Result of FASTA (omim) for pFN21AB3421
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3421, 243 aa
  1>>>pF1KB3421 243 - 243 aa - 243 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9397+/-0.000319; mu= 7.2254+/- 0.020
 mean_var=104.0555+/-20.932, 0's: 0 Z-trim(117.7): 4  B-trim: 1651 in 1/60
 Lambda= 0.125731
 statistics sampled from 29910 (29914) to 29910 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.351), width:  16
 Scan time:  6.360

The best scores are:                                      opt bits E(85289)
NP_001243731 (OMIM: 600454) 40S ribosomal protein  ( 243) 1589 298.2 8.6e-81
NP_000996 (OMIM: 600454) 40S ribosomal protein S3  ( 243) 1589 298.2 8.6e-81
NP_001247435 (OMIM: 600454) 40S ribosomal protein  ( 259) 1079 205.7 6.4e-53
NP_001247436 (OMIM: 600454) 40S ribosomal protein  ( 117)  802 155.3 4.3e-38


>>NP_001243731 (OMIM: 600454) 40S ribosomal protein S3 i  (243 aa)
 initn: 1589 init1: 1589 opt: 1589  Z-score: 1571.4  bits: 298.2 E(85289): 8.6e-81
Smith-Waterman score: 1589; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KB3 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
              190       200       210       220       230       240

          
pF1KB3 PTA
       :::
NP_001 PTA
          

>>NP_000996 (OMIM: 600454) 40S ribosomal protein S3 isof  (243 aa)
 initn: 1589 init1: 1589 opt: 1589  Z-score: 1571.4  bits: 298.2 E(85289): 8.6e-81
Smith-Waterman score: 1589; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KB3 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEPPAMPQPV
              190       200       210       220       230       240

          
pF1KB3 PTA
       :::
NP_000 PTA
          

>>NP_001247435 (OMIM: 600454) 40S ribosomal protein S3 i  (259 aa)
 initn: 1065 init1: 1065 opt: 1079  Z-score: 1071.0  bits: 205.7 E(85289): 6.4e-53
Smith-Waterman score: 1547; 93.8% identity (93.8% similar) in 259 aa overlap (1-243:1-259)

               10        20        30        40        50        60
pF1KB3 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG
               10        20        30        40        50        60

               70        80                        90       100    
pF1KB3 EKGRRIRELTAVVQKRFGFPEGSVEL----------------YAEKVATRGLCAIAQAES
       ::::::::::::::::::::::::::                ::::::::::::::::::
NP_001 EKGRRIRELTAVVQKRFGFPEGSVELKIMVMVTGYPLLPLKLYAEKVATRGLCAIAQAES
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KB3 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPV
              130       140       150       160       170       180

          170       180       190       200       210       220    
pF1KB3 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTPIS
              190       200       210       220       230       240

          230       240   
pF1KB3 EQKGGKPEPPAMPQPVPTA
       :::::::::::::::::::
NP_001 EQKGGKPEPPAMPQPVPTA
              250         

>>NP_001247436 (OMIM: 600454) 40S ribosomal protein S3 i  (117 aa)
 initn: 802 init1: 802 opt: 802  Z-score: 804.9  bits: 155.3 E(85289): 4.3e-38
Smith-Waterman score: 802; 100.0% identity (100.0% similar) in 117 aa overlap (127-243:1-117)

        100       110       120       130       140       150      
pF1KB3 CAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGL
                                     ::::::::::::::::::::::::::::::
NP_001                               MESGAKGCEVVVSGKLRGQRAKSMKFVDGL
                                             10        20        30

        160       170       180       190       200       210      
pF1KB3 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE
               40        50        60        70        80        90

        220       230       240   
pF1KB3 ILPTTPISEQKGGKPEPPAMPQPVPTA
       :::::::::::::::::::::::::::
NP_001 ILPTTPISEQKGGKPEPPAMPQPVPTA
              100       110       




243 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:21:35 2016 done: Fri Nov  4 02:21:36 2016
 Total Scan time:  6.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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