Result of FASTA (omim) for
pFN21AB9506
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9506, 442 aa
1>>>pF1KB9506 442 - 442 aa - 442 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.8417+/-0.000368; mu= -13.1642+/- 0.023
mean_var=366.2616+/-76.131, 0's: 0 Z-trim(123.1): 85 B-trim: 34 in 1/58
Lambda= 0.067016
statistics sampled from 42291 (42386) to 42291 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.497), width: 16
Scan time: 11.820
The best scores are: opt bits E(85289)
NP_055469 (OMIM: 186357,601665) syndecan-3 precurs ( 442) 2855 289.7 1e-77
XP_011540765 (OMIM: 186357,601665) PREDICTED: synd ( 431) 2557 260.9 4.6e-69
XP_011540766 (OMIM: 186357,601665) PREDICTED: synd ( 430) 2549 260.2 7.9e-69
XP_011540768 (OMIM: 186357,601665) PREDICTED: synd ( 400) 2543 259.6 1.1e-68
NP_002988 (OMIM: 186355) syndecan-1 precursor [Hom ( 310) 343 46.8 9.7e-05
NP_001006947 (OMIM: 186355) syndecan-1 precursor [ ( 310) 343 46.8 9.7e-05
XP_005262679 (OMIM: 186355) PREDICTED: syndecan-1 ( 292) 338 46.3 0.00013
XP_005262678 (OMIM: 186355) PREDICTED: syndecan-1 ( 305) 338 46.3 0.00013
XP_005262677 (OMIM: 186355) PREDICTED: syndecan-1 ( 334) 338 46.3 0.00014
NP_775082 (OMIM: 602372) zonadhesin isoform 6 prec (2721) 302 43.5 0.0085
NP_003377 (OMIM: 602372) zonadhesin isoform 3 prec (2812) 302 43.5 0.0087
>>NP_055469 (OMIM: 186357,601665) syndecan-3 precursor [ (442 aa)
initn: 2855 init1: 2855 opt: 2855 Z-score: 1516.4 bits: 289.7 E(85289): 1e-77
Smith-Waterman score: 2855; 100.0% identity (100.0% similar) in 442 aa overlap (1-442:1-442)
10 20 30 40 50 60
pF1KB9 MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB9 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
370 380 390 400 410 420
430 440
pF1KB9 LEEPKQASVTYQKPDKQEEFYA
::::::::::::::::::::::
NP_055 LEEPKQASVTYQKPDKQEEFYA
430 440
>>XP_011540765 (OMIM: 186357,601665) PREDICTED: syndecan (431 aa)
initn: 2543 init1: 2543 opt: 2557 Z-score: 1360.9 bits: 260.9 E(85289): 4.6e-69
Smith-Waterman score: 2557; 97.1% identity (97.3% similar) in 415 aa overlap (28-442:18-431)
10 20 30 40 50 60
pF1KB9 MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD
: :::: : : . ::::::::::::::
XP_011 MSCRALCWCWGHSSEQDRHKTLPPLELTR-HWRLGEAQRWRSENFERPVD
10 20 30 40
70 80 90 100 110 120
pF1KB9 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB9 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
350 360 370 380 390 400
430 440
pF1KB9 LEEPKQASVTYQKPDKQEEFYA
::::::::::::::::::::::
XP_011 LEEPKQASVTYQKPDKQEEFYA
410 420 430
>>XP_011540766 (OMIM: 186357,601665) PREDICTED: syndecan (430 aa)
initn: 2545 init1: 2545 opt: 2549 Z-score: 1356.7 bits: 260.2 E(85289): 7.9e-69
Smith-Waterman score: 2549; 96.0% identity (96.4% similar) in 421 aa overlap (22-442:12-430)
10 20 30 40 50 60
pF1KB9 MKPGPPHRAGAAHGAGAGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVD
: : : : . : : :. : ::::::::::::::
XP_011 MTTQTQSLPPGAIGGGDRHIPLKPGNKP--ANFQAVAQRWRSENFERPVD
10 20 30 40
70 80 90 100 110 120
pF1KB9 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEGSGDDDSFPDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQ
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB9 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVP
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB9 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLD
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB9 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TEAPTPRLVSTATSRPRALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTT
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB9 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB9 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYT
350 360 370 380 390 400
430 440
pF1KB9 LEEPKQASVTYQKPDKQEEFYA
::::::::::::::::::::::
XP_011 LEEPKQASVTYQKPDKQEEFYA
410 420 430
>>XP_011540768 (OMIM: 186357,601665) PREDICTED: syndecan (400 aa)
initn: 2543 init1: 2543 opt: 2543 Z-score: 1354.0 bits: 259.6 E(85289): 1.1e-68
Smith-Waterman score: 2543; 100.0% identity (100.0% similar) in 396 aa overlap (47-442:5-400)
20 30 40 50 60 70
pF1KB9 AGAGAAAGPGARGLLLPPLLLLLLAGRAAGAQRWRSENFERPVDLEGSGDDDSFPDDELD
::::::::::::::::::::::::::::::
XP_011 MGPQAQRWRSENFERPVDLEGSGDDDSFPDDELD
10 20 30
80 90 100 110 120 130
pF1KB9 DLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEELPSERPTL
40 50 60 70 80 90
140 150 160 170 180 190
pF1KB9 EPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTGDPTVATVPATVATATPSTPAAPPF
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB9 TATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSPPTTAAVLDTEAPTPRLVSTATSRP
160 170 180 190 200 210
260 270 280 290 300 310
pF1KB9 RALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RALPRPATTQEPDIPERSTLPLGTTAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGD
220 230 240 250 260 270
320 330 340 350 360 370
pF1KB9 FELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FELPEEETTQPDTANEVVAVGGAAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQ
280 290 300 310 320 330
380 390 400 410 420 430
pF1KB9 KSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KSILERKEVLVAVIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDK
340 350 360 370 380 390
440
pF1KB9 QEEFYA
::::::
XP_011 QEEFYA
400
>>NP_002988 (OMIM: 186355) syndecan-1 precursor [Homo sa (310 aa)
initn: 300 init1: 213 opt: 343 Z-score: 206.1 bits: 46.8 E(85289): 9.7e-05
Smith-Waterman score: 399; 33.8% identity (57.8% similar) in 325 aa overlap (135-442:16-310)
110 120 130 140 150 160
pF1KB9 LAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMA
.:.:: .:.:..: : .. . : ...
NP_002 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFS
10 20 30 40
170 180 190 200 210 220
pF1KB9 TTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARA
..: . : :.. :::: : ..: :. : : ..:.. .
NP_002 GSGAGALQD-------ITLSQQTPSTWKD---TQLLTAIPTSPE----PTGLEATAASTS
50 60 70 80 90
230 240 250 260 270 280
pF1KB9 TTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPR-ALPRP-ATTQEPDIPERSTLPLGTTA
: : . .: ::. :.. :.: . : ::: ::: : . :: .:::
NP_002 TLPAGEGPKEGEAVV-----LPEVEPGLTAREQEATPRPRETTQLPTTHQASTTT-ATTA
100 110 120 130 140
290 300 310 320 330 340
pF1KB9 PGPTEVAQTPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAA
:. : :. . . : .: .::: .:.. :. : : .:.: .: ::..
NP_002 QEPA----TSHPHRDMQPGHHETSTP--AGPSQADLHTPHTEDGGP-SATERAAEDGASS
150 160 170 180 190
350 360 370 380
pF1KB9 KASSPPGTLPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVA
. . :. . : . : ... .:.:...:. ...:.::::: .
