Result of FASTA (ccds) for
pFN21AA0196
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0196, 1159 aa
1>>>pF1KA0196 1159 - 1159 aa - 1159 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6653+/-0.00135; mu= 20.0185+/- 0.081
mean_var=68.4244+/-13.764, 0's: 0 Z-trim(98.9): 42 B-trim: 2 in 1/49
Lambda= 0.155049
statistics sampled from 5539 (5544) to 5539 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.5), E-opt: 0.2 (0.17), width: 16
Scan time: 3.240
The best scores are: opt bits E(32554)
CCDS6355.1 WASHC5 gene_id:9897|Hs108|chr8 (1159) 7559 1701.2 0
CCDS83325.1 WASHC5 gene_id:9897|Hs108|chr8 (1011) 6588 1484.0 0
>>CCDS6355.1 WASHC5 gene_id:9897|Hs108|chr8 (1159 aa)
initn: 7559 init1: 7559 opt: 7559 Z-score: 9129.4 bits: 1701.2 E(32554): 0
Smith-Waterman score: 7559; 100.0% identity (100.0% similar) in 1159 aa overlap (1-1159:1-1159)
10 20 30 40 50 60
pF1KA0 MLDFLAENNLCGQAILRIVSCGNAIIAELLRLSEFIPAVFRLKDRADQQKYGDIIFDFSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MLDFLAENNLCGQAILRIVSCGNAIIAELLRLSEFIPAVFRLKDRADQQKYGDIIFDFSY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 FKGPELWESKLDAKPELQDLDEEFRENNIEIVTRFYLAFQSVHKYIVDLNRYLDDLNEGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 FKGPELWESKLDAKPELQDLDEEFRENNIEIVTRFYLAFQSVHKYIVDLNRYLDDLNEGV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 YIQQTLETVLLNEDGKQLLCEALYLYGVMLLVIDQKIEGEVRERMLVSYYRYSAARSSAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YIQQTLETVLLNEDGKQLLCEALYLYGVMLLVIDQKIEGEVRERMLVSYYRYSAARSSAD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 SNMDDICKLLRSTGYSSQPGAKRPSNYPESYFQRVPINESFISMVIGRLRSDDIYNQVSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SNMDDICKLLRSTGYSSQPGAKRPSNYPESYFQRVPINESFISMVIGRLRSDDIYNQVSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 YPLPEHRSTALANQAAMLYVILYFEPSILHTHQAKMREIVDKYFPDNWVISIYMGITVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 YPLPEHRSTALANQAAMLYVILYFEPSILHTHQAKMREIVDKYFPDNWVISIYMGITVNL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 VDAWEPYKAAKTALNNTLDLSNVREQASRYATVSERVHAQVQQFLKEGYLREEMVLDNIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VDAWEPYKAAKTALNNTLDLSNVREQASRYATVSERVHAQVQQFLKEGYLREEMVLDNIP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 KLLNCLRDCNVAIRWLMLHTADSACDPNNKRLRQIKDQILTDSRYNPRILFQLLLDTAQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KLLNCLRDCNVAIRWLMLHTADSACDPNNKRLRQIKDQILTDSRYNPRILFQLLLDTAQF
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 EFILKEMFKQMLSEKQTKWEHYKKEGSERMTELADVFSGVKPLTRVEKNENLQAWFREIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EFILKEMFKQMLSEKQTKWEHYKKEGSERMTELADVFSGVKPLTRVEKNENLQAWFREIS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 KQILSLNYDDSTAAGRKTVQLIQALEEVQEFHQLESNLQVCQFLADTRKFLHQMIRTINI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KQILSLNYDDSTAAGRKTVQLIQALEEVQEFHQLESNLQVCQFLADTRKFLHQMIRTINI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 KEEVLITMQIVGDLSFAWQLIDSFTSIMQESIRVNPSMVTKLRATFLKLASALDLPLLRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KEEVLITMQIVGDLSFAWQLIDSFTSIMQESIRVNPSMVTKLRATFLKLASALDLPLLRI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 NQANSPDLLSVSQYYSGELVSYVRKVLQIIPESMFTSLLKIIKLQTHDIIEVPTRLDKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NQANSPDLLSVSQYYSGELVSYVRKVLQIIPESMFTSLLKIIKLQTHDIIEVPTRLDKDK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 LRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIKVDPKQLLEDGIRKELVKRVAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIKVDPKQLLEDGIRKELVKRVAF
