Result of FASTA (omim) for pFN21AB5266
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5266, 350 aa
  1>>>pF1KB5266 350 - 350 aa - 350 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7057+/-0.000511; mu= 8.9299+/- 0.031
 mean_var=144.1687+/-31.013, 0's: 0 Z-trim(113.0): 247  B-trim: 1679 in 2/51
 Lambda= 0.106817
 statistics sampled from 21777 (22166) to 21777 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.26), width:  16
 Scan time:  7.010

The best scores are:                                      opt bits E(85289)
NP_009109 (OMIM: 605986) serine-threonine kinase r ( 350) 2352 374.7 1.7e-103
XP_005253351 (OMIM: 605986) PREDICTED: serine-thre ( 256) 1706 275.0 1.2e-73
NP_001155052 (OMIM: 614783,614813) POC1 centriolar ( 359)  342 65.0   3e-10
NP_056241 (OMIM: 614783,614813) POC1 centriolar pr ( 407)  342 65.0 3.3e-10
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478)  341 64.9 4.1e-10
XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 ( 321)  337 64.1 4.7e-10
NP_001155053 (OMIM: 614783,614813) POC1 centriolar ( 369)  337 64.2 5.2e-10
XP_011531864 (OMIM: 614783,614813) PREDICTED: POC1 ( 300)  327 62.6 1.3e-09
XP_011531863 (OMIM: 614783,614813) PREDICTED: POC1 ( 326)  327 62.6 1.4e-09
XP_011531862 (OMIM: 614783,614813) PREDICTED: POC1 ( 374)  327 62.7 1.5e-09
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436)  324 62.3 2.3e-09
NP_008882 (OMIM: 601787) transcription initiation  ( 800)  314 61.0 1.1e-08
XP_016860389 (OMIM: 612173) PREDICTED: sperm-assoc ( 323)  299 58.3 2.7e-08
XP_011510137 (OMIM: 612173) PREDICTED: sperm-assoc ( 323)  299 58.3 2.7e-08
XP_016860391 (OMIM: 612173) PREDICTED: sperm-assoc ( 323)  299 58.3 2.7e-08
XP_016860390 (OMIM: 612173) PREDICTED: sperm-assoc ( 323)  299 58.3 2.7e-08
XP_016860387 (OMIM: 612173) PREDICTED: sperm-assoc ( 390)  299 58.4 3.1e-08
XP_016860386 (OMIM: 612173) PREDICTED: sperm-assoc ( 512)  299 58.5 3.8e-08
XP_016860385 (OMIM: 612173) PREDICTED: sperm-assoc ( 512)  299 58.5 3.8e-08
XP_011510124 (OMIM: 612173) PREDICTED: sperm-assoc ( 528)  299 58.5 3.9e-08
XP_011510125 (OMIM: 612173) PREDICTED: sperm-assoc ( 528)  299 58.5 3.9e-08
XP_011510123 (OMIM: 612173) PREDICTED: sperm-assoc ( 537)  299 58.5 3.9e-08
XP_011510121 (OMIM: 612173) PREDICTED: sperm-assoc ( 577)  299 58.5 4.1e-08
XP_011510116 (OMIM: 612173) PREDICTED: sperm-assoc ( 600)  299 58.5 4.3e-08
NP_078808 (OMIM: 612173) sperm-associated antigen  ( 631)  299 58.6 4.4e-08
NP_942593 (OMIM: 610767,611081) autophagy-related  ( 444)  246 50.3 9.9e-06
XP_005246143 (OMIM: 610767,611081) PREDICTED: auto ( 463)  246 50.3   1e-05
XP_005246141 (OMIM: 610767,611081) PREDICTED: auto ( 480)  246 50.3   1e-05
NP_001177196 (OMIM: 610767,611081) autophagy-relat ( 491)  246 50.3 1.1e-05
NP_001177195 (OMIM: 610767,611081) autophagy-relat ( 523)  246 50.3 1.1e-05
XP_006712671 (OMIM: 610767,611081) PREDICTED: auto ( 540)  246 50.3 1.1e-05
NP_060444 (OMIM: 610767,611081) autophagy-related  ( 588)  246 50.4 1.2e-05
NP_110430 (OMIM: 610767,611081) autophagy-related  ( 607)  246 50.4 1.2e-05
XP_005246139 (OMIM: 610767,611081) PREDICTED: auto ( 624)  246 50.4 1.3e-05
XP_016879716 (OMIM: 609804) PREDICTED: cilia- and  ( 531)  243 49.9 1.5e-05
NP_001074025 (OMIM: 609804) cilia- and flagella-as ( 552)  243 49.9 1.6e-05
NP_659491 (OMIM: 609804) cilia- and flagella-assoc ( 620)  243 49.9 1.7e-05
XP_011510118 (OMIM: 612173) PREDICTED: sperm-assoc ( 592)  240 49.4 2.3e-05
XP_011510120 (OMIM: 612173) PREDICTED: sperm-assoc ( 577)  237 49.0 3.1e-05
XP_011510119 (OMIM: 612173) PREDICTED: sperm-assoc ( 582)  237 49.0 3.1e-05
XP_011510117 (OMIM: 612173) PREDICTED: sperm-assoc ( 592)  237 49.0 3.2e-05
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655)  233 48.4 5.2e-05
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655)  233 48.4 5.2e-05
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655)  233 48.4 5.2e-05
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658)  233 48.4 5.2e-05
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672)  233 48.4 5.3e-05
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672)  233 48.4 5.3e-05
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672)  233 48.4 5.3e-05
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675)  233 48.4 5.3e-05
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675)  233 48.4 5.3e-05


