Result of FASTA (omim) for
pFN21AB4600
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4600, 306 aa
1>>>pF1KB4600 306 - 306 aa - 306 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8228+/-0.00037; mu= 8.1368+/- 0.024
mean_var=245.6131+/-49.910, 0's: 0 Z-trim(122.0): 63 B-trim: 1157 in 1/58
Lambda= 0.081837
statistics sampled from 39431 (39502) to 39431 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.463), width: 16
Scan time: 9.080
The best scores are: opt bits E(85289)
XP_011535013 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 1978 245.7 8.4e-65
XP_011535012 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 1978 245.7 8.4e-65
XP_011535011 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 1978 245.7 8.4e-65
XP_011535010 (OMIM: 164020) PREDICTED: heterogeneo ( 306) 1978 245.7 8.4e-65
NP_112604 (OMIM: 164020) heterogeneous nuclear rib ( 306) 1978 245.7 8.4e-65
NP_001070910 (OMIM: 164020) heterogeneous nuclear ( 306) 1978 245.7 8.4e-65
XP_011535014 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 1224 156.7 5.2e-38
NP_001070911 (OMIM: 164020) heterogeneous nuclear ( 293) 1224 156.7 5.2e-38
XP_016876742 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 1224 156.7 5.2e-38
NP_004491 (OMIM: 164020) heterogeneous nuclear rib ( 293) 1224 156.7 5.2e-38
XP_006720188 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 1224 156.7 5.2e-38
XP_016876741 (OMIM: 164020) PREDICTED: heterogeneo ( 293) 1224 156.7 5.2e-38
XP_016868550 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 907 119.3 9.5e-27
XP_016868554 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 907 119.3 9.5e-27
XP_016868552 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 907 119.3 9.5e-27
XP_016868551 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 907 119.3 9.5e-27
NP_001093863 (OMIM: 614648) RNA-binding Raly-like ( 291) 907 119.3 9.5e-27
XP_016868549 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 907 119.3 9.5e-27
XP_016868548 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 907 119.3 9.5e-27
NP_001093862 (OMIM: 614648) RNA-binding Raly-like ( 291) 907 119.3 9.5e-27
XP_016868553 (OMIM: 614648) PREDICTED: RNA-binding ( 291) 907 119.3 9.5e-27
NP_776247 (OMIM: 614648) RNA-binding Raly-like pro ( 291) 907 119.3 9.5e-27
NP_001093861 (OMIM: 614648) RNA-binding Raly-like ( 304) 907 119.3 9.7e-27
XP_016868565 (OMIM: 614648) PREDICTED: RNA-binding ( 235) 861 113.7 3.6e-25
XP_016868568 (OMIM: 614648) PREDICTED: RNA-binding ( 235) 861 113.7 3.6e-25
XP_016868566 (OMIM: 614648) PREDICTED: RNA-binding ( 235) 861 113.7 3.6e-25
XP_016868567 (OMIM: 614648) PREDICTED: RNA-binding ( 235) 861 113.7 3.6e-25
XP_016868562 (OMIM: 614648) PREDICTED: RNA-binding ( 248) 861 113.8 3.7e-25
XP_016868563 (OMIM: 614648) PREDICTED: RNA-binding ( 238) 857 113.3 5e-25
XP_016868561 (OMIM: 614648) PREDICTED: RNA-binding ( 251) 857 113.3 5.2e-25
XP_016868560 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 565 78.9 1.3e-14
XP_016868559 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 565 78.9 1.3e-14
NP_001274172 (OMIM: 614648) RNA-binding Raly-like ( 280) 565 78.9 1.3e-14
XP_016868555 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 565 78.9 1.3e-14
XP_016868558 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 565 78.9 1.3e-14
XP_016868556 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 565 78.9 1.3e-14
XP_016868557 (OMIM: 614648) PREDICTED: RNA-binding ( 280) 565 78.9 1.3e-14
XP_016868547 (OMIM: 614648) PREDICTED: RNA-binding ( 293) 565 78.9 1.4e-14
XP_011515764 (OMIM: 614648) PREDICTED: RNA-binding ( 227) 546 76.5 5.5e-14
XP_016868569 (OMIM: 614648) PREDICTED: RNA-binding ( 227) 546 76.5 5.5e-14
XP_016868571 (OMIM: 614648) PREDICTED: RNA-binding ( 224) 543 76.2 6.9e-14
XP_016868570 (OMIM: 614648) PREDICTED: RNA-binding ( 224) 543 76.2 6.9e-14
NP_057951 (OMIM: 614663) RNA-binding protein Raly ( 306) 545 76.6 7.2e-14
XP_011526997 (OMIM: 614663) PREDICTED: RNA-binding ( 306) 545 76.6 7.2e-14
XP_005260391 (OMIM: 614663) PREDICTED: RNA-binding ( 306) 545 76.6 7.2e-14
XP_011526996 (OMIM: 614663) PREDICTED: RNA-binding ( 306) 545 76.6 7.2e-14
