Result of FASTA (ccds) for pFN21AB3955
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3955, 454 aa
  1>>>pF1KB3955 454 - 454 aa - 454 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0891+/-0.000986; mu= -4.1874+/- 0.059
 mean_var=247.8571+/-50.256, 0's: 0 Z-trim(113.3): 75  B-trim: 0 in 0/52
 Lambda= 0.081465
 statistics sampled from 13871 (13941) to 13871 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.428), width:  16
 Scan time:  3.070

The best scores are:                                      opt bits E(32554)
CCDS55087.1 ETV1 gene_id:2115|Hs108|chr7           ( 454) 3248 394.7  1e-109
CCDS55088.1 ETV1 gene_id:2115|Hs108|chr7           ( 477) 1905 236.9 3.5e-62
CCDS55085.1 ETV1 gene_id:2115|Hs108|chr7           ( 437) 1492 188.3 1.3e-47
CCDS55084.1 ETV1 gene_id:2115|Hs108|chr7           ( 374) 1443 182.5 6.4e-46
CCDS55083.1 ETV1 gene_id:2115|Hs108|chr7           ( 419) 1371 174.1 2.5e-43
CCDS55086.1 ETV1 gene_id:2115|Hs108|chr7           ( 459) 1365 173.4 4.4e-43
CCDS33906.1 ETV5 gene_id:2119|Hs108|chr3           ( 510) 1139 146.8 4.7e-35
CCDS58553.1 ETV4 gene_id:2118|Hs108|chr17          ( 445) 1084 140.3 3.7e-33
CCDS11465.1 ETV4 gene_id:2118|Hs108|chr17          ( 484) 1084 140.4   4e-33
CCDS59292.1 ETV4 gene_id:2118|Hs108|chr17          ( 207) 1007 131.1 1.1e-30


>>CCDS55087.1 ETV1 gene_id:2115|Hs108|chr7                (454 aa)
 initn: 3248 init1: 3248 opt: 3248  Z-score: 2083.1  bits: 394.7 E(32554): 1e-109
Smith-Waterman score: 3248; 99.8% identity (100.0% similar) in 454 aa overlap (1-454:1-454)

               10        20        30        40        50        60
pF1KB3 MDGFYDQQVPYMVTNSQRGRNCNEKPTNVRKRKFINRDLAHDSEELFQDLSQLQETWLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDGFYDQQVPYMVTNSQRGRNCNEKPTNVRKRKFINRDLAHDSEELFQDLSQLQETWLAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AQVPDNDEQFVPDYQAESLAFHGLPLKIKKEPHSPCSEIGSACSQEQPFKFSYGEKCLYN
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS55 AQVPDNDEQFVPDYQAESLAFHGLPLKIKKEPHSPCSEISSACSQEQPFKFSYGEKCLYN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPDSSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPDSSY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 PMDHRFRRQLSEPCNSFPPLPTMPREGRPMYQRQMSEPNIPFPPQGFKQEYHDPVYEHNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PMDHRFRRQLSEPCNSFPPLPTMPREGRPMYQRQMSEPNIPFPPQGFKQEYHDPVYEHNT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 MVGSAASQSFPPPLMIKQEPRDFAYDSGCMFEKGPRQFYDDTCVVPEKFDGDIKQEPGMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MVGSAASQSFPPPLMIKQEPRDFAYDSGCMFEKGPRQFYDDTCVVPEKFDGDIKQEPGMY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 REGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 REGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 MNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHIN
              370       380       390       400       410       420

              430       440       450    
pF1KB3 EEDTVPLSHFDESMAYMPEGGCCNPHPYNEGYVY
       ::::::::::::::::::::::::::::::::::
CCDS55 EEDTVPLSHFDESMAYMPEGGCCNPHPYNEGYVY
              430       440       450    

>>CCDS55088.1 ETV1 gene_id:2115|Hs108|chr7                (477 aa)
 initn: 3234 init1: 1905 opt: 1905  Z-score: 1229.8  bits: 236.9 E(32554): 3.5e-62
Smith-Waterman score: 3192; 95.0% identity (95.2% similar) in 477 aa overlap (1-454:1-477)

