Result of FASTA (omim) for pFN21AB4690
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4690, 895 aa
  1>>>pF1KB4690 895 - 895 aa - 895 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.6745+/-0.000454; mu= -14.7828+/- 0.028
 mean_var=582.7352+/-120.468, 0's: 0 Z-trim(125.1): 28  B-trim: 938 in 1/58
 Lambda= 0.053130
 statistics sampled from 48056 (48117) to 48056 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.564), width:  16
 Scan time: 17.770

The best scores are:                                      opt bits E(85289)
NP_006833 (OMIM: 605591) splicing factor 3B subuni ( 895) 6094 482.4 4.2e-135
XP_005273783 (OMIM: 605591) PREDICTED: splicing fa ( 894) 6077 481.1  1e-134
XP_011543042 (OMIM: 605591) PREDICTED: splicing fa ( 894) 6075 480.9 1.1e-134
XP_016872633 (OMIM: 605591) PREDICTED: splicing fa ( 893) 6058 479.6 2.8e-134


>>NP_006833 (OMIM: 605591) splicing factor 3B subunit 2   (895 aa)
 initn: 6094 init1: 6094 opt: 6094  Z-score: 2546.5  bits: 482.4 E(85289): 4.2e-135
Smith-Waterman score: 6094; 100.0% identity (100.0% similar) in 895 aa overlap (1-895:1-895)

               10        20        30        40        50        60
pF1KB4 MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB4 CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB4 EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB4 PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
              790       800       810       820       830       840

              850       860       870       880       890     
pF1KB4 TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
              850       860       870       880       890     

>>XP_005273783 (OMIM: 605591) PREDICTED: splicing factor  (894 aa)
 initn: 4601 init1: 4601 opt: 6077  Z-score: 2539.5  bits: 481.1 E(85289): 1e-134
Smith-Waterman score: 6077; 99.9% identity (99.9% similar) in 895 aa overlap (1-895:1-894)

               10        20        30        40        50        60
pF1KB4 MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMG
       :::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
XP_005 QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPR-AAPVGPVGPTPTVLPMG
              190       200       210       220        230         

              250       260       270       280       290       300
pF1KB4 APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KB4 RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS
     300       310       320       330       340       350         

              370       380       390       400       410       420
pF1KB4 DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
     360       370       380       390       400       410         

              430       440       450       460       470       480
pF1KB4 KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV
     420       430       440       450       460       470         

              490       500       510       520       530       540
pF1KB4 TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL
     480       490       500       510       520       530         

              550       560       570       580       590       600
pF1KB4 QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR
     540       550       560       570       580       590         

              610       620       630       640       650       660
pF1KB4 LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES
     600       610       620       630       640       650         

              670       680       690       700       710       720
pF1KB4 CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE
     660       670       680       690       700       710         

              730       740       750       760       770       780
pF1KB4 EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET
     720       730       740       750       760       770         

              790       800       810       820       830       840
pF1KB4 PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
     780       790       800       810       820       830         

              850       860       870       880       890     
pF1KB4 TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
     840       850       860       870       880       890    

>>XP_011543042 (OMIM: 605591) PREDICTED: splicing factor  (894 aa)
 initn: 5014 init1: 5014 opt: 6075  Z-score: 2538.7  bits: 480.9 E(85289): 1.1e-134
Smith-Waterman score: 6075; 99.9% identity (99.9% similar) in 895 aa overlap (1-895:1-894)

               10        20        30        40        50        60
pF1KB4 MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQ
       :::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
XP_011 MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQ-GDHSLKEHELLEQ
              130       140       150       160        170         

              190       200       210       220       230       240
pF1KB4 QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMG
     180       190       200       210       220       230         

              250       260       270       280       290       300
pF1KB4 APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KB4 RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS
     300       310       320       330       340       350         

              370       380       390       400       410       420
pF1KB4 DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
     360       370       380       390       400       410         

              430       440       450       460       470       480
pF1KB4 KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV
     420       430       440       450       460       470         

              490       500       510       520       530       540
pF1KB4 TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL
     480       490       500       510       520       530         

              550       560       570       580       590       600
pF1KB4 QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR
     540       550       560       570       580       590         

              610       620       630       640       650       660
pF1KB4 LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES
     600       610       620       630       640       650         

              670       680       690       700       710       720
pF1KB4 CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE
     660       670       680       690       700       710         

              730       740       750       760       770       780
pF1KB4 EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET
     720       730       740       750       760       770         

              790       800       810       820       830       840
pF1KB4 PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
     780       790       800       810       820       830         

              850       860       870       880       890     
pF1KB4 TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
     840       850       860       870       880       890    

>>XP_016872633 (OMIM: 605591) PREDICTED: splicing factor  (893 aa)
 initn: 4587 init1: 4587 opt: 6058  Z-score: 2531.6  bits: 479.6 E(85289): 2.8e-134
Smith-Waterman score: 6058; 99.8% identity (99.8% similar) in 895 aa overlap (1-895:1-893)

               10        20        30        40        50        60
pF1KB4 MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MATEHPEPPKAELQLPPPPPPGHYGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTRQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLGLPPLQPPPPPPPPPPGLGLGFP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQQGDHSLKEHELLEQ
       :::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
XP_016 MAHPPNLGPPPPLRVGEPVALSEEERLKLAQQQAALLMQQEERAKQ-GDHSLKEHELLEQ
              130       140       150       160        170         

              190       200       210       220       230       240
pF1KB4 QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPRVAAPVGPVGPTPTVLPMG
       :::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::
XP_016 QKRAAVLLEQERQQEIAKMGTPVPRPPQDMGQIGVRTPLGPR-AAPVGPVGPTPTVLPMG
     180       190       200       210       220        230        

              250       260       270       280       290       300
pF1KB4 APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APVPRPRGPPPPPGDENREMDDPSVGPKIPQALEKILQLKESRQEEMNSQQEEEEMETDA
      240       250       260       270       280       290        

              310       320       330       340       350       360
pF1KB4 RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSSLGQSASETEEDTVSVSKKEKNRKRRNRKKKKKPQRVRGVSSESSGDREKDSTRSRGS
      300       310       320       330       340       350        

              370       380       390       400       410       420
pF1KB4 DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEKEKEPEKLDKLENSAAPK
      360       370       380       390       400       410        

              430       440       450       460       470       480
pF1KB4 KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVAELKQLVARPDVVEMHDV
      420       430       440       450       460       470        

              490       500       510       520       530       540
pF1KB4 TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFELPDFIKRTGIQEMREAL
      480       490       500       510       520       530        

              550       560       570       580       590       600
pF1KB4 QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPKLTIHGDLYYEGKEFETR
      540       550       560       570       580       590        

              610       620       630       640       650       660
pF1KB4 LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPPSYPNLKIPGLNSPIPES
      600       610       620       630       640       650        

              670       680       690       700       710       720
pF1KB4 CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEIDRTPWGELEPSDEESSE
      660       670       680       690       700       710        

              730       740       750       760       770       780
pF1KB4 EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSET
      720       730       740       750       760       770        

              790       800       810       820       830       840
pF1KB4 PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAM
      780       790       800       810       820       830        

              850       860       870       880       890     
pF1KB4 TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF
      840       850       860       870       880       890   




895 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:10:59 2016 done: Fri Nov  4 03:11:02 2016
 Total Scan time: 17.770 Total Display time:  0.120

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com