>>NP_009109 (OMIM: 605986) serine-threonine kinase recep  (350 aa)
 initn: 2352 init1: 2352 opt: 2352  Z-score: 1979.2  bits: 374.7 E(85289): 1.7e-103
Smith-Waterman score: 2352; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350)

               10        20        30        40        50        60
pF1KB5 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 AVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 DKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NFNMSVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLVA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 GGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTY
              250       260       270       280       290       300

              310       320       330       340       350
pF1KB5 GLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 GLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
              310       320       330       340       350

>>XP_005253351 (OMIM: 605986) PREDICTED: serine-threonin  (256 aa)
 initn: 1706 init1: 1706 opt: 1706  Z-score: 1442.9  bits: 275.0 E(85289): 1.2e-73
Smith-Waterman score: 1706; 100.0% identity (100.0% similar) in 256 aa overlap (95-350:1-256)

           70        80        90       100       110       120    
pF1KB5 ATLNKDATKAATAAADFTAKVWDAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLL
                                     ::::::::::::::::::::::::::::::
XP_005                               MTLAHKHIVKTVDFTQDSNYLLTGGQDKLL
                                             10        20        30

          130       140       150       160       170       180    
pF1KB5 RIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSLNFNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSADDKTVRLWDHATMTEVKSLNFNM
               40        50        60        70        80        90

          190       200       210       220       230       240    
pF1KB5 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLVAGGED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SVSSMEYIPEGEILVITYGRSIAFHSAVSLDPIKSFEAPATINSASLHPEKEFLVAGGED
              100       110       120       130       140       150

          250       260       270       280       290       300    
pF1KB5 FKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWK
              160       170       180       190       200       210

          310       320       330       340       350
pF1KB5 CVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
       ::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
              220       230       240       250      

>>NP_001155052 (OMIM: 614783,614813) POC1 centriolar pro  (359 aa)
 initn: 317 init1: 127 opt: 342  Z-score: 305.0  bits: 65.0 E(85289): 3e-10
Smith-Waterman score: 342; 26.4% identity (57.3% similar) in 288 aa overlap (12-294:17-300)

                    10        20        30        40        50     
pF1KB5      MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTF
                       ::   :. . ::  :     : :.  :.  :. .    .    :
NP_001 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQ---LASGSMDSCLMVWHMKPQSRAYRF
               10        20        30           40        50       

          60        70        80         90       100       110    
pF1KB5 LGHKGAVWGATLNKDATKAATAAADFTAKVW-DAVSGDELMTLAHKHIVKTVDFTQDSNY
        ::: ::  .... ..   :... : :...:   :.:.  .  ::   :..: : .:.. 
NP_001 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQS
        60        70        80        90       100       110       