               10        20        30        40        50        60
pF1KB3 MDGFYDQQVPYMVTNSQRGRNCNEKPTNVRKRKFINRDLAHDSEELFQDLSQLQETWLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDGFYDQQVPYMVTNSQRGRNCNEKPTNVRKRKFINRDLAHDSEELFQDLSQLQETWLAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AQVPDNDEQFVPDYQAESLAFHGLPLKIKKEPHSPCSEIGSACSQEQPFKFSYGEKCLYN
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS55 AQVPDNDEQFVPDYQAESLAFHGLPLKIKKEPHSPCSEISSACSQEQPFKFSYGEKCLYN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPDSSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPDSSY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 PMDHRFRRQLSEPCNSFPPLPTMPREGRPMYQRQMSEPNIPFPPQGFKQEYHDPVYEHNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PMDHRFRRQLSEPCNSFPPLPTMPREGRPMYQRQMSEPNIPFPPQGFKQEYHDPVYEHNT
              190       200       210       220       230       240

              250       260                              270       
pF1KB3 MVGSAASQSFPPPLMIKQEPRDFAYDS-----------------------GCMFEKGPRQ
       :::::::::::::::::::::::::::                       ::::::::::
CCDS55 MVGSAASQSFPPPLMIKQEPRDFAYDSEVPSCHSIYMRQEGFLAHPSRTEGCMFEKGPRQ
              250       260       270       280       290       300

       280       290       300       310       320       330       
pF1KB3 FYDDTCVVPEKFDGDIKQEPGMYREGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FYDDTCVVPEKFDGDIKQEPGMYREGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRG
              310       320       330       340       350       360

       340       350       360       370       380       390       
pF1KB3 MEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEA
              370       380       390       400       410       420

       400       410       420       430       440       450    
pF1KB3 LFSMAFPDNQRPLLKTDMERHINEEDTVPLSHFDESMAYMPEGGCCNPHPYNEGYVY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LFSMAFPDNQRPLLKTDMERHINEEDTVPLSHFDESMAYMPEGGCCNPHPYNEGYVY
              430       440       450       460       470       

>>CCDS55085.1 ETV1 gene_id:2115|Hs108|chr7                (437 aa)
 initn: 2821 init1: 1492 opt: 1492  Z-score: 968.0  bits: 188.3 E(32554): 1.3e-47
Smith-Waterman score: 2779; 94.2% identity (94.5% similar) in 417 aa overlap (61-454:21-437)

               40        50        60        70        80        90
pF1KB3 KRKFINRDLAHDSEELFQDLSQLQETWLAEAQVPDNDEQFVPDYQAESLAFHGLPLKIKK
                                     ::::::::::::::::::::::::::::::
CCDS55           MLQDLSASVFFPPCSQHRTLAQVPDNDEQFVPDYQAESLAFHGLPLKIKK
                         10        20        30        40        50

              100       110       120       130       140       150
pF1KB3 EPHSPCSEIGSACSQEQPFKFSYGEKCLYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHH
       :::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EPHSPCSEISSACSQEQPFKFSYGEKCLYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHH
               60        70        80        90       100       110

              160       170       180       190       200       210
pF1KB3 ASPNSTHTPKPDRAFPAHLPPSQSIPDSSYPMDHRFRRQLSEPCNSFPPLPTMPREGRPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ASPNSTHTPKPDRAFPAHLPPSQSIPDSSYPMDHRFRRQLSEPCNSFPPLPTMPREGRPM
              120       130       140       150       160       170

              220       230       240       250       260          
pF1KB3 YQRQMSEPNIPFPPQGFKQEYHDPVYEHNTMVGSAASQSFPPPLMIKQEPRDFAYDS---
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS55 YQRQMSEPNIPFPPQGFKQEYHDPVYEHNTMVGSAASQSFPPPLMIKQEPRDFAYDSEVP
              180       190       200       210       220       230

                           270       280       290       300       
pF1KB3 --------------------GCMFEKGPRQFYDDTCVVPEKFDGDIKQEPGMYREGPTYQ
                           ::::::::::::::::::::::::::::::::::::::::
CCDS55 SCHSIYMRQEGFLAHPSRTEGCMFEKGPRQFYDDTCVVPEKFDGDIKQEPGMYREGPTYQ
              240       250       260       270       280       290

       310       320       330       340       350       360       
pF1KB3 RRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLS
              300       310       320       330       340       350

       370       380       390       400       410       420       
pF1KB3 RSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHINEEDTVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHINEEDTVPL
              360       370       380       390       400       410

