(Circular) (Six-base) MAPSORT of: pFN21AB3399.seq Check: 4998 from: 1 to: 5263 pFN21AB3399 5263 bp With 182 enzymes: SgfI * January 16, 2009 15:24 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3073 278 Size: 53 83 186 936 1537 2468 Fragments arranged by size: 2468 1537 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2606 1937 Size: 669 4594 Acc65I G'GTAC_C Cuts at: 2584 2584 Size: 5263 AclI AA'CG_TT Cuts at: 1563 2316 3390 3763 1563 Size: 753 1074 373 3063 Fragments arranged by size: 3063 1074 753 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3326 4710 4978 1632 Size: 1694 1384 268 1917 Fragments arranged by size: 1917 1694 1384 268 AflII C'TTAA_G Cuts at: 820 1017 2086 820 Size: 197 1069 3997 Fragments arranged by size: 3997 1069 197 AflIII A'CryG_T Cuts at: 1203 4162 5139 1203 Size: 2959 977 1327 Fragments arranged by size: 2959 1327 977 AgeI A'CCGG_T Cuts at: 4094 4094 Size: 5263 AhdI GACnn_n'nnGTC Cuts at: 3992 3992 Size: 5263 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5263 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5263 AlwNI CAG_nnn'CTG Cuts at: 3006 4578 3006 Size: 1572 3691 ApaI G_GGCC'C Cuts at: 2490 2490 Size: 5263 ApaLI G'TGCA_C Cuts at: 3320 4476 3320 Size: 1156 4107 ApoI r'AATT_y Cuts at: 1493 2237 2360 2556 2572 2798 2950 5059 1493 Size: 744 123 196 16 226 152 2109 1697 Fragments arranged by size: 2109 1697 744 226 196 152 123 16 AseI AT'TA_AT Cuts at: 160 1032 2147 3817 160 Size: 872 1115 1670 1606 Fragments arranged by size: 1670 1606 1115 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5263 AvaI C'yCGr_G Cuts at: 1870 1943 2588 1870 Size: 73 645 4545 Fragments arranged by size: 4545 645 73 BamHI G'GATC_C Cuts at: 2593 2960 2593 Size: 367 4896 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2243 2584 4039 618 Size: 325 217 627 456 341 1455 1842 Fragments arranged by size: 1842 1455 627 456 341 325 217 BanII G_rGCy'C Cuts at: 1391 2490 2582 1391 Size: 1099 92 4072 Fragments arranged by size: 4072 1099 92 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4292 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3454 3488 1903 Size: 34 1517 34 3678 Fragments arranged by size: 3678 1517 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3155 4365 3155 Size: 1210 4053 BclI T'GATC_A Cuts at: 1548 1548 Size: 5263 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3874 136 Size: 107 122 71 631 605 2202 1525 Fragments arranged by size: 2202 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5258 5258 Size: 5263 BlpI GC'TnA_GC Cuts at: 2254 2680 2254 Size: 426 4837 Bme1580I G_kGCm'C Cuts at: 1790 2490 3324 4480 1790 Size: 700 834 1156 2573 Fragments arranged by size: 2573 1156 834 700 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5263 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2994 3952 442 Size: 416 53 83 399 24 1577 958 1753 Fragments arranged by size: 1753 1577 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5263 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2232 3923 1239 Size: 993 1691 2579 Fragments arranged by size: 2579 1691 993 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3388 4253 4551 3388 Size: 865 298 4100 Fragments arranged by size: 4100 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3926 882 Size: 617 2427 2219 Fragments arranged by size: 2427 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3054 493 Size: 711 1850 2702 Fragments arranged by size: 2702 1850 711 BsaBI GATnn'nnATC Cuts at: 5257 5257 Size: 5263 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3070 3452 4087 275 Size: 53 83 186 936 1537 382 635 1451 Fragments arranged by size: 1537 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3696 4094 4368 4515 4926 3696 Size: 398 274 147 411 4033 Fragments arranged by size: 4033 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2100 2130 1178 Size: 30 165 30 697 30 4311 Fragments arranged by size: 4311 697 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5263 BseYI C'CCAG_C Cuts at: 4466 4962 4466 Size: 496 4767 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4690 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2713 3474 4502 1540 Size: 275 186 712 761 1028 2301 Fragments arranged by size: 2301 1028 761 712 275 186 BsiHKAI G_wGCw'C Cuts at: 3324 3409 4480 3324 Size: 85 1071 4107 Fragments arranged by size: 4107 1071 85 BsmI GAATG_Cn' Cuts at: 2774 2867 2774 Size: 93 5170 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2490 2582 3324 3409 4480 1391 Size: 399 700 92 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 700 399 92 85 BspEI T'CCGG_A Cuts at: 4926 4926 Size: 5263 BspHI T'CATG_A Cuts at: 3152 4882 3152 Size: 1730 3533 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2618 844 Size: 1774 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3150 1394 Size: 429 1327 3507 Fragments arranged by size: 3507 1327 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3758 3932 65 Size: 1183 2510 174 1396 Fragments arranged by size: 2510 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3907 4094 1700 Size: 110 2097 187 2869 Fragments arranged by size: 2869 2097 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5263 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5263 BssSI C'ACGA_G Cuts at: 3323 4335 3323 Size: 1012 4251 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5263 BstBI TT'CG_AA Cuts at: 4067 4067 Size: 5263 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5263 BstYI r'GATC_y Cuts at: 1972 2593 2960 3345 3362 4814 4900 4912 5258 Size: 621 367 385 17 1452 86 12 346 Cuts at: 5258 1972 Size: 1977 Fragments arranged by size: 1977 