          120       130       140       150       160        170   
pF1KB5 LLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT
       ..:...:: ....  .. .   . .: : . .. : .  . . :.:: :::::.:::...
NP_001 FVTASDDKTVKVWATHRQKFLFS-LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSS
       120       130       140        150       160       170      

           180        190        200       210       220        230
pF1KB5 MTEVKSLNFNMS-VSSMEYIPEGE-ILVITYGRSIAFHSAVSLDPIKSFEA-PATINSAS
          :.:   . . :. ... : :  : .  .  ..   .. .   .. ..   :..:. :
NP_001 RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLS
        180       190       200       210       220       230      

              240       250       260       270       280       290
pF1KB5 LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLR
       .::  ..:.... :  :   :   :. : . .:: ::   : ::  :: .:::. :  . 
NP_001 FHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVM
        240       250       260       270       280       290      

              300       310       320       330       340       350
pF1KB5 LWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
       .:..                                                        
NP_001 VWKSNFDIVDHGEVTKVPRPPATLASSMGNLTVSILEQRLTLTEDKLKQCLENQQLIMQR
        300       310       320       330       340       350      

>>NP_056241 (OMIM: 614783,614813) POC1 centriolar protei  (407 aa)
 initn: 317 init1: 127 opt: 342  Z-score: 304.3  bits: 65.0 E(85289): 3.3e-10
Smith-Waterman score: 342; 26.4% identity (57.3% similar) in 288 aa overlap (12-294:17-300)

                    10        20        30        40        50     
pF1KB5      MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTF
                       ::   :. . ::  :     : :.  :.  :. .    .    :
NP_056 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQ---LASGSMDSCLMVWHMKPQSRAYRF
               10        20        30           40        50       

          60        70        80         90       100       110    
pF1KB5 LGHKGAVWGATLNKDATKAATAAADFTAKVW-DAVSGDELMTLAHKHIVKTVDFTQDSNY
        ::: ::  .... ..   :... : :...:   :.:.  .  ::   :..: : .:.. 
NP_056 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQS
        60        70        80        90       100       110       

          120       130       140       150       160        170   
pF1KB5 LLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT
       ..:...:: ....  .. .   . .: : . .. : .  . . :.:: :::::.:::...
NP_056 FVTASDDKTVKVWATHRQKFLFS-LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSS
       120       130       140        150       160       170      

           180        190        200       210       220        230
pF1KB5 MTEVKSLNFNMS-VSSMEYIPEGE-ILVITYGRSIAFHSAVSLDPIKSFEA-PATINSAS
          :.:   . . :. ... : :  : .  .  ..   .. .   .. ..   :..:. :
NP_056 RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLS
        180       190       200       210       220       230      

              240       250       260       270       280       290
pF1KB5 LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLR
       .::  ..:.... :  :   :   :. : . .:: ::   : ::  :: .:::. :  . 
NP_056 FHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVM
        240       250       260       270       280       290      

              300       310       320       330       340       350
pF1KB5 LWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
       .:..                                                        
NP_056 VWKSNFDIVDHGEVTKVPRPPATLASSMGNLPEVDFPVPPGRGRSVESVQSQPQEPVSVP
        300       310       320       330       340       350      

>>NP_758440 (OMIM: 614784,615973) POC1 centriolar protei  (478 aa)
 initn: 382 init1: 161 opt: 341  Z-score: 302.6  bits: 64.9 E(85289): 4.1e-10
Smith-Waterman score: 341; 25.9% identity (57.6% similar) in 290 aa overlap (12-294:16-299)

                   10        20        30        40        50      
pF1KB5     MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTFL
                      ::   ...: .:   : :  : .:  :   :: .         ..
NP_758 MASATEDPVLERYFKGHKAAITSLDLS---PNGKQLATASWDTFLMLWNFKPHARAYRYV
               10        20           30        40        50       

         60        70        80        90        100       110     
pF1KB5 GHKGAVWGATLNKDATKAATAAADFTAKVWDAVSGDELMTL-AHKHIVKTVDFTQDSNYL
       ::: .: .. ..  ..  :.:. : :...:   .  ..  . ::   :..:::. :...:
NP_758 GHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFL
        60        70        80        90       100       110       