       430       440       450    
pF1KB3 SHFDESMAYMPEGGCCNPHPYNEGYVY
       :::::::::::::::::::::::::::
CCDS55 SHFDESMAYMPEGGCCNPHPYNEGYVY
              420       430       

>>CCDS55084.1 ETV1 gene_id:2115|Hs108|chr7                (374 aa)
 initn: 2348 init1: 1343 opt: 1443  Z-score: 937.9  bits: 182.5 E(32554): 6.4e-46
Smith-Waterman score: 2184; 79.1% identity (79.4% similar) in 417 aa overlap (61-454:21-374)

               40        50        60        70        80        90
pF1KB3 KRKFINRDLAHDSEELFQDLSQLQETWLAEAQVPDNDEQFVPDYQAESLAFHGLPLKIKK
                                     ::::::::::::::::::::::::::::::
CCDS55           MLQDLSASVFFPPCSQHRTLAQVPDNDEQFVPDYQAESLAFHGLPLKIKK
                         10        20        30        40        50

              100       110       120       130       140       150
pF1KB3 EPHSPCSEIGSACSQEQPFKFSYGEKCLYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHH
       :::::::::.:::::::::::::::::::::                             
CCDS55 EPHSPCSEISSACSQEQPFKFSYGEKCLYNV-----------------------------
               60        70        80                              

              160       170       180       190       200       210
pF1KB3 ASPNSTHTPKPDRAFPAHLPPSQSIPDSSYPMDHRFRRQLSEPCNSFPPLPTMPREGRPM
                                         ::::::::::::::::::::::::::
CCDS55 ----------------------------------RFRRQLSEPCNSFPPLPTMPREGRPM
                                                90       100       

              220       230       240       250       260          
pF1KB3 YQRQMSEPNIPFPPQGFKQEYHDPVYEHNTMVGSAASQSFPPPLMIKQEPRDFAYDS---
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
CCDS55 YQRQMSEPNIPFPPQGFKQEYHDPVYEHNTMVGSAASQSFPPPLMIKQEPRDFAYDSEVP
       110       120       130       140       150       160       

                           270       280       290       300       
pF1KB3 --------------------GCMFEKGPRQFYDDTCVVPEKFDGDIKQEPGMYREGPTYQ
                           ::::::::::::::::::::::::::::::::::::::::
CCDS55 SCHSIYMRQEGFLAHPSRTEGCMFEKGPRQFYDDTCVVPEKFDGDIKQEPGMYREGPTYQ
       170       180       190       200       210       220       

       310       320       330       340       350       360       
pF1KB3 RRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLS
       230       240       250       260       270       280       

       370       380       390       400       410       420       
pF1KB3 RSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHINEEDTVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHINEEDTVPL
       290       300       310       320       330       340       

       430       440       450    
pF1KB3 SHFDESMAYMPEGGCCNPHPYNEGYVY
       :::::::::::::::::::::::::::
CCDS55 SHFDESMAYMPEGGCCNPHPYNEGYVY
       350       360       370    

>>CCDS55083.1 ETV1 gene_id:2115|Hs108|chr7                (419 aa)
 initn: 2692 init1: 1363 opt: 1371  Z-score: 891.4  bits: 174.1 E(32554): 2.5e-43
Smith-Waterman score: 2658; 92.4% identity (93.2% similar) in 409 aa overlap (70-454:11-419)

      40        50        60        70         80        90        
pF1KB3 AHDSEELFQDLSQLQETWLAEAQVPDNDEQFVPDYQAESL-AFHGLPLKIKKEPHSPCSE
                                     : :  : ..: :::::::::::::::::::
CCDS55                     MLQDLSASVFFPPCSQHRTLVAFHGLPLKIKKEPHSPCSE
                                   10        20        30        40

      100       110       120       130       140       150        
pF1KB3 IGSACSQEQPFKFSYGEKCLYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHT
       :.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ISSACSQEQPFKFSYGEKCLYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHT
               50        60        70        80        90       100

      160       170       180       190       200       210        
pF1KB3 PKPDRAFPAHLPPSQSIPDSSYPMDHRFRRQLSEPCNSFPPLPTMPREGRPMYQRQMSEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PKPDRAFPAHLPPSQSIPDSSYPMDHRFRRQLSEPCNSFPPLPTMPREGRPMYQRQMSEP
              110       120       130       140       150       160