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 ALHRGLIFNPRAKPSELMPKLKELGATMDGFHRSFEYIQDYVNIYGLKIWQEEVSRIINY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 ALHRGLIFNPRAKPSELMPKLKELGATMDGFHRSFEYIQDYVNIYGLKIWQEEVSRIINY
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 NVEQECNNFLRTKIQDWQSMYQSTHIPIPKFTPVDESVTFIGRLCREILRITDPKMTCHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NVEQECNNFLRTKIQDWQSMYQSTHIPIPKFTPVDESVTFIGRLCREILRITDPKMTCHI
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 DQLNTWYDMKTHQEVTSSRLFSEIQTTLGTFGLNGLDRLLCFMIVKELQNFLSMFQKIIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 DQLNTWYDMKTHQEVTSSRLFSEIQTTLGTFGLNGLDRLLCFMIVKELQNFLSMFQKIIL
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 RDRTVQDTLKTLMNAVSPLKSIVANSNKIYFSAIAKTQKIWTAYLEAIMKVGQMQILRQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 RDRTVQDTLKTLMNAVSPLKSIVANSNKIYFSAIAKTQKIWTAYLEAIMKVGQMQILRQQ
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 IANELNYSCRFDSKHLAAALENLNKALLADIEAHYQDPSLPYPKEDNTLLYEITAYLEAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 IANELNYSCRFDSKHLAAALENLNKALLADIEAHYQDPSLPYPKEDNTLLYEITAYLEAA
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 GIHNPLNKIYITTKRLPYFPIVNFLFLIAQLPKLQYNKNLGMVCRKPTDPVDWPPLVLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 GIHNPLNKIYITTKRLPYFPIVNFLFLIAQLPKLQYNKNLGMVCRKPTDPVDWPPLVLGL
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 LTLLKQFHSRYTEQFLALIGQFICSTVEQCTSQKIPEIPADVVGALLFLEDYVRYTKLPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LTLLKQFHSRYTEQFLALIGQFICSTVEQCTSQKIPEIPADVVGALLFLEDYVRYTKLPR
1090 1100 1110 1120 1130 1140
1150
pF1KA0 RVAEAHVPNFIFDEFRTVL
:::::::::::::::::::
CCDS63 RVAEAHVPNFIFDEFRTVL
1150
>>CCDS83325.1 WASHC5 gene_id:9897|Hs108|chr8 (1011 aa)
initn: 6588 init1: 6588 opt: 6588 Z-score: 7956.5 bits: 1484.0 E(32554): 0
Smith-Waterman score: 6588; 100.0% identity (100.0% similar) in 1011 aa overlap (149-1159:1-1011)
120 130 140 150 160 170
pF1KA0 GVYIQQTLETVLLNEDGKQLLCEALYLYGVMLLVIDQKIEGEVRERMLVSYYRYSAARSS
::::::::::::::::::::::::::::::
CCDS83 MLLVIDQKIEGEVRERMLVSYYRYSAARSS
10 20 30
180 190 200 210 220 230
pF1KA0 ADSNMDDICKLLRSTGYSSQPGAKRPSNYPESYFQRVPINESFISMVIGRLRSDDIYNQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ADSNMDDICKLLRSTGYSSQPGAKRPSNYPESYFQRVPINESFISMVIGRLRSDDIYNQV
40 50 60 70 80 90
240 250 260 270 280 290
pF1KA0 SAYPLPEHRSTALANQAAMLYVILYFEPSILHTHQAKMREIVDKYFPDNWVISIYMGITV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SAYPLPEHRSTALANQAAMLYVILYFEPSILHTHQAKMREIVDKYFPDNWVISIYMGITV
100 110 120 130 140 150
300 310 320 330 340 350
pF1KA0 NLVDAWEPYKAAKTALNNTLDLSNVREQASRYATVSERVHAQVQQFLKEGYLREEMVLDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NLVDAWEPYKAAKTALNNTLDLSNVREQASRYATVSERVHAQVQQFLKEGYLREEMVLDN
160 170 180 190 200 210
360 370 380 390 400 410