         120       130       140       150       160        170    
pF1KB5 LTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILS-ADDKTVRLWDHATM
        :...:: ...... . .     .  ::  .. : .  . . :.: ..:::...:: .. 
NP_758 ATASEDKSIKVWSMYR-QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNK
       120       130        140       150       160       170      

          180       190          200       210        220          
pF1KB5 TEVKSLNFNMSVSSMEYI---PEGEILVITYGRSIAFHSAVSLDPI-KSFEAPAT-INSA
         :.  ::. ::.  ...   : :  .. . . . .    : .. . . ... .  .:  
NP_758 QCVN--NFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCI
        180         190       200       210       220       230    

     230       240       250       260       270       280         
pF1KB5 SLHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTL
       :.::  ..:.... :  :   :   :. . . .:: ::.  : ::  :::.:::. :  .
NP_758 SFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFASGGADTQV
          240       250       260       270       280       290    

     290       300       310       320       330       340         
pF1KB5 RLWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVK
        ::.:                                                       
NP_758 LLWRTNFDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHEEKVETVEINPKLEVIDL
          300       310       320       330       340       350    

>>XP_016861593 (OMIM: 614783,614813) PREDICTED: POC1 cen  (321 aa)
 initn: 264 init1: 127 opt: 337  Z-score: 301.5  bits: 64.1 E(85289): 4.7e-10
Smith-Waterman score: 337; 26.9% identity (60.4% similar) in 245 aa overlap (55-294:19-262)

           30        40        50        60        70        80    
pF1KB5 ITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAK
                                     : ::: ::  .... ..   :... : :..
XP_016             MDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVR
                           10        20        30        40        

            90       100       110       120       130       140   
pF1KB5 VW-DAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT
       .:   :.:.  .  ::   :..: : .:.. ..:...:: ....  .. .   . .: : 
XP_016 IWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFS-LSQHI
       50        60        70        80        90       100        

           150       160        170       180        190        200
pF1KB5 SGIKKALWCSEDKQILSA-DDKTVRLWDHATMTEVKSLNFNMS-VSSMEYIPEGE-ILVI
       . .. : .  . . :.:: :::::.:::...   :.:   . . :. ... : :  : . 
XP_016 NWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAA
       110       120       130       140       150       160       

              210       220        230       240       250         
pF1KB5 TYGRSIAFHSAVSLDPIKSFEA-PATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELE
        .  ..   .. .   .. ..   :..:. :.::  ..:.... :  :   :   :. : 
XP_016 GMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLY
       170       180       190       200       210       220       

     260       270       280       290       300       310         
pF1KB5 SYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPK
       . .:: ::   : ::  :: .:::. :  . .:..                         
XP_016 TLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDIVDHGEVTKVPRPPATLASSMG
       230       240       250       260       270       280       

     320       330       340       350   
pF1KB5 IGFPETTEEELEEIASENSDCIFPSAPDVKA   
                                         
XP_016 NLTVSILEQRLTLTEDKLKQCLENQQLIMQRATP
       290       300       310       320 

>>NP_001155053 (OMIM: 614783,614813) POC1 centriolar pro  (369 aa)
 initn: 264 init1: 127 opt: 337  Z-score: 300.7  bits: 64.2 E(85289): 5.2e-10
Smith-Waterman score: 337; 26.9% identity (60.4% similar) in 245 aa overlap (55-294:19-262)

           30        40        50        60        70        80    
pF1KB5 ITPYGYFLISACKDGKPMLRQGDTGDWIGTFLGHKGAVWGATLNKDATKAATAAADFTAK
                                     : ::: ::  .... ..   :... : :..
NP_001             MDSCLMVWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVR
                           10        20        30        40        

            90       100       110       120       130       140   
pF1KB5 VW-DAVSGDELMTLAHKHIVKTVDFTQDSNYLLTGGQDKLLRIYDLNKPEAEPKEISGHT
       .:   :.:.  .  ::   :..: : .:.. ..:...:: ....  .. .   . .: : 
NP_001 IWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFS-LSQHI
       50        60        70        80        90       100        

           150       160        170       180        190        200
pF1KB5 SGIKKALWCSEDKQILSA-DDKTVRLWDHATMTEVKSLNFNMS-VSSMEYIPEGE-ILVI
       . .. : .  . . :.:: :::::.:::...   :.:   . . :. ... : :  : . 
NP_001 NWVRCAKFSPDGRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAA
       110       120       130       140       150       160       

              210       220        230       240       250         
pF1KB5 TYGRSIAFHSAVSLDPIKSFEA-PATINSASLHPEKEFLVAGGEDFKLYKYDYNSGEELE
        .  ..   .. .   .. ..   :..:. :.::  ..:.... :  :   :   :. : 
NP_001 GMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDSTLKILDLMEGRLLY
       170       180       190       200       210       220       

     260       270       280       290       300       310         
pF1KB5 SYKGHFGPIHCVRFSPDGELYASGSEDGTLRLWQTVVGKTYGLWKCVLPEEDSGELAKPK
       . .:: ::   : ::  :: .:::. :  . .:..                         
NP_001 TLHGHQGPATTVAFSRTGEYFASGGSDEQVMVWKSNFDIVDHGEVTKVPRPPATLASSMG
       230       240       250       260       270       280       

     320       330       340       350                             
pF1KB5 IGFPETTEEELEEIASENSDCIFPSAPDVKA                             
                                                                   
NP_001 NLPEVDFPVPPGRGRSVESVQSQPQEPVSVPQTLTSTLEHIVGQLDVLTQTVSILEQRLT
       290       300       310       320       330       340       

>>XP_011531864 (OMIM: 614783,614813) PREDICTED: POC1 cen  (300 aa)
 initn: 317 init1: 127 opt: 327  Z-score: 293.6  bits: 62.6 E(85289): 1.3e-09
Smith-Waterman score: 327; 26.8% identity (57.1% similar) in 280 aa overlap (12-286:17-292)

                    10        20        30        40        50     
pF1KB5      MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTF
                       ::   :. . ::  :     : :.  :.  :. .    .    :
XP_011 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQ---LASGSMDSCLMVWHMKPQSRAYRF
               10        20        30           40        50       

          60        70        80         90       100       110    
pF1KB5 LGHKGAVWGATLNKDATKAATAAADFTAKVW-DAVSGDELMTLAHKHIVKTVDFTQDSNY
        ::: ::  .... ..   :... : :...:   :.:.  .  ::   :..: : .:.. 
XP_011 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQS
        60        70        80        90       100       110       

          120       130       140       150       160        170   
pF1KB5 LLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT
       ..:...:: ....  .. .   . .: : . .. : .  . . :.:: :::::.:::...
XP_011 FVTASDDKTVKVWATHRQKFLFS-LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSS
       120       130       140        150       160       170      

           180        190        200       210       220        230
pF1KB5 MTEVKSLNFNMS-VSSMEYIPEGE-ILVITYGRSIAFHSAVSLDPIKSFEA-PATINSAS
          :.:   . . :. ... : :  : .  .  ..   .. .   .. ..   :..:. :
XP_011 RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLS
        180       190       200       210       220       230      

              240       250       260       270       280       290
pF1KB5 LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLR
       .::  ..:.... :  :   :   :. : . .:: ::   : ::  :: .:::. :    
XP_011 FHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQVI
        240       250       260       270       280       290      

              300       310       320       330       340       350
pF1KB5 LWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
                                                                   
XP_011 CARP                                                        
        300                                                        

>>XP_011531863 (OMIM: 614783,614813) PREDICTED: POC1 cen  (326 aa)
 initn: 317 init1: 127 opt: 327  Z-score: 293.1  bits: 62.6 E(85289): 1.4e-09
Smith-Waterman score: 327; 26.8% identity (57.1% similar) in 280 aa overlap (12-286:17-292)

                    10        20        30        40        50     
pF1KB5      MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTF
                       ::   :. . ::  :     : :.  :.  :. .    .    :
XP_011 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQ---LASGSMDSCLMVWHMKPQSRAYRF
               10        20        30           40        50       

          60        70        80         90       100       110    
pF1KB5 LGHKGAVWGATLNKDATKAATAAADFTAKVW-DAVSGDELMTLAHKHIVKTVDFTQDSNY
        ::: ::  .... ..   :... : :...:   :.:.  .  ::   :..: : .:.. 
XP_011 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQS
        60        70        80        90       100       110       

          120       130       140       150       160        170   
pF1KB5 LLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT
       ..:...:: ....  .. .   . .: : . .. : .  . . :.:: :::::.:::...
XP_011 FVTASDDKTVKVWATHRQKFLFS-LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSS
       120       130       140        150       160       170      

           180        190        200       210       220        230
pF1KB5 MTEVKSLNFNMS-VSSMEYIPEGE-ILVITYGRSIAFHSAVSLDPIKSFEA-PATINSAS
          :.:   . . :. ... : :  : .  .  ..   .. .   .. ..   :..:. :
XP_011 RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLS
        180       190       200       210       220       230      

              240       250       260       270       280       290
pF1KB5 LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLR
       .::  ..:.... :  :   :   :. : . .:: ::   : ::  :: .:::. :    
XP_011 FHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQTV
        240       250       260       270       280       290      

              300       310       320       330       340       350
pF1KB5 LWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
                                                                   
XP_011 SILEQRLTLTEDKLKQCLENQQLIMQRATP                              
        300       310       320                                    

>>XP_011531862 (OMIM: 614783,614813) PREDICTED: POC1 cen  (374 aa)
 initn: 317 init1: 127 opt: 327  Z-score: 292.3  bits: 62.7 E(85289): 1.5e-09
Smith-Waterman score: 327; 26.8% identity (57.1% similar) in 280 aa overlap (12-286:17-292)

                    10        20        30        40        50     
pF1KB5      MAMRQTPLTCSGHTRPVVDLAFSGITPYGYFLISACKDGKPMLRQGDTGDWIGTF
                       ::   :. . ::  :     : :.  :.  :. .    .    :
XP_011 MAAPCAEDPSLERHFKGHRDAVTCVDFSINTKQ---LASGSMDSCLMVWHMKPQSRAYRF
               10        20        30           40        50       

          60        70        80         90       100       110    
pF1KB5 LGHKGAVWGATLNKDATKAATAAADFTAKVW-DAVSGDELMTLAHKHIVKTVDFTQDSNY
        ::: ::  .... ..   :... : :...:   :.:.  .  ::   :..: : .:.. 
XP_011 TGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQS
        60        70        80        90       100       110       

          120       130       140       150       160        170   
pF1KB5 LLTGGQDKLLRIYDLNKPEAEPKEISGHTSGIKKALWCSEDKQILSA-DDKTVRLWDHAT
       ..:...:: ....  .. .   . .: : . .. : .  . . :.:: :::::.:::...
XP_011 FVTASDDKTVKVWATHRQKFLFS-LSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKSS
       120       130       140        150       160       170      

           180        190        200       210       220        230
pF1KB5 MTEVKSLNFNMS-VSSMEYIPEGE-ILVITYGRSIAFHSAVSLDPIKSFEA-PATINSAS
          :.:   . . :. ... : :  : .  .  ..   .. .   .. ..   :..:. :
XP_011 RECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLS
        180       190       200       210       220       230      

              240       250       260       270       280       290
pF1KB5 LHPEKEFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSEDGTLR
       .::  ..:.... :  :   :   :. : . .:: ::   : ::  :: .:::. :    
XP_011 FHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDEQPE
        240       250       260       270       280       290      

              300       310       320       330       340       350
pF1KB5 LWQTVVGKTYGLWKCVLPEEDSGELAKPKIGFPETTEEELEEIASENSDCIFPSAPDVKA
                                                                   
XP_011 VDFPVPPGRGRSVESVQSQPQEPVSVPQTLTSTLEHIVGQLDVLTQTVSILEQRLTLTED
        300       310       320       330       340       350      




350 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 22:25:23 2016 done: Thu Nov  3 22:25:25 2016
 Total Scan time:  7.010 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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