Result of FASTA (omim) for pFN21AB3399
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3399, 186 aa
  1>>>pF1KB3399 186 - 186 aa - 186 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.2629+/-0.000416; mu= 18.6094+/- 0.026
 mean_var=57.8875+/-11.782, 0's: 0 Z-trim(110.1): 8  B-trim: 0 in 0/51
 Lambda= 0.168571
 statistics sampled from 18362 (18368) to 18362 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.587), E-opt: 0.2 (0.215), width:  16
 Scan time:  5.060

The best scores are:                                      opt bits E(85289)
NP_004856 (OMIM: 605521) TATA box-binding protein- ( 186) 1201 300.3 1.2e-81
NP_001240605 (OMIM: 605521) TATA box-binding prote ( 186) 1201 300.3 1.2e-81
XP_016867002 (OMIM: 605521) PREDICTED: TATA box-bi ( 186) 1201 300.3 1.2e-81
NP_001165556 (OMIM: 168600,600075,607136) TATA-box ( 319)  460 120.3 3.2e-27
NP_003185 (OMIM: 168600,600075,607136) TATA-box-bi ( 339)  460 120.3 3.3e-27
NP_950248 (OMIM: 608964) TATA box-binding protein- ( 375)  451 118.1 1.6e-26


>>NP_004856 (OMIM: 605521) TATA box-binding protein-like  (186 aa)
 initn: 1201 init1: 1201 opt: 1201  Z-score: 1586.8  bits: 300.3 E(85289): 1.2e-81
Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KB3 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
              130       140       150       160       170       180

             
pF1KB3 SRKEIL
       ::::::
NP_004 SRKEIL
             

>>NP_001240605 (OMIM: 605521) TATA box-binding protein-l  (186 aa)
 initn: 1201 init1: 1201 opt: 1201  Z-score: 1586.8  bits: 300.3 E(85289): 1.2e-81
Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KB3 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
              130       140       150       160       170       180

             
pF1KB3 SRKEIL
       ::::::
NP_001 SRKEIL
             

>>XP_016867002 (OMIM: 605521) PREDICTED: TATA box-bindin  (186 aa)
 initn: 1201 init1: 1201 opt: 1201  Z-score: 1586.8  bits: 300.3 E(85289): 1.2e-81
Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KB3 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
              130       140       150       160       170       180

             
pF1KB3 SRKEIL
       ::::::
XP_016 SRKEIL
             

>>NP_001165556 (OMIM: 168600,600075,607136) TATA-box-bin  (319 aa)
 initn: 437 init1: 359 opt: 460  Z-score: 609.8  bits: 120.3 E(85289): 3.2e-27
Smith-Waterman score: 460; 42.2% identity (74.0% similar) in 173 aa overlap (13-183:145-317)

                                 10        20        30        40  
pF1KB3                   MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK-
                                     . :.: .    :.:.:. :::.. :. :. 
NP_001 TTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNP
          120       130       140       150       160       170    

              50        60        70        80        90       100 
pF1KB3 RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFK
       .  . :.:..:.:: :: :.::::..:::: :::.....::. :: .::::: . : :::
NP_001 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFK
          180       190       200       210       220       230    

             110       120       130       140       150       160 
pF1KB3 VVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG
       . :... :.. : :::  .. ...  .:::::: :.. ::. . : .: :: .:....::
NP_001 IQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTG
          240       250       260       270       280       290    

              170       180      
pF1KB3 PNVKA-VATAVEQIYPFVFESRKEIL
        .:.: .  : :.:::..   ::   
NP_001 AKVRAEIYEAFENIYPILKGFRKTT 
          300       310          

>>NP_003185 (OMIM: 168600,600075,607136) TATA-box-bindin  (339 aa)
 initn: 437 init1: 359 opt: 460  Z-score: 609.5  bits: 120.3 E(85289): 3.3e-27
Smith-Waterman score: 460; 42.2% identity (74.0% similar) in 173 aa overlap (13-183:165-337)

                                 10        20        30        40  
pF1KB3                   MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK-
                                     . :.: .    :.:.:. :::.. :. :. 
NP_003 TTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNP
          140       150       160       170       180       190    

              50        60        70        80        90       100 
pF1KB3 RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFK
       .  . :.:..:.:: :: :.::::..:::: :::.....::. :: .::::: . : :::
NP_003 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFK
          200       210       220       230       240       250    

             110       120       130       140       150       160 
pF1KB3 VVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG
       . :... :.. : :::  .. ...  .:::::: :.. ::. . : .: :: .:....::
NP_003 IQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTG
          260       270       280       290       300       310    

              170       180      
pF1KB3 PNVKA-VATAVEQIYPFVFESRKEIL
        .:.: .  : :.:::..   ::   
NP_003 AKVRAEIYEAFENIYPILKGFRKTT 
          320       330          

>>NP_950248 (OMIM: 608964) TATA box-binding protein-like  (375 aa)
 initn: 371 init1: 371 opt: 451  Z-score: 597.1  bits: 118.1 E(85289): 1.6e-26
Smith-Waterman score: 451; 41.7% identity (75.0% similar) in 168 aa overlap (13-178:202-369)

                                 10        20        30        40  
pF1KB3                   MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK-
                                     . :.: .    :.:.:.::::.. :. :. 
NP_950 KPNSDSLSLASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNP
             180       190       200       210       220       230 

              50        60        70        80        90       100 
pF1KB3 RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFK
       .  . :.:..:.:: :: :.::::..:::: :::.....::. :: .::::: . : :::
NP_950 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFK
             240       250       260       270       280       290 

             110       120       130       140       150       160 
pF1KB3 VVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG
       . :... :.. : :::  .. ...  .:::::: :.. ::. . : .: :: .:....::
NP_950 IQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG
             300       310       320       330       340       350 

              170       180      
pF1KB3 PNVKA-VATAVEQIYPFVFESRKEIL
        . .. .  : :.:::..        
NP_950 AKERSEIYEAFENIYPILKGFKKA  
             360       370       




186 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:18:26 2016 done: Fri Nov  4 02:18:27 2016
 Total Scan time:  5.060 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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