      220       230       240       250       260                  
pF1KB3 NIPFPPQGFKQEYHDPVYEHNTMVGSAASQSFPPPLMIKQEPRDFAYDS-----------
       :::::::::::::::::::::::::::::::::::::::::::::::::           
CCDS55 NIPFPPQGFKQEYHDPVYEHNTMVGSAASQSFPPPLMIKQEPRDFAYDSEVPSCHSIYMR
              170       180       190       200       210       220

                   270       280       290       300       310     
pF1KB3 ------------GCMFEKGPRQFYDDTCVVPEKFDGDIKQEPGMYREGPTYQRRGSLQLW
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QEGFLAHPSRTEGCMFEKGPRQFYDDTCVVPEKFDGDIKQEPGMYREGPTYQRRGSLQLW
              230       240       250       260       270       280

         320       330       340       350       360       370     
pF1KB3 QFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYE
              290       300       310       320       330       340

         380       390       400       410       420       430     
pF1KB3 KGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHINEEDTVPLSHFDESMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHINEEDTVPLSHFDESMA
              350       360       370       380       390       400

         440       450    
pF1KB3 YMPEGGCCNPHPYNEGYVY
       :::::::::::::::::::
CCDS55 YMPEGGCCNPHPYNEGYVY
              410         

>>CCDS55086.1 ETV1 gene_id:2115|Hs108|chr7                (459 aa)
 initn: 3091 init1: 1363 opt: 1365  Z-score: 887.0  bits: 173.4 E(32554): 4.4e-43
Smith-Waterman score: 3017; 91.0% identity (91.4% similar) in 477 aa overlap (1-454:1-459)

               10        20        30        40        50        60
pF1KB3 MDGFYDQQVPYMVTNSQRGRNCNEKPTNVRKRKFINRDLAHDSEELFQDLSQLQETWLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MDGFYDQQVPYMVTNSQRGRNCNEKPTNVRKRKFINRDLAHDSEELFQDLSQLQETWLAE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AQVPDNDEQFVPDYQAESLAFHGLPLKIKKEPHSPCSEIGSACSQEQPFKFSYGEKCLYN
                         .::::::::::::::::::::.::::::::::::::::::::
CCDS55 ------------------VAFHGLPLKIKKEPHSPCSEISSACSQEQPFKFSYGEKCLYN
                                 70        80        90       100  

              130       140       150       160       170       180
pF1KB3 VSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPDSSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPDSSY
            110       120       130       140       150       160  

              190       200       210       220       230       240
pF1KB3 PMDHRFRRQLSEPCNSFPPLPTMPREGRPMYQRQMSEPNIPFPPQGFKQEYHDPVYEHNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PMDHRFRRQLSEPCNSFPPLPTMPREGRPMYQRQMSEPNIPFPPQGFKQEYHDPVYEHNT
            170       180       190       200       210       220  

              250       260                              270       
pF1KB3 MVGSAASQSFPPPLMIKQEPRDFAYDS-----------------------GCMFEKGPRQ
       :::::::::::::::::::::::::::                       ::::::::::
CCDS55 MVGSAASQSFPPPLMIKQEPRDFAYDSEVPSCHSIYMRQEGFLAHPSRTEGCMFEKGPRQ
            230       240       250       260       270       280  

       280       290       300       310       320       330       
pF1KB3 FYDDTCVVPEKFDGDIKQEPGMYREGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FYDDTCVVPEKFDGDIKQEPGMYREGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRG
            290       300       310       320       330       340  

       340       350       360       370       380       390       
pF1KB3 MEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEA
            350       360       370       380       390       400  

       400       410       420       430       440       450    
pF1KB3 LFSMAFPDNQRPLLKTDMERHINEEDTVPLSHFDESMAYMPEGGCCNPHPYNEGYVY
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LFSMAFPDNQRPLLKTDMERHINEEDTVPLSHFDESMAYMPEGGCCNPHPYNEGYVY
            410       420       430       440       450         

>>CCDS33906.1 ETV5 gene_id:2119|Hs108|chr3                (510 aa)
 initn: 1740 init1: 1045 opt: 1139  Z-score: 742.8  bits: 146.8 E(32554): 4.7e-35
Smith-Waterman score: 1894; 59.3% identity (74.4% similar) in 492 aa overlap (25-454:25-510)

               10        20        30        40        50        60
pF1KB3 MDGFYDQQVPYMVTNSQRGRNCNEKPTNVRKRKFINRDLAHDSEELFQDLSQLQETWLAE
                               .:.  :::::.. ::::::::::::::::::.::::
CCDS33 MDGFYDQQVPFMVPGKSRSEECRGRPVIDRKRKFLDTDLAHDSEELFQDLSQLQEAWLAE
               10        20        30        40        50        60

               70        80         90       100       110         
pF1KB3 AQVPDNDEQFVPDYQAESLAFHGLP-LKIKKEPHSPCSEIGSACSQEQPFKFSYGEKCLY
       ::::: :::::::.:...:..:. :  :::.: ::: ::. :.::.:: .  .:::::::
CCDS33 AQVPD-DEQFVPDFQSDNLVLHAPPPTKIKRELHSPSSEL-SSCSHEQALGANYGEKCLY
                70        80        90        100       110        

     120       130       140                       150             
pF1KB3 NVSAYDQKPQVGMRPSNPPTPSSTPVSPLH----------------HA------------
       :  :::.::  :..: .:::   ::.:: :                ::            
CCDS33 NYCAYDRKPPSGFKPLTPPT---TPLSPTHQNPLFPPPQATLPTSGHAPAAGPVQGVGPA
      120       130          140       150       160       170     

              160        170             180       190       200   
pF1KB3 -SPNSTHTPKPDR-AFPAHLPPSQSI------PDSSYPMDHRFRRQLSEPCNSFPPLPTM
        .:.:   : :.. .: .  :: : .      :...:: ..::.:::::::. ::: : .
CCDS33 PAPHSLPEPGPQQQTFAVPRPPHQPLQMPKMMPENQYPSEQRFQRQLSEPCHPFPPQPGV
         180       190       200       210       220       230     

           210       220          230       240         250        
pF1KB3 PREGRPMYQRQMSEPNIPF---PPQGFKQEYHDPVYEHNT--MVGSAASQSFPPPLMIKQ
       : ..:: :.:::::: .:    ::::::::::::.:::..  : :  : ..:  :. :::
CCDS33 PGDNRPSYHRQMSEPIVPAAPPPPQGFKQEYHDPLYEHGVPGMPGPPA-HGFQSPMGIKQ
         240       250       260       270       280        290    

      260                           270       280       290        
pF1KB3 EPRDFAYDS--------------------GCMFEKGPRQFYDDTCVVPEKFDGDIKQEPG
       ::::.  ::                    :  .:: :: ..::::::::...: .:::: 
CCDS33 EPRDYCVDSEVPNCQSSYMRGGYFSSSHEGFSYEKDPRLYFDDTCVVPERLEGKVKQEPT
          300       310       320       330       340       350    

      300       310       320       330       340       350        
pF1KB3 MYREGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNR
       :::::: ::::::::::::::.:::::.:.::::::::::::::::::::::::::::::
CCDS33 MYREGPPYQRRGSLQLWQFLVTLLDDPANAHFIAWTGRGMEFKLIEPEEVARRWGIQKNR
          360       370       380       390       400       410    

      360       370       380       390       400       410        
pF1KB3 PAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERH
       :::::::::::::::::::::::::::::::::::::.:::::::::::::.::.. : :
CCDS33 PAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPDALFSMAFPDNQRPFLKAESECH
          420       430       440       450       460       470    

      420       430       440       450    
pF1KB3 INEEDTVPLSHFDESMAYMPEGGCCNPHPYNEGYVY
       ..::::.::.::..: ::. .   :.  :: ::..:
CCDS33 LSEEDTLPLTHFEDSPAYLLDMDRCSSLPYAEGFAY
          480       490       500       510

>>CCDS58553.1 ETV4 gene_id:2118|Hs108|chr17               (445 aa)
 initn: 1517 init1: 868 opt: 1084  Z-score: 708.7  bits: 140.3 E(32554): 3.7e-33
Smith-Waterman score: 1554; 56.0% identity (72.8% similar) in 448 aa overlap (42-454:10-445)

              20        30        40        50        60        70 
pF1KB3 MVTNSQRGRNCNEKPTNVRKRKFINRDLAHDSEELFQDLSQLQETWLAEAQVPDNDEQFV
                                     :::.::::::..::::::::::::.:::::
CCDS58                      MDPGSLPPLDSEDLFQDLSHFQETWLAEAQVPDSDEQFV
                                    10        20        30         

              80        90       100       110       120       130 
pF1KB3 PDYQAESLAFHGLPLKIKKEPHSPCSEIGSACSQEQPFKFSYGEKCLYNVSAYDQKPQVG
       ::...:.::::.   .:::::.:: .. . .::.. :. . .::.:::. ::::   :..
CCDS58 PDFHSENLAFHSPTTRIKKEPQSPRTDPALSCSRKPPLPYHHGEQCLYS-SAYDPPRQIA
      40        50        60        70        80         90        

             140       150       160       170       180           
pF1KB3 MRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQSIPDSSYPMDHR--FRRQ
       ..   : . ...:..:. .:          .: :      ::  :  .:  .:   :.. 
CCDS58 IKSPAPGALGQSPLQPFPRAE---------QRNFLRSSGTSQPHPGHGYLGEHSSVFQQP
      100       110                120       130       140         

     190       200       210        220       230       240        
pF1KB3 LSEPCNSFPPLPTMPREGRPM-YQRQMSEPNIPFPPQGFKQEYHDPVYEHNTMV----GS
       : . :.::       ::  :  ::.:.:::  :.: :.::::::::.::.  .     :.
CCDS58 L-DICHSFTS-QGGGREPLPAPYQHQLSEPCPPYPQQSFKQEYHDPLYEQAGQPAVDQGG
     150         160       170       180       190       200       

          250        260          270                              
pF1KB3 AASQSFPPP-LMIKQEPRDFAYDS---GCM----------------------FEKGPRQF
       . .. .:   ..::::  ::::::   ::                       .::  : :
CCDS58 VNGHRYPGAGVVIKQEQTDFAYDSDVTGCASMYLHTEGFSGPSPGDGAMGYGYEKPLRPF
       210       220       230       240       250       260       

      280       290        300       310       320       330       
pF1KB3 YDDTCVVPEKFDGDIKQEP-GMYREGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRG
        ::.:::::::.::::::  : .:::: :::::.::::::::::::::.:.:::::::::
CCDS58 PDDVCVVPEKFEGDIKQEGVGAFREGPPYQRRGALQLWQFLVALLDDPTNAHFIAWTGRG
       270       280       290       300       310       320       

       340       350       360       370       380       390       
pF1KB3 MEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEA
       ::::::::::::: ::::::::::::::::::::::::::::::::::::::::::.:::
CCDS58 MEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPEA
       330       340       350       360       370       380       

       400       410       420       430        440       450    
pF1KB3 LFSMAFPDNQRPLLKTDMERHINEEDTVPLSHFDESMAYMPE-GGCCNPHPYNEGYVY
       :::.:::::::: ::....: ..:::::::::.::: ::.:: .:  .:   . :: :
CCDS58 LFSLAFPDNQRPALKAEFDRPVSEEDTVPLSHLDESPAYLPELAGPAQPFGPKGGYSY
       390       400       410       420       430       440     

>>CCDS11465.1 ETV4 gene_id:2118|Hs108|chr17               (484 aa)
 initn: 1554 init1: 868 opt: 1084  Z-score: 708.2  bits: 140.4 E(32554): 4e-33
Smith-Waterman score: 1579; 53.2% identity (70.8% similar) in 489 aa overlap (3-454:8-484)

                    10        20        30        40          50   
pF1KB3      MDGFYDQQVPYMVTNSQRGRNCNEKPTNVRKRKFINRDLAH--DSEELFQDLSQL
              :. ::::::  .... : .  ..       :...       :::.::::::..
CCDS11 MERRMKAGYLDQQVPYTFSSKSPGNGSLREALIGPLGKLMDPGSLPPLDSEDLFQDLSHF
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB3 QETWLAEAQVPDNDEQFVPDYQAESLAFHGLPLKIKKEPHSPCSEIGSACSQEQPFKFSY
       ::::::::::::.:::::::...:.::::.   .:::::.:: .. . .::.. :. . .
CCDS11 QETWLAEAQVPDSDEQFVPDFHSENLAFHSPTTRIKKEPQSPRTDPALSCSRKPPLPYHH
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KB3 GEKCLYNVSAYDQKPQVGMRPSNPPTPSSTPVSPLHHASPNSTHTPKPDRAFPAHLPPSQ
       ::.:::. ::::   :....   : . ...:..:. .:          .: :      ::
CCDS11 GEQCLYS-SAYDPPRQIAIKSPAPGALGQSPLQPFPRAE---------QRNFLRSSGTSQ
               130       140       150                160       170