1452 621 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2191 2191 Size: 5263 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3772 Fragments arranged by size: 3772 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4524 Fragments arranged by size: 4524 683 56 BtsI GCAGTG_nn' Cuts at: 2331 2779 3573 3593 2331 Size: 448 794 20 4001 Fragments arranged by size: 4001 794 448 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5263 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5228 DraI TTT'AAA Cuts at: 2082 2567 2082 Size: 485 4778 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4270 809 Size: 507 2954 1802 Fragments arranged by size: 2954 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2710 3599 5228 Size: 54 1425 50 275 18 880 889 1629 Cuts at: 5228 8 Size: 43 Fragments arranged by size: 1629 1425 889 880 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2710 1537 Size: 275 898 4090 Fragments arranged by size: 4090 898 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3193 1353 Size: 1840 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3850 4224 4370 387 Size: 1064 138 2261 374 146 1280 Fragments arranged by size: 2261 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2232 3326 3923 4710 4978 1239 Size: 393 600 1094 597 787 268 1524 Fragments arranged by size: 1524 1094 787 600 597 393 268 EcoO109I rG'GnC_Cy Cuts at: 2486 2486 Size: 5263 EcoRI G'AATT_C Cuts at: 2360 2572 2950 2360 Size: 212 378 4673 Fragments arranged by size: 4673 378 212 FspI TGC'GCA Cuts at: 3769 3769 Size: 5263 HaeII r_GCGC'y Cuts at: 1678 4410 1678 Size: 2732 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2419 2451 3904 3936 3978 Size: 32 135 32 847 32 1453 32 42 Cuts at: 3978 4010 1373 Size: 32 2626 Fragments arranged by size: 2626 1453 847 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2314 2607 2853 669 Size: 988 281 376 293 246 3079 Fragments arranged by size: 3079 988 376 293 281 246 HindIII A'AGCT_T Cuts at: 748 2153 748 Size: 1405 3858 HpaI GTT'AAC Cuts at: 2314 2853 2314 Size: 539 4724 KpnI G_GTAC'C Cuts at: 2588 2588 Size: 5263 MfeI C'AATT_G Cuts at: 2862 2862 Size: 5263 MluI A'CGCG_T Cuts at: 5139 5139 Size: 5263 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2116 4377 4561 1305 Size: 811 2261 184 2007 Fragments arranged by size: 2261 2007 811 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3441 Fragments arranged by size: 3441 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3221 3580 3739 518 Size: 648 2055 359 159 2042 Fragments arranged by size: 2055 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2679 3356 4504 4749 1606 Size: 1073 677 1148 245 2120 Fragments arranged by size: 2120 1148 1073 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3772 Fragments arranged by size: 3772 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5263 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5263 NotI GC'GGCC_GC Cuts at: 2710 2710 Size: 5263 NspI r_CATG'y Cuts at: 1132 1229 2338 2621 4166 1132 Size: 97 1109 283 1545 2229 Fragments arranged by size: 2229 1545 1109 283 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5263 PciI A'CATG_T Cuts at: 4162 4162 Size: 5263 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5263 PmeI GTTT'AAAC Cuts at: 2567 2567 Size: 5263 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3332 3364 4845 4877 3332 Size: 32 1481 32 3718 Fragments arranged by size: 3718 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5263 PsiI TTA'TAA Cuts at: 2124 2833 2124 Size: 709 4554 PspOMI G'GGCC_C Cuts at: 2486 2486 Size: 5263 PstI C_TGCA'G Cuts at: 830 2271 2615 830 Size: 1441 344 3478 Fragments arranged by size: 3478 1441 344 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5263 SalI G'TCGA_C Cuts at: 1936 2605 1936 Size: 669 4594 SbfI CC_TGCA'GG Cuts at: 2615 2615 Size: 5263 ScaI AGT'ACT Cuts at: 3511 5223 3511 Size: 1712 3551 SfcI C'TryA_G Cuts at: 826 1045 2267 2611 3746 4427 4618 826 Size: 219 1222 344 1135 681 191 1471 Fragments arranged by size: 1471 1222 1135 681 344 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5263 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5263 SmaI CCC'GGG Cuts at: 1872 2590 1872 Size: 718 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2086 3367 4268 4530 820 Size: 197 926 143 1281 901 262 1553 Fragments arranged by size: 1553 1281 926 901 262 197 143 SnaBI TAC'GTA Cuts at: 493 3054 493 Size: 2561 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5263 SphI G_CATG'C Cuts at: 1132 2621 1132 Size: 1489 3774 SspI AAT'ATT Cuts at: 5 52 2292 3187 5 Size: 47 2240 895 2081 Fragments arranged by size: 2240 2081 895 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5263 StyI C'CwwG_G Cuts at: 513 1065 2004 2702 513 Size: 552 939 698 3074 Fragments arranged by size: 3074 939 698 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3290 3307 3460 3645 4090 325 Size: 1255 1710 17 153 185 445 1498 Fragments arranged by size: 1710 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3509 5221 96 Size: 274 80 33 51 1443 1532 1712 138 Fragments arranged by size: 1712 1532 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5223 5255 5223 Size: 32 5231 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5263 XbaI T'CTAG_A Cuts at: 2599 2599 Size: 5263 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5263 XmaI C'CCGG_G Cuts at: 1870 2588 1870 Size: 718 4545 XmnI GAAnn'nnTTC Cuts at: 3392 3392 Size: 5263 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3071 276 Size: 53 83 186 936 1537 2468 Fragments arranged by size: 2468 1537 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI