Result of FASTA (omim) for
pFN21AB5099
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5099, 770 aa
1>>>pF1KB5099 770 - 770 aa - 770 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2972+/-0.000432; mu= 19.9782+/- 0.027
mean_var=66.2665+/-13.735, 0's: 0 Z-trim(109.9): 52 B-trim: 355 in 1/51
Lambda= 0.157553
statistics sampled from 18081 (18123) to 18081 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.212), width: 16
Scan time: 11.490
The best scores are: opt bits E(85289)
XP_011521530 (OMIM: 616190) PREDICTED: cap-specifi ( 770) 5287 1211.4 0
XP_016878933 (OMIM: 616190) PREDICTED: cap-specifi ( 770) 5287 1211.4 0
NP_001311303 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 5287 1211.4 0
XP_011521531 (OMIM: 616190) PREDICTED: cap-specifi ( 770) 5287 1211.4 0
NP_001093112 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 5287 1211.4 0
NP_001311308 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 5287 1211.4 0
NP_001311306 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 5287 1211.4 0
NP_001311307 (OMIM: 616190) cap-specific mRNA (nuc ( 770) 5287 1211.4 0
NP_060818 (OMIM: 616190) cap-specific mRNA (nucleo ( 770) 5287 1211.4 0
XP_005249012 (OMIM: 616189) PREDICTED: cap-specifi ( 803) 320 82.4 8e-15
NP_055865 (OMIM: 616189) cap-specific mRNA (nucleo ( 835) 320 82.5 8.3e-15
NP_803188 (OMIM: 300499,309549) putative tRNA (cyt ( 327) 144 42.2 0.0042
XP_005272652 (OMIM: 300499,309549) PREDICTED: puta ( 327) 144 42.2 0.0042
NP_036412 (OMIM: 300499,309549) putative tRNA (cyt ( 329) 144 42.2 0.0042
XP_011542197 (OMIM: 300499,309549) PREDICTED: puta ( 335) 144 42.2 0.0043
XP_016884871 (OMIM: 300499,309549) PREDICTED: puta ( 335) 144 42.2 0.0043
XP_011542195 (OMIM: 300499,309549) PREDICTED: puta ( 337) 144 42.2 0.0043
XP_011542196 (OMIM: 300499,309549) PREDICTED: puta ( 337) 144 42.2 0.0043
>>XP_011521530 (OMIM: 616190) PREDICTED: cap-specific mR (770 aa)
initn: 5287 init1: 5287 opt: 5287 Z-score: 6489.0 bits: 1211.4 E(85289): 0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)
10 20 30 40 50 60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_011 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
XP_011 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
670 680 690 700 710 720
730 740 750 760 770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
730 740 750 760 770
>>XP_016878933 (OMIM: 616190) PREDICTED: cap-specific mR (770 aa)
initn: 5287 init1: 5287 opt: 5287 Z-score: 6489.0 bits: 1211.4 E(85289): 0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)
10 20 30 40 50 60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_016 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
XP_016 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
670 680 690 700 710 720
730 740 750 760 770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
730 740 750 760 770
>>NP_001311303 (OMIM: 616190) cap-specific mRNA (nucleos (770 aa)
initn: 5287 init1: 5287 opt: 5287 Z-score: 6489.0 bits: 1211.4 E(85289): 0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)
10 20 30 40 50 60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
670 680 690 700 710 720
730 740 750 760 770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
730 740 750 760 770
>>XP_011521531 (OMIM: 616190) PREDICTED: cap-specific mR (770 aa)
initn: 5287 init1: 5287 opt: 5287 Z-score: 6489.0 bits: 1211.4 E(85289): 0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)
10 20 30 40 50 60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_011 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
XP_011 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
670 680 690 700 710 720
730 740 750 760 770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
730 740 750 760 770
>>NP_001093112 (OMIM: 616190) cap-specific mRNA (nucleos (770 aa)
initn: 5287 init1: 5287 opt: 5287 Z-score: 6489.0 bits: 1211.4 E(85289): 0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)
10 20 30 40 50 60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
670 680 690 700 710 720
730 740 750 760 770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
730 740 750 760 770
>>NP_001311308 (OMIM: 616190) cap-specific mRNA (nucleos (770 aa)
initn: 5287 init1: 5287 opt: 5287 Z-score: 6489.0 bits: 1211.4 E(85289): 0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)
10 20 30 40 50 60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
670 680 690 700 710 720
730 740 750 760 770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
730 740 750 760 770
>>NP_001311306 (OMIM: 616190) cap-specific mRNA (nucleos (770 aa)
initn: 5287 init1: 5287 opt: 5287 Z-score: 6489.0 bits: 1211.4 E(85289): 0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)
10 20 30 40 50 60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
670 680 690 700 710 720
730 740 750 760 770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
730 740 750 760 770
>>NP_001311307 (OMIM: 616190) cap-specific mRNA (nucleos (770 aa)
initn: 5287 init1: 5287 opt: 5287 Z-score: 6489.0 bits: 1211.4 E(85289): 0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)
10 20 30 40 50 60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_001 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_001 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
670 680 690 700 710 720
730 740 750 760 770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
730 740 750 760 770
>>NP_060818 (OMIM: 616190) cap-specific mRNA (nucleoside (770 aa)
initn: 5287 init1: 5287 opt: 5287 Z-score: 6489.0 bits: 1211.4 E(85289): 0
Smith-Waterman score: 5287; 99.7% identity (100.0% similar) in 770 aa overlap (1-770:1-770)
10 20 30 40 50 60
pF1KB5 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEF
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
NP_060 MSKCRKTPVQQLASPASFSPDILADIFELFAKNFSYGKPLNNEWQLPDPSEIFTCDHTEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NAFLDLKNSLNEVKNLLSDKKLDEWHEHTAFTNKAGKIISHVRKSVNAELCTQAWCKFHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVANTLNPYHEA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NDDLMMIMDDRLIANTLHWWYFGPDNTGDIMTLKFLTGLQNFISSMATVHLVTADGSFDC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSINLMYLLNCCFDQVHV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 FKPATSKAGNSEVYVVCLHYKGREAIHPLLSKMTLNFGTEMKRKALFPHHVIPDSFLKRH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRSNWLV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
NP_060 EECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQYFMQKFQLKHLSRNNWLV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KKSSIGCSTNTKWFGQRNKYFKTYNERKMLEALSWKDKVAKGYFNSWAEEHGVYHPGQSS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB5 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ILEGTASNLECHLWHILEGKKLPKVKCSPFCNGEILKTLNEAIEKSLGGAFNLDSKFRPK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB5 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QQYSCSCHVFSEELIFSELCSLTECLQDEQVVVPSNQIKCLLVGFSTLRNIKMHIPLEVR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB5 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LLESAELTTFSCSLLHDGDPTYQRLFLDCLLHSLRELHTGDVMILPVLSCFTRFMAGLIF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB5 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VLHSCFRFITFVCPTSSDPLRTCAVLLCVGYQDLPNPVFRYLQSVNELLSTLLNSDSPQQ
670 680 690 700 710 720
730 740 750 760 770
pF1KB5 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VLQFVPMEVLLKGALLDFLWDLNAAIAKRHLHFIIQREREEIINSLQLQN
730 740 750 760 770
>>XP_005249012 (OMIM: 616189) PREDICTED: cap-specific mR (803 aa)
initn: 312 init1: 284 opt: 320 Z-score: 387.1 bits: 82.4 E(85289): 8e-15
Smith-Waterman score: 320; 29.8% identity (60.5% similar) in 228 aa overlap (143-361:276-491)
120 130 140 150 160 170
pF1KB5 QAWCKFHEILCSFPLIPQEAFQNGKLNSLHLCEAPGAFIASLNHYLKSHRFPCHWSWVAN
.: .::.: ..:. .. .: :.
XP_005 VFDRMFTNPRDSYGKPLVKDREAELLYFADVCAGPGGF----SEYVLWRK-----KWHAK
250 260 270 280 290
180 190 200 210 220
pF1KB5 TLNPYHEANDDLMMIMDDRLIANT-LHWWYFGP---DNTGDIMTLKFLTGLQNFI---SS
.. .. .:. ..: :.. : :.: :. ::: . .....::. ..
XP_005 GFGMTLKGPNDFK--LEDFYSASSELFEPYYGEGGIDGDGDITRPENISAFRNFVLDNTD
300 310 320 330 340 350
230 240 250 260 270 280
pF1KB5 MATVHLVTADGSFDCQGNPGEQEALVSSLHYCEVVTALTTLGNGGSFVLKMFTMFEHCSI
::.. :::.:. .:. . :: : ..: :. . ::. . .:: :. : : .: :.
XP_005 RKGVHFLMADGGFSVEGQENLQEILSKQLLLCQFLMALSIVRTGGHFICKTFDLFTPFSV
360 370 380 390 400 410
290 300 310 320 330 340
pF1KB5 NLMYLLNCCFDQVHVFKPATSKAGNSEVYVVCLHYK-GREAIHPLLSKMTLNFGTEMKRK
.:.::: :::..: .::: ::. .::: :::: : : . .. : ...... ...
XP_005 GLVYLLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLN-QLRNT
420 430 440 450 460 470
350 360 370 380 390 400
pF1KB5 ALFPHHVIPDSFLK-RHEECCVFFHKYQLETISENIRLFECMGKAEQEKLNNLRDCAIQY
. :.: .: ::
XP_005 DSDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQIKALAKIHAFVQDTTLSEPRQAEIRK
480 490 500 510 520 530
770 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 22:16:18 2016 done: Thu Nov 3 22:16:20 2016
Total Scan time: 11.490 Total Display time: 0.240
Function used was FASTA [36.3.4 Apr, 2011]