XP_016883220 (OMIM: 614663) PREDICTED: RNA-binding ( 306) 545 76.6 7.2e-14
XP_016868564 (OMIM: 614648) PREDICTED: RNA-binding ( 237) 543 76.2 7.2e-14
XP_005260393 (OMIM: 614663) PREDICTED: RNA-binding ( 290) 506 71.9 1.7e-12
NP_031393 (OMIM: 614663) RNA-binding protein Raly ( 290) 506 71.9 1.7e-12
>>XP_011535013 (OMIM: 164020) PREDICTED: heterogeneous n (306 aa)
initn: 1978 init1: 1978 opt: 1978 Z-score: 1284.4 bits: 245.7 E(85289): 8.4e-65
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
250 260 270 280 290 300
pF1KB4 NGEDDS
::::::
XP_011 NGEDDS
>>XP_011535012 (OMIM: 164020) PREDICTED: heterogeneous n (306 aa)
initn: 1978 init1: 1978 opt: 1978 Z-score: 1284.4 bits: 245.7 E(85289): 8.4e-65
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
250 260 270 280 290 300
pF1KB4 NGEDDS
::::::
XP_011 NGEDDS
>>XP_011535011 (OMIM: 164020) PREDICTED: heterogeneous n (306 aa)
initn: 1978 init1: 1978 opt: 1978 Z-score: 1284.4 bits: 245.7 E(85289): 8.4e-65
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
250 260 270 280 290 300
pF1KB4 NGEDDS
::::::
XP_011 NGEDDS
>>XP_011535010 (OMIM: 164020) PREDICTED: heterogeneous n (306 aa)
initn: 1978 init1: 1978 opt: 1978 Z-score: 1284.4 bits: 245.7 E(85289): 8.4e-65
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
250 260 270 280 290 300
pF1KB4 NGEDDS
::::::
XP_011 NGEDDS
>>NP_112604 (OMIM: 164020) heterogeneous nuclear ribonuc (306 aa)
initn: 1978 init1: 1978 opt: 1978 Z-score: 1284.4 bits: 245.7 E(85289): 8.4e-65
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
250 260 270 280 290 300
pF1KB4 NGEDDS
::::::
NP_112 NGEDDS
>>NP_001070910 (OMIM: 164020) heterogeneous nuclear ribo (306 aa)
initn: 1978 init1: 1978 opt: 1978 Z-score: 1284.4 bits: 245.7 E(85289): 8.4e-65
Smith-Waterman score: 1978; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
250 260 270 280 290 300
pF1KB4 NGEDDS
::::::
NP_001 NGEDDS
>>XP_011535014 (OMIM: 164020) PREDICTED: heterogeneous n (293 aa)
initn: 1224 init1: 1224 opt: 1224 Z-score: 803.5 bits: 156.7 E(85289): 5.2e-38
Smith-Waterman score: 1856; 95.8% identity (95.8% similar) in 306 aa overlap (1-306:1-293)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS-------------
70 80 90 100
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
230 240 250 260 270 280
pF1KB4 NGEDDS
::::::
XP_011 NGEDDS
290
>>NP_001070911 (OMIM: 164020) heterogeneous nuclear ribo (293 aa)
initn: 1224 init1: 1224 opt: 1224 Z-score: 803.5 bits: 156.7 E(85289): 5.2e-38
Smith-Waterman score: 1856; 95.8% identity (95.8% similar) in 306 aa overlap (1-306:1-293)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS-------------
70 80 90 100
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
230 240 250 260 270 280
pF1KB4 NGEDDS
::::::
NP_001 NGEDDS
290
>>XP_016876742 (OMIM: 164020) PREDICTED: heterogeneous n (293 aa)
initn: 1224 init1: 1224 opt: 1224 Z-score: 803.5 bits: 156.7 E(85289): 5.2e-38
Smith-Waterman score: 1856; 95.8% identity (95.8% similar) in 306 aa overlap (1-306:1-293)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS-------------
70 80 90 100
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
230 240 250 260 270 280
pF1KB4 NGEDDS
::::::
XP_016 NGEDDS
290
>>NP_004491 (OMIM: 164020) heterogeneous nuclear ribonuc (293 aa)
initn: 1224 init1: 1224 opt: 1224 Z-score: 803.5 bits: 156.7 E(85289): 5.2e-38
Smith-Waterman score: 1856; 95.8% identity (95.8% similar) in 306 aa overlap (1-306:1-293)
10 20 30 40 50 60
pF1KB4 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPSPLLSS
:::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGS-------------
70 80 90 100
130 140 150 160 170 180
pF1KB4 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQR
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GSSKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKSEEEQSSS
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB4 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SVKKDETNVKMESEGGADDSAEEGDLLDDDDNEDRGDDQLELIKDDEKEAEEGEDDRDSA
230 240 250 260 270 280
pF1KB4 NGEDDS
::::::
NP_004 NGEDDS
290
306 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:03:26 2016 done: Fri Nov 4 03:03:27 2016
Total Scan time: 9.080 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]