NP_002 QLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGAS---QGLLDRKEVLGG
200 210 220 230 240 250
390 400 410 420 430 440
pF1KB9 VIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
::.::.:: .::. :: ...:::::::::::.:::::::. .:::: :::::::
NP_002 VIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
260 270 280 290 300 310
>>NP_001006947 (OMIM: 186355) syndecan-1 precursor [Homo (310 aa)
initn: 300 init1: 213 opt: 343 Z-score: 206.1 bits: 46.8 E(85289): 9.7e-05
Smith-Waterman score: 399; 33.8% identity (57.8% similar) in 325 aa overlap (135-442:16-310)
110 120 130 140 150 160
pF1KB9 LAVSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMA
.:.:: .:.:..: : .. . : ...
NP_001 MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFS
10 20 30 40
170 180 190 200 210 220
pF1KB9 TTAATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARA
..: . : :.. :::: : ..: :. : : ..:.. .
NP_001 GSGAGALQD-------ITLSQQTPSTWKD---TQLLTAIPTSPE----PTGLEATAASTS
50 60 70 80 90
230 240 250 260 270 280
pF1KB9 TTPEAPSPPTTAAVLDTEAPTPRLVSTATSRPR-ALPRP-ATTQEPDIPERSTLPLGTTA
: : . .: ::. :.. :.: . : ::: ::: : . :: .:::
NP_001 TLPAGEGPKEGEAVV-----LPEVEPGLTAREQEATPRPRETTQLPTTHQASTTT-ATTA
100 110 120 130 140
290 300 310 320 330 340
pF1KB9 PGPTEVAQTPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAA
:. : :. . . : .: .::: .:.. :. : : .:.: .: ::..
NP_001 QEPA----TSHPHRDMQPGHHETSTP--AGPSQADLHTPHTEDGGP-SATERAAEDGASS
150 160 170 180 190
350 360 370 380
pF1KB9 KASSPPGTLPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVA
. . :. . : . : ... .:.:...:. ...:.::::: .
NP_001 QLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGAS---QGLLDRKEVLGG
200 210 220 230 240 250
390 400 410 420 430 440
pF1KB9 VIVGGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
::.::.:: .::. :: ...:::::::::::.:::::::. .:::: :::::::
NP_001 VIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
260 270 280 290 300 310
>>XP_005262679 (OMIM: 186355) PREDICTED: syndecan-1 isof (292 aa)
initn: 299 init1: 213 opt: 338 Z-score: 203.8 bits: 46.3 E(85289): 0.00013
Smith-Waterman score: 373; 34.4% identity (57.7% similar) in 317 aa overlap (143-442:6-292)
120 130 140 150 160 170
pF1KB9 VLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTG
.:.:..: : .. . : ... ..: .
XP_005 MGDEQIVATNLPPEDQDGSGDDSDNFSGSGAGALQ
10 20 30
180 190 200 210 220 230
pF1KB9 DPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSP
: :.. :::: : ..: :. : : ..:.. .: : . .:
XP_005 D-------ITLSQQTPSTWKD---TQLLTAIPTSPE----PTGLEATAASTSTLPAGEGP
40 50 60 70 80
240 250 260 270 280 290
pF1KB9 PTTAAVLDTEAPTPRLVSTATSRPR-ALPRP-ATTQEPDIPERSTLPLGTTAPGPTEVAQ
::. :. : : :.: . : ::: ::: : :: .::: :.
XP_005 KEGEAVVLPEVE-PGL----TAREQEATPRPRETTQLPTTHLASTTT-ATTAQEPA----
90 100 110 120 130
300 310 320 330 340
pF1KB9 TPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAAKASSPPGT
: :. . . : .: .::: .:.. :. : : .:.: .: ::... . :.