           180         190       200       210        220       230
pF1KB3 SIPDSSYPMDHR--FRRQLSEPCNSFPPLPTMPREGRPM-YQRQMSEPNIPFPPQGFKQE
         :  .:  .:   :.. : . :.::       ::  :  ::.:.:::  :.: :.::::
CCDS11 PHPGHGYLGEHSSVFQQPL-DICHSFTSQGG-GREPLPAPYQHQLSEPCPPYPQQSFKQE
              180        190       200        210       220        

              240           250        260          270            
pF1KB3 YHDPVYEHNTMV----GSAASQSFPPP-LMIKQEPRDFAYDS---GCM------------
       ::::.::.  .     :.. .. .:   ..::::  ::::::   ::             
CCDS11 YHDPLYEQAGQPAVDQGGVNGHRYPGAGVVIKQEQTDFAYDSDVTGCASMYLHTEGFSGP
      230       240       250       260       270       280        

                        280       290        300       310         
pF1KB3 ----------FEKGPRQFYDDTCVVPEKFDGDIKQEP-GMYREGPTYQRRGSLQLWQFLV
                 .::  : : ::.:::::::.::::::  : .:::: :::::.::::::::
CCDS11 SPGDGAMGYGYEKPLRPFPDDVCVVPEKFEGDIKQEGVGAFREGPPYQRRGALQLWQFLV
      290       300       310       320       330       340        

     320       330       340       350       360       370         
pF1KB3 ALLDDPSNSHFIAWTGRGMEFKLIEPEEVARRWGIQKNRPAMNYDKLSRSLRYYYEKGIM
       ::::::.:.:::::::::::::::::::::: ::::::::::::::::::::::::::::
CCDS11 ALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIM
      350       360       370       380       390       400        

     380       390       400       410       420       430         
pF1KB3 QKVAGERYVYKFVCDPEALFSMAFPDNQRPLLKTDMERHINEEDTVPLSHFDESMAYMPE
       ::::::::::::::.::::::.:::::::: ::....: ..:::::::::.::: ::.::
CCDS11 QKVAGERYVYKFVCEPEALFSLAFPDNQRPALKAEFDRPVSEEDTVPLSHLDESPAYLPE
      410       420       430       440       450       460        

      440       450    
pF1KB3 -GGCCNPHPYNEGYVY
        .:  .:   . :: :
CCDS11 LAGPAQPFGPKGGYSY
      470       480    

>>CCDS59292.1 ETV4 gene_id:2118|Hs108|chr17               (207 aa)
 initn: 986 init1: 868 opt: 1007  Z-score: 664.7  bits: 131.1 E(32554): 1.1e-30
Smith-Waterman score: 1007; 76.1% identity (86.8% similar) in 197 aa overlap (260-454:13-207)

     230       240       250       260       270       280         
pF1KB3 EYHDPVYEHNTMVGSAASQSFPPPLMIKQEPRDFAYDSGCMFEKGPRQFYDDTCVVPEKF
                                     : : :.  :  .::  : : ::.:::::::
CCDS59                   MYLHTEGFSGPSPGDGAMGYG--YEKPLRPFPDDVCVVPEKF
                                 10        20          30        40

     290        300       310       320       330       340        
pF1KB3 DGDIKQEP-GMYREGPTYQRRGSLQLWQFLVALLDDPSNSHFIAWTGRGMEFKLIEPEEV
       .::::::  : .:::: :::::.::::::::::::::.:.::::::::::::::::::::
CCDS59 EGDIKQEGVGAFREGPPYQRRGALQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEV
               50        60        70        80        90       100

      350       360       370       380       390       400        
pF1KB3 ARRWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSMAFPDNQR
       :: ::::::::::::::::::::::::::::::::::::::::::.::::::.:::::::
CCDS59 ARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYKFVCEPEALFSLAFPDNQR
              110       120       130       140       150       160

      410       420       430        440       450    
pF1KB3 PLLKTDMERHINEEDTVPLSHFDESMAYMPE-GGCCNPHPYNEGYVY
       : ::....: ..:::::::::.::: ::.:: .:  .:   . :: :
CCDS59 PALKAEFDRPVSEEDTVPLSHLDESPAYLPELAGPAQPFGPKGGYSY
              170       180       190       200       




454 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:45:24 2016 done: Fri Nov  4 02:45:24 2016
 Total Scan time:  3.070 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com