCDS12 VAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQPQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 FQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB5 VGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNF
310 320 330 340 350 360
360
pF1KB5 DDE
:::
CCDS12 DDE
>>CCDS59357.1 RAD23A gene_id:5886|Hs108|chr19 (308 aa)
initn: 1681 init1: 1444 opt: 1731 Z-score: 1121.6 bits: 215.9 E(32554): 3.7e-56
Smith-Waterman score: 1851; 84.6% identity (84.6% similar) in 363 aa overlap (1-362:1-308)
10 20 30 40 50 60
pF1KB5 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IRDYRIDEKNFVVVMVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAARE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERV
130 140 150 160 170 180
190 200 210 220 230
pF1KB5 VAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEA-GENPLEFLRDQPQ
:::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
CCDS59 VAALRASYNNPHRAVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQPQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB5 FQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE
:::::::::::::::::::::::::::::::
CCDS59 FQNMRQVIQQNPALLPALLQQLGQENPQLLQ-----------------------------
250 260 270
300 310 320 330 340 350
pF1KB5 VGAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNF
::::::::::::::::::::::::::::::::::
CCDS59 --------------------------LKALGFPESLVIQAYFACEKNENLAANFLLSQNF
280 290 300
360
pF1KB5 DDE
:::
CCDS59 DDE
>>CCDS59138.1 RAD23B gene_id:5887|Hs108|chr9 (337 aa)
initn: 1012 init1: 360 opt: 694 Z-score: 461.5 bits: 93.9 E(32554): 2.2e-19
Smith-Waterman score: 1020; 54.1% identity (72.9% similar) in 340 aa overlap (48-362:1-337)
20 30 40 50 60 70
pF1KB5 RMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYR-IDEKNFVVVMV
.. : .: .: . .. .:.
CCDS59 MVTKPKAVSTPAPATTQQSAPASTTAVTSS
10 20 30
80 90 100 110 120 130
pF1KB5 TKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPA-AREDKSPSEESAPTTSPE
: : ..:. . : .::..: : : :: ... :.: :: : ....:.:. : :
CCDS59 TTTTVAQAPTPVPALAPTSTPASIT---PASATASSEPAPASAAKQEKPAEKPAETPVAT
40 50 60 70 80
140 150 160 170 180 190
pF1KB5 SVSGSVPSSGSSGRE---EDAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPH
: ... .::.:.: :::.:.::::. ::.:.:::::::::::.:.::::::.:::
CCDS59 SPTATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPD
90 100 110 120 130 140
200 210 220 230
pF1KB5 RAVEYLLTGIPGSPE------PEH----GSVQESQVSEQPATE--------AGENPLEFL
::::::: ::::. : : . :. : : :. :: .: .:::::
CCDS59 RAVEYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFL
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB5 RDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADIS
:.:::::.:::.:::::.::::::::.:.::::::::::.:::.:::::::: : . .
CCDS59 RNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQG
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB5 DVEGE-VGAIGEEAP-QMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAAN
: :.:.: . .::::::::::::::::::::::::.::::::::::::::::::
CCDS59 GGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAAN
270 280 290 300 310 320
360
pF1KB5 FLLSQNFDDE
:::.::::..
CCDS59 FLLQQNFDED
330
>>CCDS6769.1 RAD23B gene_id:5887|Hs108|chr9 (409 aa)
initn: 1398 init1: 400 opt: 467 Z-score: 315.9 bits: 67.2 E(32554): 2.8e-11
Smith-Waterman score: 1261; 58.5% identity (74.9% similar) in 390 aa overlap (5-345:3-392)
10 20 30 40 50 60
pF1KB5 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
.:::::::::::: ..:.::::.::::::.:::.:::::::::::::::::.::.
CCDS67 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTA
10 20 30 40 50
70 80 90
pF1KB5 IRDYRIDEKNFVVVMVTKTKA----GQGT---SAP-----------------PEASPTAA
...:.::::::::::::: :: . .: ::: : :. :
CCDS67 LKEYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALA
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB5 PESS-TSFPPAPTSGMSHPPPA-AREDKSPSEESAPTTSPESVSGSVPSSGSSGRE---E
: :. .:. :: ... :.: :: : ....:.:. : : : ... .::.:.: :
CCDS67 PTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFE
120 130 140 150 160 170
160 170 180 190 200
pF1KB5 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPE----
::.:.::::. ::.:.:::::::::::.:.::::::.::: ::::::: ::::. :
CCDS67 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV
180 190 200 210 220 230
210 220 230 240 250
pF1KB5 --PEH----GSVQESQVSEQPATE--------AGENPLEFLRDQPQFQNMRQVIQQNPAL
: . :. : : :. :: .: .::::::.:::::.:::.:::::.:
CCDS67 VDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSL
240 250 260 270 280 290
260 270 280 290 300 310
pF1KB5 LPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE-VGAIGEEAP-QMN
:::::::.:.::::::::::.:::.:::::::: : . . : :.:.: . .::
CCDS67 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN
300 310 320 330 340 350
320 330 340 350 360
pF1KB5 YIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE
::::::::::::::::::::::.:::::::::::
CCDS67 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
360 370 380 390 400
362 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:21:09 2016 done: Fri Nov 4 03:21:09 2016
Total Scan time: 3.380 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]