XP_005 TSHPHRDMQPGHHETSTP--AGPSQADLHTPHTEDGGP-SATERAAEDGASSQLPAAEGS
140 150 160 170 180
350 360 370 380 390
pF1KB9 LPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVAVIVGGVVG
. : . : ... .:.:...:. ...:.::::: .::.::.::
XP_005 GEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGAS---QGLLDRKEVLGGVIAGGLVG
190 200 210 220 230 240
400 410 420 430 440
pF1KB9 ALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
.::. :: ...:::::::::::.:::::::. .:::: :::::::
XP_005 LIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
250 260 270 280 290
>>XP_005262678 (OMIM: 186355) PREDICTED: syndecan-1 isof (305 aa)
initn: 299 init1: 213 opt: 338 Z-score: 203.5 bits: 46.3 E(85289): 0.00013
Smith-Waterman score: 373; 34.4% identity (57.7% similar) in 317 aa overlap (143-442:19-305)
120 130 140 150 160 170
pF1KB9 VLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATTAATSTG
.:.:..: : .. . : ... ..: .
XP_005 MTVYCRWAMVDCDCSLQQIVATNLPPEDQDGSGDDSDNFSGSGAGALQ
10 20 30 40
180 190 200 210 220 230
pF1KB9 DPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATTPEAPSP
: :.. :::: : ..: :. : : ..:.. .: : . .:
XP_005 D-------ITLSQQTPSTWKD---TQLLTAIPTSPE----PTGLEATAASTSTLPAGEGP
50 60 70 80 90
240 250 260 270 280 290
pF1KB9 PTTAAVLDTEAPTPRLVSTATSRPR-ALPRP-ATTQEPDIPERSTLPLGTTAPGPTEVAQ
::. :. : : :.: . : ::: ::: : :: .::: :.
XP_005 KEGEAVVLPEVE-PGL----TAREQEATPRPRETTQLPTTHLASTTT-ATTAQEPA----
100 110 120 130 140
300 310 320 330 340
pF1KB9 TPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAAKASSPPGT
: :. . . : .: .::: .:.. :. : : .:.: .: ::... . :.
XP_005 TSHPHRDMQPGHHETSTP--AGPSQADLHTPHTEDGGP-SATERAAEDGASSQLPAAEGS
150 160 170 180 190 200
350 360 370 380 390
pF1KB9 LPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVAVIVGGVVG
. : . : ... .:.:...:. ...:.::::: .::.::.::
XP_005 GEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGAS---QGLLDRKEVLGGVIAGGLVG
210 220 230 240 250
400 410 420 430 440
pF1KB9 ALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
.::. :: ...:::::::::::.:::::::. .:::: :::::::
XP_005 LIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
260 270 280 290 300
>>XP_005262677 (OMIM: 186355) PREDICTED: syndecan-1 isof (334 aa)
initn: 299 init1: 213 opt: 338 Z-score: 203.0 bits: 46.3 E(85289): 0.00014
Smith-Waterman score: 374; 33.5% identity (57.1% similar) in 322 aa overlap (137-442:42-334)
110 120 130 140 150 160
pF1KB9 VSTTPAVLPTTNIQPVGTPFEELPSERPTLEPATSPLVVTEVPEEPSQRATTVSTTMATT
: .:.:..: : .. . : ... .
XP_005 CLAPSLPHLELSLGGGGAAGEGRAESLDESEAMIPQIVATNLPPEDQDGSGDDSDNFSGS
20 30 40 50 60 70
170 180 190 200 210 220
pF1KB9 AATSTGDPTVATVPATVATATPSTPAAPPFTATTAVIRTTGVRRLLPLPLTTVATARATT
.: . : :.. :::: : ..: :. : : ..:.. .:
XP_005 GAGALQD-------ITLSQQTPSTWKD---TQLLTAIPTSPE----PTGLEATAASTSTL
80 90 100 110
230 240 250 260 270 280
pF1KB9 PEAPSPPTTAAVLDTEAPTPRLVSTATSRPRALPRP-ATTQEPDIPERSTLPLGTTAPGP
: . .: ::. :. : :.. . .: ::: ::: : :: .::: :
XP_005 PAGEGPKEGEAVVLPEVE-PGLTAR---EQEATPRPRETTQLPTTHLASTTT-ATTAQEP
120 130 140 150 160 170
290 300 310 320 330 340
pF1KB9 TEVAQTPTPETFLTTIRDEPEVPVSGGPS-GDFELPEEETTQPDTANEVVAVGGAAAKAS
. : :. . . : .:. ::: .:.. :. : : .:.: .: ::...