pF1KA0 IPKLLNCLRDCNVAIRWLMLHTADSACDPNNKRLRQIKDQILTDSRYNPRILFQLLLDTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 IPKLLNCLRDCNVAIRWLMLHTADSACDPNNKRLRQIKDQILTDSRYNPRILFQLLLDTA
220 230 240 250 260 270
420 430 440 450 460 470
pF1KA0 QFEFILKEMFKQMLSEKQTKWEHYKKEGSERMTELADVFSGVKPLTRVEKNENLQAWFRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 QFEFILKEMFKQMLSEKQTKWEHYKKEGSERMTELADVFSGVKPLTRVEKNENLQAWFRE
280 290 300 310 320 330
480 490 500 510 520 530
pF1KA0 ISKQILSLNYDDSTAAGRKTVQLIQALEEVQEFHQLESNLQVCQFLADTRKFLHQMIRTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ISKQILSLNYDDSTAAGRKTVQLIQALEEVQEFHQLESNLQVCQFLADTRKFLHQMIRTI
340 350 360 370 380 390
540 550 560 570 580 590
pF1KA0 NIKEEVLITMQIVGDLSFAWQLIDSFTSIMQESIRVNPSMVTKLRATFLKLASALDLPLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NIKEEVLITMQIVGDLSFAWQLIDSFTSIMQESIRVNPSMVTKLRATFLKLASALDLPLL
400 410 420 430 440 450
600 610 620 630 640 650
pF1KA0 RINQANSPDLLSVSQYYSGELVSYVRKVLQIIPESMFTSLLKIIKLQTHDIIEVPTRLDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 RINQANSPDLLSVSQYYSGELVSYVRKVLQIIPESMFTSLLKIIKLQTHDIIEVPTRLDK
460 470 480 490 500 510
660 670 680 690 700 710
pF1KA0 DKLRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIKVDPKQLLEDGIRKELVKRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DKLRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIKVDPKQLLEDGIRKELVKRV
520 530 540 550 560 570
720 730 740 750 760 770
pF1KA0 AFALHRGLIFNPRAKPSELMPKLKELGATMDGFHRSFEYIQDYVNIYGLKIWQEEVSRII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AFALHRGLIFNPRAKPSELMPKLKELGATMDGFHRSFEYIQDYVNIYGLKIWQEEVSRII
580 590 600 610 620 630
780 790 800 810 820 830
pF1KA0 NYNVEQECNNFLRTKIQDWQSMYQSTHIPIPKFTPVDESVTFIGRLCREILRITDPKMTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 NYNVEQECNNFLRTKIQDWQSMYQSTHIPIPKFTPVDESVTFIGRLCREILRITDPKMTC
640 650 660 670 680 690
840 850 860 870 880 890
pF1KA0 HIDQLNTWYDMKTHQEVTSSRLFSEIQTTLGTFGLNGLDRLLCFMIVKELQNFLSMFQKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 HIDQLNTWYDMKTHQEVTSSRLFSEIQTTLGTFGLNGLDRLLCFMIVKELQNFLSMFQKI
700 710 720 730 740 750
900 910 920 930 940 950
pF1KA0 ILRDRTVQDTLKTLMNAVSPLKSIVANSNKIYFSAIAKTQKIWTAYLEAIMKVGQMQILR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 ILRDRTVQDTLKTLMNAVSPLKSIVANSNKIYFSAIAKTQKIWTAYLEAIMKVGQMQILR
760 770 780 790 800 810
960 970 980 990 1000 1010
pF1KA0 QQIANELNYSCRFDSKHLAAALENLNKALLADIEAHYQDPSLPYPKEDNTLLYEITAYLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 QQIANELNYSCRFDSKHLAAALENLNKALLADIEAHYQDPSLPYPKEDNTLLYEITAYLE
820 830 840 850 860 870
1020 1030 1040 1050 1060 1070
pF1KA0 AAGIHNPLNKIYITTKRLPYFPIVNFLFLIAQLPKLQYNKNLGMVCRKPTDPVDWPPLVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 AAGIHNPLNKIYITTKRLPYFPIVNFLFLIAQLPKLQYNKNLGMVCRKPTDPVDWPPLVL
880 890 900 910 920 930
1080 1090 1100 1110 1120 1130
pF1KA0 GLLTLLKQFHSRYTEQFLALIGQFICSTVEQCTSQKIPEIPADVVGALLFLEDYVRYTKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 GLLTLLKQFHSRYTEQFLALIGQFICSTVEQCTSQKIPEIPADVVGALLFLEDYVRYTKL
940 950 960 970 980 990
1140 1150
pF1KA0 PRRVAEAHVPNFIFDEFRTVL
:::::::::::::::::::::
CCDS83 PRRVAEAHVPNFIFDEFRTVL
1000 1010
1159 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:31:46 2016 done: Fri Nov 4 00:31:47 2016
Total Scan time: 3.240 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]