XP_005 A----TSHPHRDMQPGHHETSTPA--GPSQADLHTPHTEDGGP-SATERAAEDGASSQLP
180 190 200 210 220
350 360 370 380 390
pF1KB9 SPPGTLPK-------GARPG-----PGLLDNA-IDSGSSAAQLPQKSILERKEVLVAVIV
. :. . : . : ... .:.:...: ....:.::::: .::.
XP_005 AAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGA---SQGLLDRKEVLGGVIA
230 240 250 260 270 280
400 410 420 430 440
pF1KB9 GGVVGALFAAFLVTLLIYRMKKKDEGSYTLEEPKQASV-TYQKPDKQEEFYA
::.:: .::. :: ...:::::::::::.:::::::. .:::: :::::::
XP_005 GGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKPTKQEEFYA
290 300 310 320 330
>>NP_775082 (OMIM: 602372) zonadhesin isoform 6 precurso (2721 aa)
initn: 103 init1: 66 opt: 302 Z-score: 171.2 bits: 43.5 E(85289): 0.0085
Smith-Waterman score: 305; 31.5% identity (51.8% similar) in 257 aa overlap (101-325:584-830)
80 90 100 110 120
pF1KB9 PDDELDDLYSGSGSGYFEQESGIETAMRFSPDVALAVSTTPAVLPTTNIQPVGTPFEE--
: : : :. :: . . : :.
NP_775 SETTGLTENPTISTKKPTVSIEKPSVTTEKPTVPKEKPTIPTEKPTISTEKPTIPSEKPN
560 570 580 590 600 610
130 140 150 160 170
pF1KB9 LPSERPTLEPATSPLVVTEVPEEPSQRAT------TVSTTMATT-----------AATST
.:::.::. :. .: ..:: : ::.. : :.:: :. ..::
NP_775 MPSEKPTI-PSEKPTILTEKPTIPSEKPTIPSEKPTISTEKPTVPTEEPTTPTEETTTSM
620 630 640 650 660 670
180 190 200 210 220
pF1KB9 GDPTVATVPATVATATPSTPAAPP-FTATTAVIRT-----TGVRRLLPLPLTTVATARAT
.:.. : .. : :: :. : .. ..: : . . .: :. : ..:
NP_775 EEPVIPTEKPSIPTEKPSIPTEKPTISMEETIISTEKPTISPEKPTIPTEKPTIPTEKST
680 690 700 710 720 730
230 240 250 260 270
pF1KB9 -TPEAPSPPTTAAVLDTEAPT--PRLVSTATSRPRALPRPAT--TQEPDIP-ERSTLPLG
.:: :. :: .. :: :: :. .: : .: :. : :..: :: :. :.:
NP_775 ISPEKPTTPTEKPTIPTEKPTISPEKPTTPTEKPTISPEKLTIPTEKPTIPTEKPTIP--
740 750 760 770 780 790
280 290 300 310 320 330
pF1KB9 TTAPG-PTEVAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGG
: : :: ::: :: ..: ..: .:. :. :: ::::
NP_775 TEKPTISTEEPTTPTEETTIST--EKPSIPMEK-PT----LPTEETTTSVEETTISTEKL
800 810 820 830 840
340 350 360 370 380 390
pF1KB9 AAAKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGAL
NP_775 TIPMEKPTISTEKPTIPTEKPTISPEKLTIPTEKLTIPTEKPTIPIEETTISTEKLTIPT
850 860 870 880 890 900
442 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 00:06:17 2016 done: Fri Nov 4 00:06:19 2016
Total Scan time: 11.820 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]